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Semi auto-generated YAML file for CMIP6 data on Glade: Generate YAML file for CMIP6 data on GLade
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cmip5-generate_yaml.ipynb
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cmip5-input.yaml
collection_name: GLADE-CMIP5
collection_type: cmip5
products:
output:
CCCma:
- CanCM4
- CanESM2
output1:
BCC:
- bcc-csm1-1
- bcc-csm1-1-m
BNU:
- BNU-ESM
CCCma:
- CanCM4
- CanESM2
CMCC:
- CMCC-CESM
- CMCC-CM
- CMCC-CMS
CNRM-CERFACS:
- CNRM-CM5
- CNRM-CM5-2
CSIRO-BOM:
- ACCESS1-0
- ACCESS1-3
- ACCESS1
CSIRO-QCCCE:
- CSIRO-Mk3-6-0
FIO:
- FIO-ESM
- fio-esm
ICHEC:
- EC-EARTH
INM:
- inmcm4
INPE:
- HadGEM2-ES
IPSL:
- IPSL-CM5A-LR
- IPSL-CM5A-MR
- IPSL-CM5B-LR
LASG-CESS:
- FGOALS-g2
LASG-IAP:
- FGOALS-s2
MIROC:
- MIROC-ESM
- MIROC-ESM-CHEM
- MIROC4h
- MIROC5
MOHC:
- HadCM3
- HadGEM2-A
- HadGEM2-CC
- HadGEM2-ES
MPI-M:
- MPI-ESM-LR
- MPI-ESM-MR
- MPI-ESM-P
MRI:
- MRI-AGCM3-2H
- MRI-AGCM3-2S
- MRI-CGCM3
- MRI-ESM1
NASA-GISS:
- GISS-E2-H
- GISS-E2-H-CC
- GISS-E2-R
- GISS-E2-R-CC
NCAR:
- CCSM4
NCC:
- NorESM1-M
- NorESM1-ME
NIMR-KMA:
- HadGEM2-AO
NOAA-GFDL:
- GFDL-CM2p1
- GFDL-CM3
- GFDL-ESM2G
- GFDL-ESM2M
NSF-DOE-NCAR:
- CESM1-BGC
- CESM1-CAM5
- CESM1-FASTCHEM
- CESM1-WACCM
UNSW:
- CSIRO-Mk3L-1-2
output2:
CMCC:
- CMCC-CESM
- CMCC-CMS
ICHEC:
- EC-EARTH
INM:
- inmcm4
INPE:
- HadGEM2-ES
IPSL:
- IPSL-CM5A-LR
- IPSL-CM5A-MR
- IPSL-CM5B-LR
MIROC:
- MIROC-ESM
- MIROC4h
- MIROC5
MOHC:
- HadCM3
- HadGEM2-ES
MPI-M:
- MPI-ESM-LR
MRI:
- MRI-CGCM3
- MRI-ESM1
NASA-GISS:
- GISS-E2-H
- GISS-E2-R
NCAR:
- CCSM4
NCC:
- NorESM1-M
- NorESM1-ME
NSF-DOE-NCAR:
- CESM1-BGC
- CESM1-CAM5
- CESM1-FASTCHEM
- CESM1-WACCM
root_dir: /glade/collections/cmip/cmip5
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cmip5-template.yaml
name: {{ collection_name }}
collection_type: {{ collection_type }}
data_sources:
{% for product_id, product_vals in products.items() %}
{% for institute, institute_vals in product_vals.items() %}
{% for model in institute_vals %}
{{ institute }}-{{ model }}-{{ product_id }}:
locations:
- name: GLADE-{{ institute }}-{{ model }}-{{ product_id }}
loc_type: posix
direct_access: True
urlpath: {{ root_dir }}/{{ product_id }}/{{ institute }}/{{ model }}
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: {{ product_id }}
activity: CMIP5
institute: {{ institute }}
{% endfor %}
{% endfor %}
{% endfor %}
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cmip6-generate_yaml.ipynb
{
"cells": [
{
"cell_type": "code",
"execution_count": 1,
"metadata": {},
"outputs": [
{
"name": "stderr",
"output_type": "stream",
"text": [
"/glade/work/abanihi/softwares/miniconda3/envs/analysis/lib/python3.7/site-packages/tqdm/autonotebook/__init__.py:18: TqdmExperimentalWarning: Using `tqdm.autonotebook.tqdm` in notebook mode. Use `tqdm.tqdm` instead to force console mode (e.g. in jupyter console)\n",
" \" (e.g. in jupyter console)\", TqdmExperimentalWarning)\n"
]
}
],
"source": [
"from pathlib import Path\n",
"import yaml\n",
"from intake.utils import yaml_load\n",
"from jinja2 import Environment, FileSystemLoader\n",
"import os"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Generate Input Data"
]
},
{
"cell_type": "code",
"execution_count": 2,
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"{'collection_type': 'cmip6',\n",
" 'collection_name': 'GLADE-CMIP6',\n",
" 'root_dir': '/glade/collections/cmip/CMIP6'}"
]
},
"execution_count": 2,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"config_data = {'collection_type': 'cmip6',\n",
" 'collection_name': 'GLADE-CMIP6',\n",
" 'root_dir': '/glade/collections/cmip/CMIP6'}\n",
"config_data"
]
},
{
"cell_type": "code",
"execution_count": 3,
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"[PosixPath('/glade/collections/cmip/CMIP6/AerChemMIP'),\n",
" PosixPath('/glade/collections/cmip/CMIP6/CFMIP'),\n",
" PosixPath('/glade/collections/cmip/CMIP6/CMIP'),\n",
" PosixPath('/glade/collections/cmip/CMIP6/LS3MIP'),\n",
" PosixPath('/glade/collections/cmip/CMIP6/LUMIP'),\n",
" PosixPath('/glade/collections/cmip/CMIP6/PAMIP'),\n",
" PosixPath('/glade/collections/cmip/CMIP6/ScenarioMIP')]"
]
},
"execution_count": 3,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"activity_ids = sorted(list(Path(config_data['root_dir']).glob(\"*\")))\n",
"activity_ids"
]
},
{
"cell_type": "code",
"execution_count": 4,
"metadata": {},
"outputs": [],
"source": [
"d = {}\n",
"for activity in activity_ids:\n",
" institution_ids = sorted(list(activity.glob(\"*\")))\n",
" models = {}\n",
" for institution in institution_ids:\n",
" models[institution.stem] = [path.stem for path in sorted(institution.glob(\"*\"))]\n",
" d[institution.parent.stem] = models\n",
"config_data['activities'] = d"
]
},
{
"cell_type": "code",
"execution_count": 5,
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"dict_keys(['collection_type', 'collection_name', 'root_dir', 'activities'])"
]
},
"execution_count": 5,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"config_data.keys()"
]
},
{
"cell_type": "code",
"execution_count": 6,
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"{'collection_type': 'cmip6',\n",
" 'collection_name': 'GLADE-CMIP6',\n",
" 'root_dir': '/glade/collections/cmip/CMIP6',\n",
" 'activities': {'AerChemMIP': {'NCAR': ['CESM2-WACCM']},\n",
" 'CFMIP': {'NCAR': ['CESM2']},\n",
" 'CMIP': {'AWI': ['AWI-CM-1-1-MR'],\n",
" 'BCC': ['BCC-CSM2-MR', 'BCC-ESM1'],\n",
" 'CAMS': ['CAMS-CSM1-0'],\n",
" 'CAS': ['FGOALS-f3-L'],\n",
" 'CCCma': ['CanESM5'],\n",
" 'CNRM-CERFACS': ['CNRM-CM6-1', 'CNRM-ESM2-1'],\n",
" 'E3SM-Project': ['E3SM-1-0'],\n",
" 'EC-Earth-Consortium': ['EC-Earth3', 'EC-Earth3-LR', 'EC-Earth3-Veg'],\n",
" 'IPSL': ['IPSL-CM6A-LR'],\n",
" 'MIROC': ['MIROC6'],\n",
" 'MOHC': ['HadGEM3-GC31-LL', 'UKESM1-0-LL'],\n",
" 'MRI': ['MRI-ESM2-0'],\n",
" 'NASA-GISS': ['GISS-E2-1-G', 'GISS-E2-1-H'],\n",
" 'NCAR': ['CESM2', 'CESM2-WACCM'],\n",
" 'NOAA-GFDL': ['GFDL-AM4', 'GFDL-CM4'],\n",
" 'SNU': ['SAM0-UNICON']},\n",
" 'LS3MIP': {'NCAR': ['CESM2']},\n",
" 'LUMIP': {'NCAR': ['CESM2']},\n",
" 'PAMIP': {'NCAR': ['CESM2']},\n",
" 'ScenarioMIP': {'BCC': ['BCC-CSM2-MR'],\n",
" 'CCCma': ['CanESM5'],\n",
" 'CNRM-CERFACS': ['CNRM-CM6-1', 'CNRM-ESM2-1'],\n",
" 'IPSL': ['IPSL-CM6A-LR'],\n",
" 'MOHC': ['UKESM1-0-LL'],\n",
" 'MRI': ['MRI-ESM2-0']}}}"
]
},
"execution_count": 6,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"config_data"
]
},
{
"cell_type": "code",
"execution_count": 7,
"metadata": {},
"outputs": [],
"source": [
"with open('cmip6-input.yaml', 'w') as outfile:\n",
" yaml.dump(config_data, outfile, default_flow_style=False)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Render the template using the input data"
]
},
{
"cell_type": "code",
"execution_count": 8,
"metadata": {},
"outputs": [],
"source": [
"def generator(config_data_file_path, template_file_path):\n",
" # Load data from YAML into Python dictionary\n",
" config_data = yaml_load(open(config_data_file_path))\n",
"\n",
" # Load Jinja2 template\n",
" template_dir = os.path.dirname(os.path.abspath(template_file_path))\n",
"\n",
" env = Environment(loader=FileSystemLoader(template_dir), trim_blocks=True, lstrip_blocks=True)\n",
"\n",
" template = env.get_template(os.path.basename(template_file_path))\n",
"\n",
"\n",
" # Render the template with data and print the output\n",
" data = template.render(config_data)\n",
" \n",
" \n",
" return data"
]
},
{
"cell_type": "code",
"execution_count": 9,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"name: GLADE-CMIP6\n",
"collection_type: cmip6\n",
"data_sources:\n",
" NCAR-CESM2-WACCM-AerChemMIP:\n",
" locations:\n",
" - name: GLADE-NCAR-CESM2-WACCM-AerChemMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/AerChemMIP/NCAR/CESM2-WACCM\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: AerChemMIP\n",
" institution_id: NCAR\n",
"\n",
" NCAR-CESM2-CFMIP:\n",
" locations:\n",
" - name: GLADE-NCAR-CESM2-CFMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CFMIP/NCAR/CESM2\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CFMIP\n",
" institution_id: NCAR\n",
"\n",
" AWI-AWI-CM-1-1-MR-CMIP:\n",
" locations:\n",
" - name: GLADE-AWI-AWI-CM-1-1-MR-CMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CMIP/AWI/AWI-CM-1-1-MR\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CMIP\n",
" institution_id: AWI\n",
"\n",
" BCC-BCC-CSM2-MR-CMIP:\n",
" locations:\n",
" - name: GLADE-BCC-BCC-CSM2-MR-CMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CMIP/BCC/BCC-CSM2-MR\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CMIP\n",
" institution_id: BCC\n",
"\n",
" BCC-BCC-ESM1-CMIP:\n",
" locations:\n",
" - name: GLADE-BCC-BCC-ESM1-CMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CMIP/BCC/BCC-ESM1\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CMIP\n",
" institution_id: BCC\n",
"\n",
" CAMS-CAMS-CSM1-0-CMIP:\n",
" locations:\n",
" - name: GLADE-CAMS-CAMS-CSM1-0-CMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CMIP/CAMS/CAMS-CSM1-0\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CMIP\n",
" institution_id: CAMS\n",
"\n",
" CAS-FGOALS-f3-L-CMIP:\n",
" locations:\n",
" - name: GLADE-CAS-FGOALS-f3-L-CMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CMIP/CAS/FGOALS-f3-L\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CMIP\n",
" institution_id: CAS\n",
"\n",
" CCCma-CanESM5-CMIP:\n",
" locations:\n",
" - name: GLADE-CCCma-CanESM5-CMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CMIP/CCCma/CanESM5\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CMIP\n",
" institution_id: CCCma\n",
"\n",
" CNRM-CERFACS-CNRM-CM6-1-CMIP:\n",
" locations:\n",
" - name: GLADE-CNRM-CERFACS-CNRM-CM6-1-CMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CMIP/CNRM-CERFACS/CNRM-CM6-1\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CMIP\n",
" institution_id: CNRM-CERFACS\n",
"\n",
" CNRM-CERFACS-CNRM-ESM2-1-CMIP:\n",
" locations:\n",
" - name: GLADE-CNRM-CERFACS-CNRM-ESM2-1-CMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CMIP/CNRM-CERFACS/CNRM-ESM2-1\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CMIP\n",
" institution_id: CNRM-CERFACS\n",
"\n",
" E3SM-Project-E3SM-1-0-CMIP:\n",
" locations:\n",
" - name: GLADE-E3SM-Project-E3SM-1-0-CMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CMIP/E3SM-Project/E3SM-1-0\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CMIP\n",
" institution_id: E3SM-Project\n",
"\n",
" EC-Earth-Consortium-EC-Earth3-CMIP:\n",
" locations:\n",
" - name: GLADE-EC-Earth-Consortium-EC-Earth3-CMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CMIP/EC-Earth-Consortium/EC-Earth3\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CMIP\n",
" institution_id: EC-Earth-Consortium\n",
"\n",
" EC-Earth-Consortium-EC-Earth3-LR-CMIP:\n",
" locations:\n",
" - name: GLADE-EC-Earth-Consortium-EC-Earth3-LR-CMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CMIP/EC-Earth-Consortium/EC-Earth3-LR\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CMIP\n",
" institution_id: EC-Earth-Consortium\n",
"\n",
" EC-Earth-Consortium-EC-Earth3-Veg-CMIP:\n",
" locations:\n",
" - name: GLADE-EC-Earth-Consortium-EC-Earth3-Veg-CMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CMIP/EC-Earth-Consortium/EC-Earth3-Veg\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CMIP\n",
" institution_id: EC-Earth-Consortium\n",
"\n",
" IPSL-IPSL-CM6A-LR-CMIP:\n",
" locations:\n",
" - name: GLADE-IPSL-IPSL-CM6A-LR-CMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CMIP/IPSL/IPSL-CM6A-LR\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CMIP\n",
" institution_id: IPSL\n",
"\n",
" MIROC-MIROC6-CMIP:\n",
" locations:\n",
" - name: GLADE-MIROC-MIROC6-CMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CMIP/MIROC/MIROC6\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CMIP\n",
" institution_id: MIROC\n",
"\n",
" MOHC-HadGEM3-GC31-LL-CMIP:\n",
" locations:\n",
" - name: GLADE-MOHC-HadGEM3-GC31-LL-CMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CMIP/MOHC/HadGEM3-GC31-LL\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CMIP\n",
" institution_id: MOHC\n",
"\n",
" MOHC-UKESM1-0-LL-CMIP:\n",
" locations:\n",
" - name: GLADE-MOHC-UKESM1-0-LL-CMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CMIP/MOHC/UKESM1-0-LL\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CMIP\n",
" institution_id: MOHC\n",
"\n",
" MRI-MRI-ESM2-0-CMIP:\n",
" locations:\n",
" - name: GLADE-MRI-MRI-ESM2-0-CMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CMIP/MRI/MRI-ESM2-0\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CMIP\n",
" institution_id: MRI\n",
"\n",
" NASA-GISS-GISS-E2-1-G-CMIP:\n",
" locations:\n",
" - name: GLADE-NASA-GISS-GISS-E2-1-G-CMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CMIP/NASA-GISS/GISS-E2-1-G\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CMIP\n",
" institution_id: NASA-GISS\n",
"\n",
" NASA-GISS-GISS-E2-1-H-CMIP:\n",
" locations:\n",
" - name: GLADE-NASA-GISS-GISS-E2-1-H-CMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CMIP/NASA-GISS/GISS-E2-1-H\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CMIP\n",
" institution_id: NASA-GISS\n",
"\n",
" NCAR-CESM2-CMIP:\n",
" locations:\n",
" - name: GLADE-NCAR-CESM2-CMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CMIP/NCAR/CESM2\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CMIP\n",
" institution_id: NCAR\n",
"\n",
" NCAR-CESM2-WACCM-CMIP:\n",
" locations:\n",
" - name: GLADE-NCAR-CESM2-WACCM-CMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CMIP/NCAR/CESM2-WACCM\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CMIP\n",
" institution_id: NCAR\n",
"\n",
" NOAA-GFDL-GFDL-AM4-CMIP:\n",
" locations:\n",
" - name: GLADE-NOAA-GFDL-GFDL-AM4-CMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CMIP/NOAA-GFDL/GFDL-AM4\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CMIP\n",
" institution_id: NOAA-GFDL\n",
"\n",
" NOAA-GFDL-GFDL-CM4-CMIP:\n",
" locations:\n",
" - name: GLADE-NOAA-GFDL-GFDL-CM4-CMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CMIP/NOAA-GFDL/GFDL-CM4\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CMIP\n",
" institution_id: NOAA-GFDL\n",
"\n",
" SNU-SAM0-UNICON-CMIP:\n",
" locations:\n",
" - name: GLADE-SNU-SAM0-UNICON-CMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/CMIP/SNU/SAM0-UNICON\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: CMIP\n",
" institution_id: SNU\n",
"\n",
" NCAR-CESM2-LS3MIP:\n",
" locations:\n",
" - name: GLADE-NCAR-CESM2-LS3MIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/LS3MIP/NCAR/CESM2\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: LS3MIP\n",
" institution_id: NCAR\n",
"\n",
" NCAR-CESM2-LUMIP:\n",
" locations:\n",
" - name: GLADE-NCAR-CESM2-LUMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/LUMIP/NCAR/CESM2\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: LUMIP\n",
" institution_id: NCAR\n",
"\n",
" NCAR-CESM2-PAMIP:\n",
" locations:\n",
" - name: GLADE-NCAR-CESM2-PAMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/PAMIP/NCAR/CESM2\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: PAMIP\n",
" institution_id: NCAR\n",
"\n",
" BCC-BCC-CSM2-MR-ScenarioMIP:\n",
" locations:\n",
" - name: GLADE-BCC-BCC-CSM2-MR-ScenarioMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/ScenarioMIP/BCC/BCC-CSM2-MR\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: ScenarioMIP\n",
" institution_id: BCC\n",
"\n",
" CCCma-CanESM5-ScenarioMIP:\n",
" locations:\n",
" - name: GLADE-CCCma-CanESM5-ScenarioMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/ScenarioMIP/CCCma/CanESM5\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: ScenarioMIP\n",
" institution_id: CCCma\n",
"\n",
" CNRM-CERFACS-CNRM-CM6-1-ScenarioMIP:\n",
" locations:\n",
" - name: GLADE-CNRM-CERFACS-CNRM-CM6-1-ScenarioMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/ScenarioMIP/CNRM-CERFACS/CNRM-CM6-1\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: ScenarioMIP\n",
" institution_id: CNRM-CERFACS\n",
"\n",
" CNRM-CERFACS-CNRM-ESM2-1-ScenarioMIP:\n",
" locations:\n",
" - name: GLADE-CNRM-CERFACS-CNRM-ESM2-1-ScenarioMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/ScenarioMIP/CNRM-CERFACS/CNRM-ESM2-1\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: ScenarioMIP\n",
" institution_id: CNRM-CERFACS\n",
"\n",
" IPSL-IPSL-CM6A-LR-ScenarioMIP:\n",
" locations:\n",
" - name: GLADE-IPSL-IPSL-CM6A-LR-ScenarioMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/ScenarioMIP/IPSL/IPSL-CM6A-LR\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: ScenarioMIP\n",
" institution_id: IPSL\n",
"\n",
" MOHC-UKESM1-0-LL-ScenarioMIP:\n",
" locations:\n",
" - name: GLADE-MOHC-UKESM1-0-LL-ScenarioMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/ScenarioMIP/MOHC/UKESM1-0-LL\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: ScenarioMIP\n",
" institution_id: MOHC\n",
"\n",
" MRI-MRI-ESM2-0-ScenarioMIP:\n",
" locations:\n",
" - name: GLADE-MRI-MRI-ESM2-0-ScenarioMIP\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/CMIP6/ScenarioMIP/MRI/MRI-ESM2-0\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" mip_era: CMIP6\n",
" activity_id: ScenarioMIP\n",
" institution_id: MRI\n",
"\n",
"\n"
]
}
],
"source": [
"data = generator(\"cmip6-input.yaml\", \"cmip6-template.yaml\")\n",
"print(data)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"**Save the rendered template to a yaml file**"
]
},
{
"cell_type": "code",
"execution_count": 10,
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"{'name': 'GLADE-CMIP6',\n",
" 'collection_type': 'cmip6',\n",
" 'data_sources': {'NCAR-CESM2-WACCM-AerChemMIP': {'locations': [{'name': 'GLADE-NCAR-CESM2-WACCM-AerChemMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/AerChemMIP/NCAR/CESM2-WACCM',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'AerChemMIP',\n",
" 'institution_id': 'NCAR'}},\n",
" 'NCAR-CESM2-CFMIP': {'locations': [{'name': 'GLADE-NCAR-CESM2-CFMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CFMIP/NCAR/CESM2',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CFMIP',\n",
" 'institution_id': 'NCAR'}},\n",
" 'AWI-AWI-CM-1-1-MR-CMIP': {'locations': [{'name': 'GLADE-AWI-AWI-CM-1-1-MR-CMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CMIP/AWI/AWI-CM-1-1-MR',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CMIP',\n",
" 'institution_id': 'AWI'}},\n",
" 'BCC-BCC-CSM2-MR-CMIP': {'locations': [{'name': 'GLADE-BCC-BCC-CSM2-MR-CMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CMIP/BCC/BCC-CSM2-MR',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CMIP',\n",
" 'institution_id': 'BCC'}},\n",
" 'BCC-BCC-ESM1-CMIP': {'locations': [{'name': 'GLADE-BCC-BCC-ESM1-CMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CMIP/BCC/BCC-ESM1',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CMIP',\n",
" 'institution_id': 'BCC'}},\n",
" 'CAMS-CAMS-CSM1-0-CMIP': {'locations': [{'name': 'GLADE-CAMS-CAMS-CSM1-0-CMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CMIP/CAMS/CAMS-CSM1-0',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CMIP',\n",
" 'institution_id': 'CAMS'}},\n",
" 'CAS-FGOALS-f3-L-CMIP': {'locations': [{'name': 'GLADE-CAS-FGOALS-f3-L-CMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CMIP/CAS/FGOALS-f3-L',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CMIP',\n",
" 'institution_id': 'CAS'}},\n",
" 'CCCma-CanESM5-CMIP': {'locations': [{'name': 'GLADE-CCCma-CanESM5-CMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CMIP/CCCma/CanESM5',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CMIP',\n",
" 'institution_id': 'CCCma'}},\n",
" 'CNRM-CERFACS-CNRM-CM6-1-CMIP': {'locations': [{'name': 'GLADE-CNRM-CERFACS-CNRM-CM6-1-CMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CMIP/CNRM-CERFACS/CNRM-CM6-1',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CMIP',\n",
" 'institution_id': 'CNRM-CERFACS'}},\n",
" 'CNRM-CERFACS-CNRM-ESM2-1-CMIP': {'locations': [{'name': 'GLADE-CNRM-CERFACS-CNRM-ESM2-1-CMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CMIP/CNRM-CERFACS/CNRM-ESM2-1',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CMIP',\n",
" 'institution_id': 'CNRM-CERFACS'}},\n",
" 'E3SM-Project-E3SM-1-0-CMIP': {'locations': [{'name': 'GLADE-E3SM-Project-E3SM-1-0-CMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CMIP/E3SM-Project/E3SM-1-0',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CMIP',\n",
" 'institution_id': 'E3SM-Project'}},\n",
" 'EC-Earth-Consortium-EC-Earth3-CMIP': {'locations': [{'name': 'GLADE-EC-Earth-Consortium-EC-Earth3-CMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CMIP/EC-Earth-Consortium/EC-Earth3',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CMIP',\n",
" 'institution_id': 'EC-Earth-Consortium'}},\n",
" 'EC-Earth-Consortium-EC-Earth3-LR-CMIP': {'locations': [{'name': 'GLADE-EC-Earth-Consortium-EC-Earth3-LR-CMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CMIP/EC-Earth-Consortium/EC-Earth3-LR',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CMIP',\n",
" 'institution_id': 'EC-Earth-Consortium'}},\n",
" 'EC-Earth-Consortium-EC-Earth3-Veg-CMIP': {'locations': [{'name': 'GLADE-EC-Earth-Consortium-EC-Earth3-Veg-CMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CMIP/EC-Earth-Consortium/EC-Earth3-Veg',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CMIP',\n",
" 'institution_id': 'EC-Earth-Consortium'}},\n",
" 'IPSL-IPSL-CM6A-LR-CMIP': {'locations': [{'name': 'GLADE-IPSL-IPSL-CM6A-LR-CMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CMIP/IPSL/IPSL-CM6A-LR',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CMIP',\n",
" 'institution_id': 'IPSL'}},\n",
" 'MIROC-MIROC6-CMIP': {'locations': [{'name': 'GLADE-MIROC-MIROC6-CMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CMIP/MIROC/MIROC6',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CMIP',\n",
" 'institution_id': 'MIROC'}},\n",
" 'MOHC-HadGEM3-GC31-LL-CMIP': {'locations': [{'name': 'GLADE-MOHC-HadGEM3-GC31-LL-CMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CMIP/MOHC/HadGEM3-GC31-LL',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CMIP',\n",
" 'institution_id': 'MOHC'}},\n",
" 'MOHC-UKESM1-0-LL-CMIP': {'locations': [{'name': 'GLADE-MOHC-UKESM1-0-LL-CMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CMIP/MOHC/UKESM1-0-LL',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CMIP',\n",
" 'institution_id': 'MOHC'}},\n",
" 'MRI-MRI-ESM2-0-CMIP': {'locations': [{'name': 'GLADE-MRI-MRI-ESM2-0-CMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CMIP/MRI/MRI-ESM2-0',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CMIP',\n",
" 'institution_id': 'MRI'}},\n",
" 'NASA-GISS-GISS-E2-1-G-CMIP': {'locations': [{'name': 'GLADE-NASA-GISS-GISS-E2-1-G-CMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CMIP/NASA-GISS/GISS-E2-1-G',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CMIP',\n",
" 'institution_id': 'NASA-GISS'}},\n",
" 'NASA-GISS-GISS-E2-1-H-CMIP': {'locations': [{'name': 'GLADE-NASA-GISS-GISS-E2-1-H-CMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CMIP/NASA-GISS/GISS-E2-1-H',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CMIP',\n",
" 'institution_id': 'NASA-GISS'}},\n",
" 'NCAR-CESM2-CMIP': {'locations': [{'name': 'GLADE-NCAR-CESM2-CMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CMIP/NCAR/CESM2',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CMIP',\n",
" 'institution_id': 'NCAR'}},\n",
" 'NCAR-CESM2-WACCM-CMIP': {'locations': [{'name': 'GLADE-NCAR-CESM2-WACCM-CMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CMIP/NCAR/CESM2-WACCM',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CMIP',\n",
" 'institution_id': 'NCAR'}},\n",
" 'NOAA-GFDL-GFDL-AM4-CMIP': {'locations': [{'name': 'GLADE-NOAA-GFDL-GFDL-AM4-CMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CMIP/NOAA-GFDL/GFDL-AM4',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CMIP',\n",
" 'institution_id': 'NOAA-GFDL'}},\n",
" 'NOAA-GFDL-GFDL-CM4-CMIP': {'locations': [{'name': 'GLADE-NOAA-GFDL-GFDL-CM4-CMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CMIP/NOAA-GFDL/GFDL-CM4',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CMIP',\n",
" 'institution_id': 'NOAA-GFDL'}},\n",
" 'SNU-SAM0-UNICON-CMIP': {'locations': [{'name': 'GLADE-SNU-SAM0-UNICON-CMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/CMIP/SNU/SAM0-UNICON',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'CMIP',\n",
" 'institution_id': 'SNU'}},\n",
" 'NCAR-CESM2-LS3MIP': {'locations': [{'name': 'GLADE-NCAR-CESM2-LS3MIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/LS3MIP/NCAR/CESM2',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'LS3MIP',\n",
" 'institution_id': 'NCAR'}},\n",
" 'NCAR-CESM2-LUMIP': {'locations': [{'name': 'GLADE-NCAR-CESM2-LUMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/LUMIP/NCAR/CESM2',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'LUMIP',\n",
" 'institution_id': 'NCAR'}},\n",
" 'NCAR-CESM2-PAMIP': {'locations': [{'name': 'GLADE-NCAR-CESM2-PAMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/PAMIP/NCAR/CESM2',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'PAMIP',\n",
" 'institution_id': 'NCAR'}},\n",
" 'BCC-BCC-CSM2-MR-ScenarioMIP': {'locations': [{'name': 'GLADE-BCC-BCC-CSM2-MR-ScenarioMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/ScenarioMIP/BCC/BCC-CSM2-MR',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'ScenarioMIP',\n",
" 'institution_id': 'BCC'}},\n",
" 'CCCma-CanESM5-ScenarioMIP': {'locations': [{'name': 'GLADE-CCCma-CanESM5-ScenarioMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/ScenarioMIP/CCCma/CanESM5',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'ScenarioMIP',\n",
" 'institution_id': 'CCCma'}},\n",
" 'CNRM-CERFACS-CNRM-CM6-1-ScenarioMIP': {'locations': [{'name': 'GLADE-CNRM-CERFACS-CNRM-CM6-1-ScenarioMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/ScenarioMIP/CNRM-CERFACS/CNRM-CM6-1',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'ScenarioMIP',\n",
" 'institution_id': 'CNRM-CERFACS'}},\n",
" 'CNRM-CERFACS-CNRM-ESM2-1-ScenarioMIP': {'locations': [{'name': 'GLADE-CNRM-CERFACS-CNRM-ESM2-1-ScenarioMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/ScenarioMIP/CNRM-CERFACS/CNRM-ESM2-1',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'ScenarioMIP',\n",
" 'institution_id': 'CNRM-CERFACS'}},\n",
" 'IPSL-IPSL-CM6A-LR-ScenarioMIP': {'locations': [{'name': 'GLADE-IPSL-IPSL-CM6A-LR-ScenarioMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/ScenarioMIP/IPSL/IPSL-CM6A-LR',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'ScenarioMIP',\n",
" 'institution_id': 'IPSL'}},\n",
" 'MOHC-UKESM1-0-LL-ScenarioMIP': {'locations': [{'name': 'GLADE-MOHC-UKESM1-0-LL-ScenarioMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/ScenarioMIP/MOHC/UKESM1-0-LL',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'ScenarioMIP',\n",
" 'institution_id': 'MOHC'}},\n",
" 'MRI-MRI-ESM2-0-ScenarioMIP': {'locations': [{'name': 'GLADE-MRI-MRI-ESM2-0-ScenarioMIP',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/CMIP6/ScenarioMIP/MRI/MRI-ESM2-0',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'mip_era': 'CMIP6',\n",
" 'activity_id': 'ScenarioMIP',\n",
" 'institution_id': 'MRI'}}}}"
]
},
"execution_count": 10,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"with open('glade-cmip6-collection.yml', 'w') as outfile:\n",
" outfile.write(data)\n",
" \n",
"yaml_load(open('glade-cmip6-collection.yml'))"
]
},
{
"cell_type": "code",
"execution_count": 11,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"yaml 5.1\n",
"last updated: 2019-08-09 \n",
"\n",
"CPython 3.7.3\n",
"IPython 7.6.1\n",
"\n",
"compiler : GCC 7.3.0\n",
"system : Linux\n",
"release : 3.10.0-693.21.1.el7.x86_64\n",
"machine : x86_64\n",
"processor : x86_64\n",
"CPU cores : 72\n",
"interpreter: 64bit\n",
"host name : casper13\n",
"Git hash : 5e21b961b11b0940f7313e3cf70dbb997e1b37df\n"
]
}
],
"source": [
"%load_ext watermark\n",
"%watermark --iversion -g -m -v -u -d -h"
]
}
],
"metadata": {
"kernelspec": {
"display_name": "Python [conda env:analysis]",
"language": "python",
"name": "conda-env-analysis-py"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.7.3"
}
},
"nbformat": 4,
"nbformat_minor": 4
}
Raw
cmip6-input.yaml
activities:
AerChemMIP:
NCAR:
- CESM2-WACCM
CFMIP:
NCAR:
- CESM2
CMIP:
AWI:
- AWI-CM-1-1-MR
BCC:
- BCC-CSM2-MR
- BCC-ESM1
CAMS:
- CAMS-CSM1-0
CAS:
- FGOALS-f3-L
CCCma:
- CanESM5
CNRM-CERFACS:
- CNRM-CM6-1
- CNRM-ESM2-1
E3SM-Project:
- E3SM-1-0
EC-Earth-Consortium:
- EC-Earth3
- EC-Earth3-LR
- EC-Earth3-Veg
IPSL:
- IPSL-CM6A-LR
MIROC:
- MIROC6
MOHC:
- HadGEM3-GC31-LL
- UKESM1-0-LL
MRI:
- MRI-ESM2-0
NASA-GISS:
- GISS-E2-1-G
- GISS-E2-1-H
NCAR:
- CESM2
- CESM2-WACCM
NOAA-GFDL:
- GFDL-AM4
- GFDL-CM4
SNU:
- SAM0-UNICON
LS3MIP:
NCAR:
- CESM2
LUMIP:
NCAR:
- CESM2
PAMIP:
NCAR:
- CESM2
ScenarioMIP:
BCC:
- BCC-CSM2-MR
CCCma:
- CanESM5
CNRM-CERFACS:
- CNRM-CM6-1
- CNRM-ESM2-1
IPSL:
- IPSL-CM6A-LR
MOHC:
- UKESM1-0-LL
MRI:
- MRI-ESM2-0
collection_name: GLADE-CMIP6
collection_type: cmip6
root_dir: /glade/collections/cmip/CMIP6
Raw
cmip6-template.yaml
name: {{ collection_name }}
collection_type: {{ collection_type }}
data_sources:
{% for activity_id, activity_vals in activities.items() %}
{% for institution_id, institute_vals in activity_vals.items() %}
{% for model in institute_vals %}
{{ institution_id }}-{{ model }}-{{ activity_id }}:
locations:
- name: GLADE-{{ institution_id }}-{{ model }}-{{ activity_id }}
loc_type: posix
direct_access: True
urlpath: {{ root_dir }}/{{ activity_id }}/{{ institution_id }}/{{ model }}
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
mip_era: CMIP6
activity_id: {{ activity_id }}
institution_id: {{ institution_id }}
{% endfor %}
{% endfor %}
{% endfor %}
Raw
glade-cmip5-collection.yml
name: GLADE-CMIP5
collection_type: cmip5
data_sources:
CCCma-CanCM4-output:
locations:
- name: GLADE-CCCma-CanCM4-output
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output/CCCma/CanCM4
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output
activity: CMIP5
institute: CCCma
CCCma-CanESM2-output:
locations:
- name: GLADE-CCCma-CanESM2-output
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output/CCCma/CanESM2
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output
activity: CMIP5
institute: CCCma
BCC-bcc-csm1-1-output1:
locations:
- name: GLADE-BCC-bcc-csm1-1-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/BCC/bcc-csm1-1
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: BCC
BCC-bcc-csm1-1-m-output1:
locations:
- name: GLADE-BCC-bcc-csm1-1-m-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/BCC/bcc-csm1-1-m
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: BCC
BNU-BNU-ESM-output1:
locations:
- name: GLADE-BNU-BNU-ESM-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/BNU/BNU-ESM
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: BNU
CCCma-CanCM4-output1:
locations:
- name: GLADE-CCCma-CanCM4-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/CCCma/CanCM4
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: CCCma
CCCma-CanESM2-output1:
locations:
- name: GLADE-CCCma-CanESM2-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/CCCma/CanESM2
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: CCCma
CMCC-CMCC-CESM-output1:
locations:
- name: GLADE-CMCC-CMCC-CESM-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/CMCC/CMCC-CESM
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: CMCC
CMCC-CMCC-CM-output1:
locations:
- name: GLADE-CMCC-CMCC-CM-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/CMCC/CMCC-CM
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: CMCC
CMCC-CMCC-CMS-output1:
locations:
- name: GLADE-CMCC-CMCC-CMS-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/CMCC/CMCC-CMS
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: CMCC
CNRM-CERFACS-CNRM-CM5-output1:
locations:
- name: GLADE-CNRM-CERFACS-CNRM-CM5-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/CNRM-CERFACS/CNRM-CM5
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: CNRM-CERFACS
CNRM-CERFACS-CNRM-CM5-2-output1:
locations:
- name: GLADE-CNRM-CERFACS-CNRM-CM5-2-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/CNRM-CERFACS/CNRM-CM5-2
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: CNRM-CERFACS
CSIRO-BOM-ACCESS1-0-output1:
locations:
- name: GLADE-CSIRO-BOM-ACCESS1-0-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/CSIRO-BOM/ACCESS1-0
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: CSIRO-BOM
CSIRO-BOM-ACCESS1-3-output1:
locations:
- name: GLADE-CSIRO-BOM-ACCESS1-3-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/CSIRO-BOM/ACCESS1-3
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: CSIRO-BOM
CSIRO-BOM-ACCESS1-output1:
locations:
- name: GLADE-CSIRO-BOM-ACCESS1-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/CSIRO-BOM/ACCESS1
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: CSIRO-BOM
CSIRO-QCCCE-CSIRO-Mk3-6-0-output1:
locations:
- name: GLADE-CSIRO-QCCCE-CSIRO-Mk3-6-0-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/CSIRO-QCCCE/CSIRO-Mk3-6-0
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: CSIRO-QCCCE
FIO-FIO-ESM-output1:
locations:
- name: GLADE-FIO-FIO-ESM-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/FIO/FIO-ESM
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: FIO
FIO-fio-esm-output1:
locations:
- name: GLADE-FIO-fio-esm-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/FIO/fio-esm
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: FIO
ICHEC-EC-EARTH-output1:
locations:
- name: GLADE-ICHEC-EC-EARTH-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/ICHEC/EC-EARTH
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: ICHEC
INM-inmcm4-output1:
locations:
- name: GLADE-INM-inmcm4-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/INM/inmcm4
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: INM
INPE-HadGEM2-ES-output1:
locations:
- name: GLADE-INPE-HadGEM2-ES-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/INPE/HadGEM2-ES
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: INPE
IPSL-IPSL-CM5A-LR-output1:
locations:
- name: GLADE-IPSL-IPSL-CM5A-LR-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/IPSL/IPSL-CM5A-LR
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: IPSL
IPSL-IPSL-CM5A-MR-output1:
locations:
- name: GLADE-IPSL-IPSL-CM5A-MR-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/IPSL/IPSL-CM5A-MR
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: IPSL
IPSL-IPSL-CM5B-LR-output1:
locations:
- name: GLADE-IPSL-IPSL-CM5B-LR-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/IPSL/IPSL-CM5B-LR
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: IPSL
LASG-CESS-FGOALS-g2-output1:
locations:
- name: GLADE-LASG-CESS-FGOALS-g2-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/LASG-CESS/FGOALS-g2
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: LASG-CESS
LASG-IAP-FGOALS-s2-output1:
locations:
- name: GLADE-LASG-IAP-FGOALS-s2-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/LASG-IAP/FGOALS-s2
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: LASG-IAP
MIROC-MIROC-ESM-output1:
locations:
- name: GLADE-MIROC-MIROC-ESM-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/MIROC/MIROC-ESM
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: MIROC
MIROC-MIROC-ESM-CHEM-output1:
locations:
- name: GLADE-MIROC-MIROC-ESM-CHEM-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/MIROC/MIROC-ESM-CHEM
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: MIROC
MIROC-MIROC4h-output1:
locations:
- name: GLADE-MIROC-MIROC4h-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/MIROC/MIROC4h
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: MIROC
MIROC-MIROC5-output1:
locations:
- name: GLADE-MIROC-MIROC5-output1
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NOAA-GFDL-GFDL-CM3-output1:
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NCAR-CCSM4-output2:
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NCC-NorESM1-M-output2:
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NSF-DOE-NCAR-CESM1-WACCM-output2:
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Raw
glade-cmip6-collection.yml
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