Bootstrap script for installing Apache Zeppelin on an Amazon EMR Cluster. Verfied on Amazon EMR release 4.x.

install-apache-zeppelin-on-amazon-emr.sh

#!/bin/bash -ex

if [ "$(cat /mnt/var/lib/info/instance.json | jq -r .isMaster)" == "true" ]; then
    # Install Git
    sudo yum -y install git

    # Install Maven
    wget -P /tmp http://apache.mirrors.spacedump.net/maven/maven-3/3.3.3/binaries/apache-maven-3.3.3-bin.tar.gz
    sudo mkdir /opt/apache-maven
    sudo tar -xvzf /tmp/apache-maven-3.3.3-bin.tar.gz -C /opt/apache-maven
    
    cat <<EOF >> /home/hadoop/.bashrc

# Maven
export MAVEN_HOME=/opt/apache-maven/apache-maven-3.3.3
export PATH=\$MAVEN_HOME/bin:\$PATH
EOF
    source /home/hadoop/.bashrc

    # Install Zeppelin
    git clone https://github.com/apache/incubator-zeppelin.git /home/hadoop/zeppelin
    cd /home/hadoop/zeppelin
    mvn clean package -Pspark-1.4 -Dhadoop.version=2.6.0 -Phadoop-2.6 -Pyarn -DskipTests

    # Configure Zeppelin
    SPARK_DEFAULTS=/usr/lib/spark/conf/spark-defaults.conf
    declare -a ZEPPELIN_JAVA_OPTS
    if [ -f $SPARK_DEFAULTS ]; then
        ZEPPELIN_JAVA_OPTS=("${ZEPPELIN_JAVA_OPTS[@]}" \
            $(grep spark.executor.instances $SPARK_DEFAULTS | awk '{print "-D" $1 "=" $2}'))
        ZEPPELIN_JAVA_OPTS=("${ZEPPELIN_JAVA_OPTS[@]}" \
            $(grep spark.executor.cores $SPARK_DEFAULTS | awk '{print "-D" $1 "=" $2}'))
        ZEPPELIN_JAVA_OPTS=("${ZEPPELIN_JAVA_OPTS[@]}" \
            $(grep spark.executor.memory $SPARK_DEFAULTS | awk '{print "-D" $1 "=" $2}'))
        ZEPPELIN_JAVA_OPTS=("${ZEPPELIN_JAVA_OPTS[@]}" \
            $(grep spark.default.parallelism $SPARK_DEFAULTS | awk '{print "-D" $1 "=" $2}'))
        ZEPPELIN_JAVA_OPTS=("${ZEPPELIN_JAVA_OPTS[@]}" \
            $(grep spark.yarn.executor.memoryOverhead $SPARK_DEFAULTS | awk '{print "-D" $1 "=" $2}'))
    fi
    echo "${ZEPPELIN_JAVA_OPTS[@]}"

    cp conf/zeppelin-env.sh.template conf/zeppelin-env.sh
    cat <<EOF >> conf/zeppelin-env.sh

export MASTER=yarn-client
export HADOOP_HOME=/usr/lib/hadoop
export HADOOP_CONF_DIR=/etc/hadoop/conf
export ZEPPELIN_SPARK_USEHIVECONTEXT=false
export ZEPPELIN_JAVA_OPTS="${ZEPPELIN_JAVA_OPTS[@]}"
export PYTHONPATH=$PYTHONPATH:/usr/lib/spark/python
EOF

    cat <<'EOF' > 0001-Add-Hadoop-libraries-and-EMRFS-to-Zeppelin-classpath.patch
From 2b0226e45207758d526522bd22d497c9def7c008 Mon Sep 17 00:00:00 2001
From: Anders Hammar <[email protected]>
Date: Fri, 18 Sep 2015 10:24:18 +0000
Subject: [PATCH] Add Hadoop libraries and EMRFS to Zeppelin classpath

---
 bin/interpreter.sh | 13 +++++++++++++
 1 file changed, 13 insertions(+)

diff --git a/bin/interpreter.sh b/bin/interpreter.sh
index e03a13b..de458f2 100755
--- a/bin/interpreter.sh
+++ b/bin/interpreter.sh
@@ -89,8 +89,21 @@ if [[ "${INTERPRETER_ID}" == "spark" ]]; then
       # CDH
       addJarInDir "${HADOOP_HOME}"
       addJarInDir "${HADOOP_HOME}/lib"
+
+      # Hadoop libraries
+      addJarInDir "${HADOOP_HOME}/../hadoop-hdfs"
+      addJarInDir "${HADOOP_HOME}/../hadoop-mapreduce"
+      addJarInDir "${HADOOP_HOME}/../hadoop-yarn"
+
+      # Hadoop LZO
+      addJarInDir "${HADOOP_HOME}/../hadoop-lzo/lib"
     fi

+    # Add EMRFS libraries
+    addJarInDir "/usr/share/aws/emr/emrfs/conf"
+    addJarInDir "/usr/share/aws/emr/emrfs/lib"
+    addJarInDir "/usr/share/aws/emr/emrfs/auxlib"
+
     addJarInDir "${INTERPRETER_DIR}/dep"
     PYSPARKPATH="${ZEPPELIN_HOME}/interpreter/spark/pyspark/pyspark.zip:${ZEPPELIN_HOME}/interpreter/spark/pyspark/py4j-0.8.2.1-src.zip"

--
2.1.0

EOF
    git config user.email "[email protected]"
    git config user.name "Your Name"
    git am 0001-Add-Hadoop-libraries-and-EMRFS-to-Zeppelin-classpath.patch

    # Start the Zeppelin daemon
    bin/zeppelin-daemon.sh start
fi

Anders,

Thanks for sharing the bootstrap script. I just spun up a new EMR 4 cluster with your script for Zeppelin and it seem to work. However, when I connect to http://localhost:8080/, it says "disconnected" and clicking on the Create New Note link does nothing. Can you shed some light on this? I am new to Zeppelin so not sure how to troubleshoot. I reviewed the https://zeppelin.incubator.apache.org/ site but did not find anything helpful. Am I missing configuration steps?

Thanks

Francis

I figured it out, I tunnel to 4040 and 8080 but missed the one for 8081. After adding 8081 port, it worked.

Thanks, Anders. It's very helpful for me to setup the apache zeppelin on AWS EMR cluster. And I just add installing nodejs, npm into your script.

sudo yum -y install nodejs npm --enablerepo=epel

Hi Anders!

I launched EMR cluster with same version of software as I can see here,
Applied your file (manually),

When I enter Zeppelin and try to actually do something in Scala in a notebook I get this. Ever bumped into this?

val people = sc.textFile("s3://mybucket/storage-archive/run=2015-08-15*")
people.take(10)
people: org.apache.spark.rdd.RDD[String] = s3://mybucket/storage-archive/run=2015-08-15* MapPartitionsRDD[3] at textFile at <console>:23
java.lang.RuntimeException: Error in configuring object
    at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:109)
    at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:75)
    at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133)
    at org.apache.spark.rdd.HadoopRDD.getInputFormat(HadoopRDD.scala:186)
    at org.apache.spark.rdd.HadoopRDD.getPartitions(HadoopRDD.scala:199)
...
Caused by: java.lang.ClassNotFoundException: Class com.hadoop.compression.lzo.LzoCodec not found
    at org.apache.hadoop.conf.Configuration.getClassByName(Configuration.java:1801)
    at org.apache.hadoop.io.compress.CompressionCodecFactory.getCodecClasses(CompressionCodecFactory.java:128)
    ... 59 more

I think that you can add the below one in the common.sh

+ addJarInDir "${SPARK_HOME}/classpath/emr"
+ addJarInDir "${SPARK_HOME}/classpath/emrfs"
+ addJarInDir "${HADOOP_HOME}/share/hadoop/common/lib"
+ addJarInDir "${HADOOP_HOME}/share/hadoop/common/lib/hadoop-lzo.jar"

Thanks for you all comments. I recently updated the script so that it works with Amazon EMR release 4.x clusters.

Note that the script is still using Zeppelin's bundled Spark installation since I haven't been able to get Zeppelin to work together with Amazon's Spark installation (via SPARK_HOME/HADOOP_HOME) yet.

Doesn't look like good idea to patch master in this way: Zeppelin updates this file and patch doesn't work...

anyway, i stuck with "org.apache.spark.SparkException: Found both spark.driver.extraClassPath and
SPARK_CLASSPATH. Use only the former."

@mwacc,
I've got same problem and fixed it with changing ./bin/interpreter.sh
CLASSPATH+=":${ZEPPELIN_CLASSPATH}"

SparkException: Found both spark.driver.extraClassPath and SPARK_CLASSPATH. Use only the former

export SPARK_CLASSPATH+=":${CLASSPATH}"
if [[ -n "${SPARK_SUBMIT}" ]]; then
${SPARK_SUBMIT} --class ${ZEPPELIN_SERVER} --driver-java-options "${JAVA_INTP_OPTS}" ${SPARK_SUBMIT_OPTIONS} ${SPARK_APP_JAR} ${PORT} &
else
${ZEPPELIN_RUNNER} ${JAVA_INTP_OPTS} -cp ${CLASSPATH} ${ZEPPELIN_SERVER} ${PORT} &
fi

Hello guys

I followed the instructions here got the zeppelin working on AWS EMR cluster with spark for release label 4.4.0.

But now I faced an issue when I try to add R interpreter in zeppelin. The maven command I used is

mvn clean package -Pyarn -Pr -DskipTests

I am trying to use the spark provided by EMR cluster so in zeppelin-env.sh I had this configuration:
export MASTER=yarn-client
export HADOOP_HOME=/usr/lib/hadoop
export SPARK_HOME=/usr/lib/spark
export HADOOP_CONF_DIR=/etc/hadoop/conf
export ZEPPELIN_SPARK_USEHIVECONTEXT=false
export ZEPPELIN_JAVA_OPTS="${ZEPPELIN_JAVA_OPTS[@]}"
export PYTHONPATH=$PYTHONPATH:/usr/lib/spark/python

Added spark_home variable

But now it doesn't work even for the spark interpreter.

There is another small issue I want to ask here, when I change something in zeppelin-env.sh and save the file then restart zeppelin-deamon, I should expect the change got applied immediately right? Or do I need to do something else to make sure the change applied? Right now I don't see the change made in zeppelin-env.sh get applied after I restarted zeppelin.

Thanks in advance

Hello guys, can this be run on an existing EMR cluster?

Hi I am using Zeppelin on the new EMR as it's now a built in option. I notice there's no %dep interpreter. How are we to add external packages?

anyone got it working on EMR 5.8.0 ?

since there were no answers, I've created a simple bootstrap script to install Zeppelin 0.8 on EMR (tested with EMR 5.16.0)