R CMD check for iptools

00check.log

* using log directory ‘/Users/bryce/src/iptools/..Rcheck’
* using R version 3.2.0 (2015-04-16)
* using platform: x86_64-apple-darwin14.3.0 (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘./DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘iptools’ version ‘0.2.0’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Bob Rudis <[email protected]>’
New submission

License components with restrictions and base license permitting such:
  MIT + file LICENSE
File 'LICENSE':
  YEAR: 2015
  COPYRIGHT HOLDER: Bob Rudis & Oliver Keyes

Package has a VignetteBuilder field but no prebuilt vignette index.

The Title field should be in title case, current version then in title case:
‘Manipulate, Validate and Resolve IP addresses’
‘Manipulate, Validate and Resolve IP Addresses’
* checking package namespace information ... OK
* checking package dependencies ... NOTE
  No repository set, so cyclic dependency check skipped
* checking if this is a source package ... WARNING
Subdirectory ‘iptools/src’ contains apparent object files/libraries
  RcppExports.o asio_bindings.o iptools.o iptools.so
Object files/libraries should not be included in a source package.
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .gitignore
  ..Rcheck
  .git
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.

CRAN-pack does not know about
  ..Rcheck
  .git
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘iptools’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard files/directories found at top level:
  ‘CONDUCT.md’ ‘NEWS.md’ ‘iptools.Rproj’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Found the following directory with the name of a check directory:
  ./..Rcheck
Most likely, these were included erroneously.
Found the following directory with the name of a version control directory:
  ./.git
These should not be in a package tarball.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... WARNING
  Note: found 9 marked UTF-8 strings
  Warning: found non-ASCII strings
  'Framework for transferring any file from any app, to
        any app on any device: simply with a sw<c3><bf>p.' in object 'iana_ports'
  '[Ari<e2><88><9a><c2><b4>n Huisken <xadmin&huisken-systems.nl> 15 June 2009]' in object 'iana_ports'
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                 old_size new_size compress
  iana_ports.rda    285Kb    180Kb       xz
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... NOTE
Found the following Makefile(s) without a final LF:
  src/Makevars
Some ‘make’ programs ignore lines not ending in LF.
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... WARNING
File ‘iptools/libs/iptools.so’:
  Found ‘___assert_rtn’, possibly from ‘assert’ (C)
    Object: ‘asio_bindings.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor the system RNG.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... OK
  Running ‘test-all.R’
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... WARNING
Package vignettes without corresponding PDF/HTML:
   ‘introduction_to_iptools.Rmd’
   ‘iptools_datasets.Rmd’

* checking running R code from vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 6 WARNINGs, 5 NOTEs

shelloutput.txt

bryce at air in ~/src/iptools [master|…41]
$ R CMD check --as-cran .
* using log directory ‘/Users/bryce/src/iptools/..Rcheck’
* using R version 3.2.0 (2015-04-16)
* using platform: x86_64-apple-darwin14.3.0 (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘./DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘iptools’ version ‘0.2.0’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Bob Rudis <[email protected]>’
New submission

License components with restrictions and base license permitting such:
  MIT + file LICENSE
File 'LICENSE':
  YEAR: 2015
  COPYRIGHT HOLDER: Bob Rudis & Oliver Keyes

Package has a VignetteBuilder field but no prebuilt vignette index.

The Title field should be in title case, current version then in title case:
‘Manipulate, Validate and Resolve IP addresses’
‘Manipulate, Validate and Resolve IP Addresses’
* checking package namespace information ... OK
* checking package dependencies ... NOTE
  No repository set, so cyclic dependency check skipped
* checking if this is a source package ... WARNING
Subdirectory ‘iptools/src’ contains apparent object files/libraries
  RcppExports.o asio_bindings.o iptools.o iptools.so
Object files/libraries should not be included in a source package.
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .gitignore
  ..Rcheck
  .git
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.

CRAN-pack does not know about
  ..Rcheck
  .git
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘iptools’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard files/directories found at top level:
  ‘CONDUCT.md’ ‘NEWS.md’ ‘iptools.Rproj’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Found the following directory with the name of a check directory:
  ./..Rcheck
Most likely, these were included erroneously.
Found the following directory with the name of a version control directory:
  ./.git
These should not be in a package tarball.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... WARNING
  Note: found 9 marked UTF-8 strings
  Warning: found non-ASCII strings
  'Framework for transferring any file from any app, to
        any app on any device: simply with a sw<c3><bf>p.' in object 'iana_ports'
  '[Ari<e2><88><9a><c2><b4>n Huisken <xadmin&huisken-systems.nl> 15 June 2009]' in object 'iana_ports'
* checking data for ASCII and uncompressed saves ... WARNING

  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                 old_size new_size compress
  iana_ports.rda    285Kb    180Kb       xz
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... NOTE
Found the following Makefile(s) without a final LF:
  src/Makevars
Some ‘make’ programs ignore lines not ending in LF.
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... WARNING
File ‘iptools/libs/iptools.so’:
  Found ‘___assert_rtn’, possibly from ‘assert’ (C)
    Object: ‘asio_bindings.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor the system RNG.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-all.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... WARNING
Package vignettes without corresponding PDF/HTML:
   ‘introduction_to_iptools.Rmd’
   ‘iptools_datasets.Rmd’

* checking running R code from vignettes ...
   ‘introduction_to_iptools.Rmd’ using ‘UTF-8’ ... OK
   ‘iptools_datasets.Rmd’ using ‘UTF-8’ ... OK
 OK
* checking re-building of vignette outputs ...Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
Warning in file.copy(pkgdir, vd2, recursive = TRUE) : too deep nesting
 OK
* checking PDF version of manual ... OK
* DONE

Status: 6 WARNINGs, 5 NOTEs
See
  ‘/Users/bryce/src/iptools/..Rcheck/00check.log’
for details.