andreas-h · March 12, 2018 16:26
diff --git a/easybuild-OpenMPI-2.0.2-20180312.171228.iUzyn.log b/easybuild-OpenMPI-2.0.2-20180312.171228.iUzyn.log
 == 2018-03-12 17:12:28,260 easyblock.py:264 INFO This is EasyBuild 3.5.0 (framework: 3.5.0, easyblocks: 3.5.0) on host node18.cluster.
 == 2018-03-12 17:12:28,260 easyblock.py:270 INFO This is easyblock ConfigureMake from module easybuild.easyblocks.generic.configuremake (/home/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyblocks-3.5.0-py2.7.egg/easybuild/easyblocks/generic/configuremake.pyo)
 == 2018-03-12 17:12:28,261 easyblock.py:815 INFO Build dir set to /dev/shm/eb-build/OpenMPI/2.0.2/GCC-6.3.0-2.27
 == 2018-03-12 17:12:28,261 config.py:460 DEBUG software install path as specified by 'installpath' and 'subdir_software': /home/eb/software
 == 2018-03-12 17:12:28,261 easyconfig.py:1688 DEBUG Determining software installation subdir for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x25de110>
 == 2018-03-12 17:12:28,261 easyconfig.py:1694 DEBUG Obtained subdir OpenMPI/2.0.2-GCC-6.3.0-2.27
 == 2018-03-12 17:12:28,261 easyblock.py:856 INFO Software install dir set to /home/eb/software/OpenMPI/2.0.2-GCC-6.3.0-2.27
 == 2018-03-12 17:12:28,261 config.py:460 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /home/eb/modules
 == 2018-03-12 17:12:28,261 easyblock.py:861 INFO Module install dir set to /home/eb/modules/all
 == 2018-03-12 17:12:28,261 easyblock.py:249 INFO Init completed for application name OpenMPI version 2.0.2
 == 2018-03-12 17:12:28,261 easyblock.py:2659 INFO Obtained application instance of for OpenMPI (easyblock: ConfigureMake)
 == 2018-03-12 17:12:28,261 easyblock.py:2672 DEBUG Skip set to False
 == 2018-03-12 17:12:28,261 build_log.py:233 INFO building and installing OpenMPI/2.0.2-GCC-6.3.0-2.27...
 == 2018-03-12 17:12:28,261 easyblock.py:2438 DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True
 == 2018-03-12 17:12:28,262 build_log.py:233 INFO fetching files...
 == 2018-03-12 17:12:28,262 easyblock.py:2446 INFO Starting fetch step
 == 2018-03-12 17:12:28,262 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x25de110>
 == 2018-03-12 17:12:28,262 templates.py:175 DEBUG version found in easyconfig is 2.0.2
 == 2018-03-12 17:12:28,262 templates.py:219 DEBUG name: github_account, config: None
 == 2018-03-12 17:12:28,262 templates.py:219 DEBUG name: name, config: OpenMPI
 == 2018-03-12 17:12:28,262 templates.py:219 DEBUG name: version, config: 2.0.2
 == 2018-03-12 17:12:28,262 templates.py:219 DEBUG name: versionsuffix, config: 
 == 2018-03-12 17:12:28,262 templates.py:219 DEBUG name: versionprefix, config: 
 == 2018-03-12 17:12:28,262 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x25de110>
 == 2018-03-12 17:12:28,262 templates.py:175 DEBUG version found in easyconfig is 2.0.2
 == 2018-03-12 17:12:28,262 templates.py:219 DEBUG name: github_account, config: None
 == 2018-03-12 17:12:28,262 templates.py:219 DEBUG name: name, config: OpenMPI
 == 2018-03-12 17:12:28,263 templates.py:219 DEBUG name: version, config: 2.0.2
 == 2018-03-12 17:12:28,263 templates.py:219 DEBUG name: versionsuffix, config: 
 == 2018-03-12 17:12:28,263 templates.py:219 DEBUG name: versionprefix, config: 
 == 2018-03-12 17:12:28,263 easyblock.py:2452 INFO Running method fetch_step part of step fetch
 == 2018-03-12 17:12:28,263 easyblock.py:1557 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
 == 2018-03-12 17:12:28,263 filetools.py:343 INFO Command eb found at /home/eb/software/EasyBuild/3.5.0/bin/eb
 == 2018-03-12 17:12:28,263 tools.py:263 DEBUG Also considering installation prefix /home/eb/software/EasyBuild/3.5.0...
 == 2018-03-12 17:12:28,263 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /home/hilboll/eb/easyconfigs/easybuild/easyconfigs
 == 2018-03-12 17:12:28,263 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /home/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs/easybuild/easyconfigs
 == 2018-03-12 17:12:28,263 tools.py:268 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs
 == 2018-03-12 17:12:28,264 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /home/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/vsc_install-0.10.26-py2.7.egg/easybuild/easyconfigs
 == 2018-03-12 17:12:28,264 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /home/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/easybuild/easyconfigs
 == 2018-03-12 17:12:28,264 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /home/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_framework-3.5.0-py2.7.egg/easybuild/easyconfigs
 == 2018-03-12 17:12:28,264 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /home/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyblocks-3.5.0-py2.7.egg/easybuild/easyconfigs
 == 2018-03-12 17:12:28,264 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /home/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs
 == 2018-03-12 17:12:28,264 tools.py:272 DEBUG Added /home/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
 == 2018-03-12 17:12:28,264 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /home/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild/easyconfigs
 == 2018-03-12 17:12:28,264 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python27.zip/easybuild/easyconfigs
 == 2018-03-12 17:12:28,264 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/easybuild/easyconfigs
 == 2018-03-12 17:12:28,264 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/plat-linux2/easybuild/easyconfigs
 == 2018-03-12 17:12:28,264 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-tk/easybuild/easyconfigs
 == 2018-03-12 17:12:28,264 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-old/easybuild/easyconfigs
 == 2018-03-12 17:12:28,264 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-dynload/easybuild/easyconfigs
 == 2018-03-12 17:12:28,265 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/easybuild/easyconfigs
 == 2018-03-12 17:12:28,265 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/gtk-2.0/easybuild/easyconfigs
 == 2018-03-12 17:12:28,265 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/site-packages/easybuild/easyconfigs
 == 2018-03-12 17:12:28,265 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /home/eb/software/EasyBuild/3.5.0/easybuild/easyconfigs
 == 2018-03-12 17:12:28,265 easyblock.py:646 INFO Found file openmpi-2.0.2.tar.gz at /home/eb/sources/o/OpenMPI/openmpi-2.0.2.tar.gz
 == 2018-03-12 17:12:28,265 easyblock.py:362 DEBUG File /home/eb/sources/o/OpenMPI/openmpi-2.0.2.tar.gz found for source openmpi-2.0.2.tar.gz
 == 2018-03-12 17:12:28,265 easyblock.py:374 INFO Added sources: [{'path': '/home/eb/sources/o/OpenMPI/openmpi-2.0.2.tar.gz', 'cmd': None, 'finalpath': '/dev/shm/eb-build/OpenMPI/2.0.2/GCC-6.3.0-2.27', 'name': 'openmpi-2.0.2.tar.gz', 'checksum': '886698becc5bea8c151c0af2074b8392'}]
 == 2018-03-12 17:12:28,266 easyblock.py:1598 INFO no patches provided
 == 2018-03-12 17:12:28,266 filetools.py:652 DEBUG Using blocksize 16777216 for calculating the checksum
 == 2018-03-12 17:12:28,295 easyblock.py:1608 INFO md5 checksum for /home/eb/sources/o/OpenMPI/openmpi-2.0.2.tar.gz: 886698becc5bea8c151c0af2074b8392
 == 2018-03-12 17:12:28,295 filetools.py:652 DEBUG Using blocksize 16777216 for calculating the checksum
 == 2018-03-12 17:12:28,355 easyblock.py:1608 INFO sha256 checksum for /home/eb/sources/o/OpenMPI/openmpi-2.0.2.tar.gz: 32914cc64780d3980066f3be3920b028cd381c94d1262a55415fc1d002bae0a5
 == 2018-03-12 17:12:28,355 easyconfig.py:1676 DEBUG Determining full module name for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x25de110> (force_visible: False)
 == 2018-03-12 17:12:28,355 easyconfig.py:1656 DEBUG No alternative software name specified to determine module name with
 == 2018-03-12 17:12:28,356 utilities.py:103 DEBUG Module name OpenMPI/2.0.2-GCC-6.3.0-2.27 validated
 == 2018-03-12 17:12:28,356 easyconfig.py:1683 DEBUG Obtained valid full module name OpenMPI/2.0.2-GCC-6.3.0-2.27
 == 2018-03-12 17:12:28,356 config.py:460 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /home/eb/modules
 == 2018-03-12 17:12:28,356 easyblock.py:1641 INFO Checking dirs that need to be created: ['/home/eb/software/OpenMPI/2.0.2-GCC-6.3.0-2.27', '/home/eb/modules/all/OpenMPI', '/home/eb/modules/mpi/OpenMPI']
 == 2018-03-12 17:12:28,356 filetools.py:1135 DEBUG Not creating existing path /home/eb/software/OpenMPI/2.0.2-GCC-6.3.0-2.27
 == 2018-03-12 17:12:28,356 filetools.py:1135 DEBUG Not creating existing path /home/eb/modules/all/OpenMPI
 == 2018-03-12 17:12:28,356 filetools.py:1135 DEBUG Not creating existing path /home/eb/modules/mpi/OpenMPI
 == 2018-03-12 17:12:28,356 easyblock.py:2438 DEBUG Not skipping ready step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True
 == 2018-03-12 17:12:28,357 build_log.py:233 INFO creating build dir, resetting environment...
 == 2018-03-12 17:12:28,357 easyblock.py:2446 INFO Starting ready step
 == 2018-03-12 17:12:28,357 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x25de110>
 == 2018-03-12 17:12:28,357 templates.py:175 DEBUG version found in easyconfig is 2.0.2
 == 2018-03-12 17:12:28,357 templates.py:219 DEBUG name: github_account, config: None
 == 2018-03-12 17:12:28,357 templates.py:219 DEBUG name: name, config: OpenMPI
 == 2018-03-12 17:12:28,357 templates.py:219 DEBUG name: version, config: 2.0.2
 == 2018-03-12 17:12:28,357 templates.py:219 DEBUG name: versionsuffix, config: 
 == 2018-03-12 17:12:28,357 templates.py:219 DEBUG name: versionprefix, config: 
 == 2018-03-12 17:12:28,357 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x25de110>
 == 2018-03-12 17:12:28,357 templates.py:175 DEBUG version found in easyconfig is 2.0.2
 == 2018-03-12 17:12:28,357 templates.py:219 DEBUG name: github_account, config: None
 == 2018-03-12 17:12:28,357 templates.py:219 DEBUG name: name, config: OpenMPI
 == 2018-03-12 17:12:28,358 templates.py:219 DEBUG name: version, config: 2.0.2
 == 2018-03-12 17:12:28,358 templates.py:219 DEBUG name: versionsuffix, config: 
 == 2018-03-12 17:12:28,358 templates.py:219 DEBUG name: versionprefix, config: 
 == 2018-03-12 17:12:28,358 easyblock.py:2452 INFO Running method check_readiness_step part of step ready
 == 2018-03-12 17:12:28,358 easyblock.py:1502 DEBUG Desired parallelism specified via 'parallel' build option: None
 == 2018-03-12 17:12:28,358 affinity.py:211 DEBUG sched_getaffinity for pid 173065 returned cpuset 0-27
 == 2018-03-12 17:12:28,359 run.py:163 DEBUG run_cmd: running cmd ulimit -u (in /home/hilboll/eb/easyconfigs)
 == 2018-03-12 17:12:28,359 run.py:183 INFO running cmd: ulimit -u 
 == 2018-03-12 17:12:28,367 run.py:488 DEBUG cmd "ulimit -u" exited with exit code 0 and output:
 4096

 == 2018-03-12 17:12:28,368 run.py:522 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
 == 2018-03-12 17:12:28,368 easyblock.py:1505 INFO Setting parallelism: 28
 == 2018-03-12 17:12:28,368 modules.py:641 DEBUG Current MODULEPATH: /home/eb/modules/all
 == 2018-03-12 17:12:28,368 modules.py:648 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command
 == 2018-03-12 17:12:28,368 modules.py:648 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
 == 2018-03-12 17:12:28,369 modules.py:652 DEBUG Running module command '/opt/ohpc/admin/lmod/lmod/libexec/lmod python --terse list' from /home/hilboll/eb/easyconfigs
 == 2018-03-12 17:12:28,398 modules.py:658 DEBUG Output of module command '/opt/ohpc/admin/lmod/lmod/libexec/lmod python --terse list': stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/eb/modules/all";
 os.environ["MODULEPATH"] = "/home/eb/modules/all";
 os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/eb/modules/all";
 os.environ["MODULEPATH"] = "/home/eb/modules/all";
 os.environ["_ModuleTable001_"] = "X01vZHVsZVRhYmxlXz17WyJhY3RpdmVTaXplIl09MSxiYXNlTXBhdGhBPXsiL2hvbWUvZWIvbW9kdWxlcy9hbGwiLH0sWyJjX3JlYnVpbGRUaW1lIl09ZmFsc2UsWyJjX3Nob3J0VGltZSJdPWZhbHNlLGZhbWlseT17fSxpbmFjdGl2ZT17fSxtVD17RWFzeUJ1aWxkPXtbIkZOIl09Ii9ob21lL2ViL21vZHVsZXMvYWxsL0Vhc3lCdWlsZC8zLjUuMC5sdWEiLFsiZGVmYXVsdCJdPTEsWyJmdWxsTmFtZSJdPSJFYXN5QnVpbGQvMy41LjAiLFsibG9hZE9yZGVyIl09MSxwcm9wVD17fSxbInNob3J0Il09IkVhc3lCdWlsZCIsWyJzdGF0dXMiXT0iYWN0aXZlIix9LH0sbXBhdGhBPXsiL2hvbWUvZWIvbW9kdWxlcy9hbGwiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL29wdC9vaHBjL3B1";
 os.environ["_ModuleTable002_"] = "Yi9tb2R1bGVmaWxlcyIsWyJ2ZXJzaW9uIl09Mix9";
 os.environ["_ModuleTable_Sz_"] = "2";
 ; stderr: EasyBuild/3.5.0

 == 2018-03-12 17:12:28,398 modules.py:1109 DEBUG Output found in stdout, seems like '/opt/ohpc/admin/lmod/lmod/libexec/lmod python --terse list' ran fine
 == 2018-03-12 17:12:28,398 modules.py:695 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to []
 == 2018-03-12 17:12:28,399 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
 == 2018-03-12 17:12:28,399 modules.py:695 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
 == 2018-03-12 17:12:28,399 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
 == 2018-03-12 17:12:28,399 easyblock.py:1510 WARNING Loaded modules detected: ['EasyBuild/3.5.0']
 == 2018-03-12 17:12:28,399 easyconfig.py:608 DEBUG Dependencies BEFORE filtering: [{'external_module_metadata': {}, 'full_mod_name': 'hwloc/1.11.5-GCC-6.3.0-2.27', 'toolchain': {'version': '6.3.0-2.27', 'name': 'GCC'}, 'name': 'hwloc', 'dummy': False, 'short_mod_name': 'hwloc/1.11.5-GCC-6.3.0-2.27', 'external_module': False, 'versionsuffix': '', 'version': '1.11.5', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}]
 == 2018-03-12 17:12:28,399 toolchain.py:376 DEBUG add_dependencies: adding toolchain dependencies [{'external_module_metadata': {}, 'full_mod_name': 'hwloc/1.11.5-GCC-6.3.0-2.27', 'toolchain': {'version': '6.3.0-2.27', 'name': 'GCC'}, 'name': 'hwloc', 'dummy': False, 'short_mod_name': 'hwloc/1.11.5-GCC-6.3.0-2.27', 'external_module': False, 'versionsuffix': '', 'version': '1.11.5', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}]
 == 2018-03-12 17:12:28,399 toolchain.py:386 DEBUG add_dependencies: MODULEPATH: /home/eb/modules/all
 == 2018-03-12 17:12:28,399 modules.py:641 DEBUG Current MODULEPATH: /home/eb/modules/all
 == 2018-03-12 17:12:28,399 modules.py:648 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command
 == 2018-03-12 17:12:28,399 modules.py:648 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
 == 2018-03-12 17:12:28,400 modules.py:652 DEBUG Running module command '/opt/ohpc/admin/lmod/lmod/libexec/lmod python --terse --show-hidden avail hwloc/1.11.5-GCC-6.3.0-2.27' from /home/hilboll/eb/easyconfigs
 == 2018-03-12 17:12:28,573 modules.py:658 DEBUG Output of module command '/opt/ohpc/admin/lmod/lmod/libexec/lmod python --terse --show-hidden avail hwloc/1.11.5-GCC-6.3.0-2.27': stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/eb/modules/all";
 os.environ["MODULEPATH"] = "/home/eb/modules/all";
 os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/eb/modules/all";
 os.environ["MODULEPATH"] = "/home/eb/modules/all";
 os.environ["_ModuleTable001_"] = "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";
 os.environ["_ModuleTable002_"] = "Yi9tb2R1bGVmaWxlcyIsWyJ2ZXJzaW9uIl09Mix9";
 os.environ["_ModuleTable_Sz_"] = "2";
 ; stderr: /home/eb/modules/all:
 hwloc/1.11.5-GCC-6.3.0-2.27

 == 2018-03-12 17:12:28,573 modules.py:1109 DEBUG Output found in stdout, seems like '/opt/ohpc/admin/lmod/lmod/libexec/lmod python --terse --show-hidden avail hwloc/1.11.5-GCC-6.3.0-2.27' ran fine
 == 2018-03-12 17:12:28,573 modules.py:695 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to []
 == 2018-03-12 17:12:28,573 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
 == 2018-03-12 17:12:28,574 modules.py:695 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
 == 2018-03-12 17:12:28,574 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
 == 2018-03-12 17:12:28,574 modules.py:430 DEBUG 'module available hwloc/1.11.5-GCC-6.3.0-2.27' gave 1 answers: ['hwloc/1.11.5-GCC-6.3.0-2.27']
 == 2018-03-12 17:12:28,574 easyconfig.py:608 DEBUG Dependencies BEFORE filtering: [{'external_module_metadata': {}, 'full_mod_name': 'hwloc/1.11.5-GCC-6.3.0-2.27', 'toolchain': {'version': '6.3.0-2.27', 'name': 'GCC'}, 'name': 'hwloc', 'dummy': False, 'short_mod_name': 'hwloc/1.11.5-GCC-6.3.0-2.27', 'external_module': False, 'versionsuffix': '', 'version': '1.11.5', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}]
 == 2018-03-12 17:12:28,574 easyblock.py:2452 INFO Running method make_builddir part of step ready
 == 2018-03-12 17:12:28,574 easyblock.py:825 DEBUG Creating the build directory /dev/shm/eb-build/OpenMPI/2.0.2/GCC-6.3.0-2.27 (cleanup: True)
 == 2018-03-12 17:12:28,574 easyblock.py:881 INFO Found old directory /dev/shm/eb-build/OpenMPI/2.0.2/GCC-6.3.0-2.27
 == 2018-03-12 17:12:28,631 filetools.py:1203 INFO Path /dev/shm/eb-build/OpenMPI/2.0.2/GCC-6.3.0-2.27 successfully removed.
 == 2018-03-12 17:12:28,631 easyblock.py:888 INFO Removed old directory /dev/shm/eb-build/OpenMPI/2.0.2/GCC-6.3.0-2.27
 == 2018-03-12 17:12:28,631 filetools.py:1107 INFO Creating directory /dev/shm/eb-build/OpenMPI/2.0.2/GCC-6.3.0-2.27 (parents: True, set_gid: True, sticky: False)
 == 2018-03-12 17:12:28,631 filetools.py:989 INFO Adjusting permissions recursively for /dev/shm/eb-build/OpenMPI/2.0.2/GCC-6.3.0-2.27
 == 2018-03-12 17:12:28,632 easyblock.py:2452 INFO Running method env_reset_changes part of step ready
 == 2018-03-12 17:12:28,632 easyblock.py:2452 INFO Running method handle_iterate_opts part of step ready
 == 2018-03-12 17:12:28,632 easyblock.py:2438 DEBUG Not skipping source step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True
 == 2018-03-12 17:12:28,632 build_log.py:233 INFO unpacking...
 == 2018-03-12 17:12:28,632 easyblock.py:2446 INFO Starting source step
 == 2018-03-12 17:12:28,632 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x25de110>
 == 2018-03-12 17:12:28,632 templates.py:175 DEBUG version found in easyconfig is 2.0.2
 == 2018-03-12 17:12:28,632 templates.py:219 DEBUG name: github_account, config: None
 == 2018-03-12 17:12:28,632 templates.py:219 DEBUG name: name, config: OpenMPI
 == 2018-03-12 17:12:28,632 templates.py:219 DEBUG name: version, config: 2.0.2
 == 2018-03-12 17:12:28,632 templates.py:219 DEBUG name: versionsuffix, config: 
 == 2018-03-12 17:12:28,632 templates.py:219 DEBUG name: versionprefix, config: 
 == 2018-03-12 17:12:28,633 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x25de110>
 == 2018-03-12 17:12:28,633 templates.py:175 DEBUG version found in easyconfig is 2.0.2
 == 2018-03-12 17:12:28,633 templates.py:219 DEBUG name: github_account, config: None
 == 2018-03-12 17:12:28,633 templates.py:219 DEBUG name: name, config: OpenMPI
 == 2018-03-12 17:12:28,633 templates.py:219 DEBUG name: version, config: 2.0.2
 == 2018-03-12 17:12:28,633 templates.py:219 DEBUG name: versionsuffix, config: 
 == 2018-03-12 17:12:28,633 templates.py:219 DEBUG name: versionprefix, config: 
 == 2018-03-12 17:12:28,633 easyblock.py:2452 INFO Running method checksum_step part of step source
 == 2018-03-12 17:12:28,633 filetools.py:652 DEBUG Using blocksize 16777216 for calculating the checksum
 == 2018-03-12 17:12:28,663 filetools.py:700 DEBUG Computed md5 checksum for /home/eb/sources/o/OpenMPI/openmpi-2.0.2.tar.gz: 886698becc5bea8c151c0af2074b8392 (correct checksum: 886698becc5bea8c151c0af2074b8392)
 == 2018-03-12 17:12:28,663 easyblock.py:1655 INFO Checksum verification for /home/eb/sources/o/OpenMPI/openmpi-2.0.2.tar.gz using 886698becc5bea8c151c0af2074b8392 passed.
 == 2018-03-12 17:12:28,663 easyblock.py:2452 INFO Running method extract_step part of step source
 == 2018-03-12 17:12:28,663 easyblock.py:1666 INFO Unpacking source openmpi-2.0.2.tar.gz
 == 2018-03-12 17:12:28,663 filetools.py:1135 DEBUG Not creating existing path /dev/shm/eb-build/OpenMPI/2.0.2/GCC-6.3.0-2.27
 == 2018-03-12 17:12:28,663 filetools.py:309 DEBUG Unpacking /home/eb/sources/o/OpenMPI/openmpi-2.0.2.tar.gz in directory /dev/shm/eb-build/OpenMPI/2.0.2/GCC-6.3.0-2.27.
 == 2018-03-12 17:12:28,664 run.py:163 DEBUG run_cmd: running cmd tar xzf /home/eb/sources/o/OpenMPI/openmpi-2.0.2.tar.gz (in /dev/shm/eb-build/OpenMPI/2.0.2/GCC-6.3.0-2.27)
 == 2018-03-12 17:12:28,664 run.py:183 INFO running cmd: tar xzf /home/eb/sources/o/OpenMPI/openmpi-2.0.2.tar.gz 
 == 2018-03-12 17:12:29,130 run.py:488 DEBUG cmd "tar xzf /home/eb/sources/o/OpenMPI/openmpi-2.0.2.tar.gz" exited with exit code 0 and output:

 == 2018-03-12 17:12:29,130 run.py:522 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
 == 2018-03-12 17:12:29,130 filetools.py:739 DEBUG Last dir list ['Makefile.am', 'Makefile.in', 'configure', 'examples', 'orte', 'LICENSE', 'autogen.pl', 'NEWS', 'ompi', 'VERSION', 'config', 'configure.ac', 'README', 'test', 'oshmem', 'README.JAVA.txt', 'aclocal.m4', 'INSTALL', 'Makefile.ompi-rules', 'Doxyfile', 'opal', 'contrib', 'AUTHORS']
 == 2018-03-12 17:12:29,130 filetools.py:740 DEBUG Possible new dir /dev/shm/eb-build/OpenMPI/2.0.2/GCC-6.3.0-2.27/openmpi-2.0.2 found
 == 2018-03-12 17:12:29,131 easyblock.py:2438 DEBUG Not skipping patch step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True
 == 2018-03-12 17:12:29,131 build_log.py:233 INFO patching...
 == 2018-03-12 17:12:29,131 easyblock.py:2446 INFO Starting patch step
 == 2018-03-12 17:12:29,131 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x25de110>
 == 2018-03-12 17:12:29,131 templates.py:175 DEBUG version found in easyconfig is 2.0.2
 == 2018-03-12 17:12:29,131 templates.py:219 DEBUG name: github_account, config: None
 == 2018-03-12 17:12:29,131 templates.py:219 DEBUG name: name, config: OpenMPI
 == 2018-03-12 17:12:29,131 templates.py:219 DEBUG name: version, config: 2.0.2
 == 2018-03-12 17:12:29,131 templates.py:219 DEBUG name: versionsuffix, config: 
 == 2018-03-12 17:12:29,131 templates.py:219 DEBUG name: versionprefix, config: 
 == 2018-03-12 17:12:29,131 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x25de110>
 == 2018-03-12 17:12:29,132 templates.py:175 DEBUG version found in easyconfig is 2.0.2
 == 2018-03-12 17:12:29,132 templates.py:219 DEBUG name: github_account, config: None
 == 2018-03-12 17:12:29,132 templates.py:219 DEBUG name: name, config: OpenMPI
 == 2018-03-12 17:12:29,132 templates.py:219 DEBUG name: version, config: 2.0.2
 == 2018-03-12 17:12:29,132 templates.py:219 DEBUG name: versionsuffix, config: 
 == 2018-03-12 17:12:29,132 templates.py:219 DEBUG name: versionprefix, config: 
 == 2018-03-12 17:12:29,132 easyblock.py:2452 INFO Running method patch_step part of step patch
 == 2018-03-12 17:12:29,132 easyblock.py:2438 DEBUG Not skipping prepare step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True
 == 2018-03-12 17:12:29,132 build_log.py:233 INFO preparing...
 == 2018-03-12 17:12:29,132 easyblock.py:2446 INFO Starting prepare step
 == 2018-03-12 17:12:29,132 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x25de110>
 == 2018-03-12 17:12:29,132 templates.py:175 DEBUG version found in easyconfig is 2.0.2
 == 2018-03-12 17:12:29,132 templates.py:219 DEBUG name: github_account, config: None
 == 2018-03-12 17:12:29,133 templates.py:219 DEBUG name: name, config: OpenMPI
 == 2018-03-12 17:12:29,133 templates.py:219 DEBUG name: version, config: 2.0.2
 == 2018-03-12 17:12:29,133 templates.py:219 DEBUG name: versionsuffix, config: 
 == 2018-03-12 17:12:29,133 templates.py:219 DEBUG name: versionprefix, config: 
 == 2018-03-12 17:12:29,133 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x25de110>
 == 2018-03-12 17:12:29,133 templates.py:175 DEBUG version found in easyconfig is 2.0.2
 == 2018-03-12 17:12:29,133 templates.py:219 DEBUG name: github_account, config: None
 == 2018-03-12 17:12:29,133 templates.py:219 DEBUG name: name, config: OpenMPI
 == 2018-03-12 17:12:29,133 templates.py:219 DEBUG name: version, config: 2.0.2
 == 2018-03-12 17:12:29,133 templates.py:219 DEBUG name: versionsuffix, config: 
 == 2018-03-12 17:12:29,133 templates.py:219 DEBUG name: versionprefix, config: 
 == 2018-03-12 17:12:29,133 easyblock.py:2452 INFO Running method prepare_step part of step prepare
 == 2018-03-12 17:12:29,133 modules.py:641 DEBUG Current MODULEPATH: /home/eb/modules/all
 == 2018-03-12 17:12:29,134 modules.py:648 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command
 == 2018-03-12 17:12:29,134 modules.py:648 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
 == 2018-03-12 17:12:29,134 modules.py:652 DEBUG Running module command '/opt/ohpc/admin/lmod/lmod/libexec/lmod python show GCC/6.3.0-2.27' from /dev/shm/eb-build/OpenMPI/2.0.2/GCC-6.3.0-2.27/openmpi-2.0.2
 == 2018-03-12 17:12:29,234 modules.py:658 DEBUG Output of module command '/opt/ohpc/admin/lmod/lmod/libexec/lmod python show GCC/6.3.0-2.27': stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/eb/modules/all";
 os.environ["MODULEPATH"] = "/home/eb/modules/all";
 os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/eb/modules/all";
 os.environ["MODULEPATH"] = "/home/eb/modules/all";
 os.environ["_ModuleTable001_"] = "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";
 os.environ["_ModuleTable002_"] = "Yi9tb2R1bGVmaWxlcyIsWyJ2ZXJzaW9uIl09Mix9";
 os.environ["_ModuleTable_Sz_"] = "2";
 ; stderr: ----------------------------------------------------------------------------
   /home/eb/modules/all/GCC/6.3.0-2.27.lua:
 ----------------------------------------------------------------------------
 help([[The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada,
 as well as libraries for these languages (libstdc++, libgcj,...). - Homepage: http://gcc.gnu.org/]])
 whatis("Description: The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada,
 as well as libraries for these languages (libstdc++, libgcj,...). - Homepage: http://gcc.gnu.org/")
 conflict("GCC")
 load("GCCcore/6.3.0")
 load("binutils/2.27-GCCcore-6.3.0")
 setenv("EBROOTGCC","/home/eb/software/GCCcore/6.3.0")
 setenv("EBVERSIONGCC","6.3.0")
 setenv("EBDEVELGCC","/home/eb/software/GCC/6.3.0-2.27/easybuild/GCC-6.3.0-2.27-easybuild-devel")


 == 2018-03-12 17:12:29,234 modules.py:1109 DEBUG Output found in stdout, seems like '/opt/ohpc/admin/lmod/lmod/libexec/lmod python show GCC/6.3.0-2.27' ran fine
 == 2018-03-12 17:12:29,234 modules.py:546 DEBUG Cached result for 'module show GCC/6.3.0-2.27' with key '('MODULEPATH=/home/eb/modules/all', 'lmod', 'GCC/6.3.0-2.27')': os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/eb/modules/all";
 os.environ["MODULEPATH"] = "/home/eb/modules/all";
 os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/eb/modules/all";
 os.environ["MODULEPATH"] = "/home/eb/modules/all";
 os.environ["_ModuleTable001_"] = "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";
 os.environ["_ModuleTable002_"] = "Yi9tb2R1bGVmaWxlcyIsWyJ2ZXJzaW9uIl09Mix9";
 os.environ["_ModuleTable_Sz_"] = "2";
 ----------------------------------------------------------------------------
   /home/eb/modules/all/GCC/6.3.0-2.27.lua:
 ----------------------------------------------------------------------------
 help([[The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada,
 as well as libraries for these languages (libstdc++, libgcj,...). - Homepage: http://gcc.gnu.org/]])
 whatis("Description: The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada,
 as well as libraries for these languages (libstdc++, libgcj,...). - Homepage: http://gcc.gnu.org/")
 conflict("GCC")
 load("GCCcore/6.3.0")
 load("binutils/2.27-GCCcore-6.3.0")
 setenv("EBROOTGCC","/home/eb/software/GCCcore/6.3.0")
 setenv("EBVERSIONGCC","6.3.0")
 setenv("EBDEVELGCC","/home/eb/software/GCC/6.3.0-2.27/easybuild/GCC-6.3.0-2.27-easybuild-devel")


 == 2018-03-12 17:12:29,235 toolchain.py:580 DEBUG Loading toolchain module and dependencies...
 == 2018-03-12 17:12:29,235 toolchain.py:495 DEBUG Loading module for toolchain: GCC/6.3.0-2.27
 == 2018-03-12 17:12:29,235 modules.py:641 DEBUG Current MODULEPATH: /home/eb/modules/all
 == 2018-03-12 17:12:29,235 modules.py:648 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command
 == 2018-03-12 17:12:29,235 modules.py:648 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
 == 2018-03-12 17:12:29,235 modules.py:652 DEBUG Running module command '/opt/ohpc/admin/lmod/lmod/libexec/lmod python --terse list' from /dev/shm/eb-build/OpenMPI/2.0.2/GCC-6.3.0-2.27/openmpi-2.0.2
 == 2018-03-12 17:12:29,264 modules.py:658 DEBUG Output of module command '/opt/ohpc/admin/lmod/lmod/libexec/lmod python --terse list': stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/eb/modules/all";
 os.environ["MODULEPATH"] = "/home/eb/modules/all";
 os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/eb/modules/all";
 os.environ["MODULEPATH"] = "/home/eb/modules/all";
 os.environ["_ModuleTable001_"] = "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";
 os.environ["_ModuleTable002_"] = "Yi9tb2R1bGVmaWxlcyIsWyJ2ZXJzaW9uIl09Mix9";
 os.environ["_ModuleTable_Sz_"] = "2";
 ; stderr: EasyBuild/3.5.0

 == 2018-03-12 17:12:29,264 modules.py:1109 DEBUG Output found in stdout, seems like '/opt/ohpc/admin/lmod/lmod/libexec/lmod python --terse list' ran fine
 == 2018-03-12 17:12:29,264 modules.py:695 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to []
 == 2018-03-12 17:12:29,264 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
 == 2018-03-12 17:12:29,264 modules.py:695 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
 == 2018-03-12 17:12:29,264 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
 == 2018-03-12 17:12:29,265 modules.py:641 DEBUG Current MODULEPATH: /home/eb/modules/all
 == 2018-03-12 17:12:29,265 modules.py:648 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command
 == 2018-03-12 17:12:29,265 modules.py:648 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
 == 2018-03-12 17:12:29,265 modules.py:652 DEBUG Running module command '/opt/ohpc/admin/lmod/lmod/libexec/lmod python load GCC/6.3.0-2.27' from /dev/shm/eb-build/OpenMPI/2.0.2/GCC-6.3.0-2.27/openmpi-2.0.2
 == 2018-03-12 17:12:29,357 modules.py:658 DEBUG Output of module command '/opt/ohpc/admin/lmod/lmod/libexec/lmod python load GCC/6.3.0-2.27': stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/eb/modules/all";
 os.environ["MODULEPATH"] = "/home/eb/modules/all";
 os.environ["CPATH"] = "/home/eb/software/binutils/2.27-GCCcore-6.3.0/include:/home/eb/software/GCCcore/6.3.0/include";
 os.environ["EBDEVELBINUTILS"] = "/home/eb/software/binutils/2.27-GCCcore-6.3.0/easybuild/binutils-2.27-GCCcore-6.3.0-easybuild-devel";
 os.environ["EBDEVELGCC"] = "/home/eb/software/GCC/6.3.0-2.27/easybuild/GCC-6.3.0-2.27-easybuild-devel";
 os.environ["EBDEVELGCCCORE"] = "/home/eb/software/GCCcore/6.3.0/easybuild/GCCcore-6.3.0-easybuild-devel";
 os.environ["EBROOTBINUTILS"] = "/home/eb/software/binutils/2.27-GCCcore-6.3.0";
 os.environ["EBROOTGCC"] = "/home/eb/software/GCCcore/6.3.0";
 os.environ["EBROOTGCCCORE"] = "/home/eb/software/GCCcore/6.3.0";
 os.environ["EBVERSIONBINUTILS"] = "2.27";
 os.environ["EBVERSIONGCC"] = "6.3.0";
 os.environ["EBVERSIONGCCCORE"] = "6.3.0";
 os.environ["LD_LIBRARY_PATH"] = "/home/eb/software/binutils/2.27-GCCcore-6.3.0/lib:/home/eb/software/GCCcore/6.3.0/lib/gcc/x86_64-pc-linux-gnu/6.3.0:/home/eb/software/GCCcore/6.3.0/lib64:/home/eb/software/GCCcore/6.3.0/lib";
 os.environ["LIBRARY_PATH"] = "/home/eb/software/binutils/2.27-GCCcore-6.3.0/lib:/home/eb/software/GCCcore/6.3.0/lib64:/home/eb/software/GCCcore/6.3.0/lib";
 os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/eb/modules/all";
 os.environ["LOADEDMODULES"] = "EasyBuild/3.5.0:GCCcore/6.3.0:binutils/2.27-GCCcore-6.3.0:GCC/6.3.0-2.27";
 os.environ["MANPATH"] = "/home/eb/software/binutils/2.27-GCCcore-6.3.0/share/man:/home/eb/software/GCCcore/6.3.0/share/man:/usr/local/share/man:/usr/share/man/overrides:/usr/share/man";
 os.environ["MODULEPATH"] = "/home/eb/modules/all";
 os.environ["PATH"] = "/home/eb/software/binutils/2.27-GCCcore-6.3.0/bin:/home/eb/software/GCCcore/6.3.0/bin:/home/eb/software/EasyBuild/3.5.0/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/home/hilboll/.local/bin:/home/hilboll/bin";
 os.environ["_LMFILES_"] = "/home/eb/modules/all/EasyBuild/3.5.0.lua:/home/eb/modules/all/GCCcore/6.3.0.lua:/home/eb/modules/all/binutils/2.27-GCCcore-6.3.0.lua:/home/eb/modules/all/GCC/6.3.0-2.27.lua";
 os.environ["_ModuleTable001_"] = "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";
 os.environ["_ModuleTable002_"] = "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";
 os.environ["_ModuleTable003_"] = "My4wIixbImxvYWRPcmRlciJdPTMscHJvcFQ9e30sWyJzaG9ydCJdPSJiaW51dGlscyIsWyJzdGF0dXMiXT0iYWN0aXZlIix9LH0sbXBhdGhBPXsiL2hvbWUvZWIvbW9kdWxlcy9hbGwiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL29wdC9vaHBjL3B1Yi9tb2R1bGVmaWxlcyIsWyJ2ZXJzaW9uIl09Mix9";
 os.environ["_ModuleTable_Sz_"] = "3";
 ; stderr: 
 == 2018-03-12 17:12:29,357 modules.py:1109 DEBUG Output found in stdout, seems like '/opt/ohpc/admin/lmod/lmod/libexec/lmod python load GCC/6.3.0-2.27' ran fine
 == 2018-03-12 17:12:29,357 modules.py:695 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/home/eb/software/binutils/2.27-GCCcore-6.3.0/lib', '/home/eb/software/GCCcore/6.3.0/lib/gcc/x86_64-pc-linux-gnu/6.3.0', '/home/eb/software/GCCcore/6.3.0/lib64', '/home/eb/software/GCCcore/6.3.0/lib'] to ['/home/eb/software/binutils/2.27-GCCcore-6.3.0/lib', '/home/eb/software/GCCcore/6.3.0/lib/gcc/x86_64-pc-linux-gnu/6.3.0', '/home/eb/software/GCCcore/6.3.0/lib64', '/home/eb/software/GCCcore/6.3.0/lib']
 == 2018-03-12 17:12:29,358 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /home/eb/software/binutils/2.27-GCCcore-6.3.0/lib:/home/eb/software/GCCcore/6.3.0/lib/gcc/x86_64-pc-linux-gnu/6.3.0:/home/eb/software/GCCcore/6.3.0/lib64:/home/eb/software/GCCcore/6.3.0/lib (previous value: '/home/eb/software/binutils/2.27-GCCcore-6.3.0/lib:/home/eb/software/GCCcore/6.3.0/lib/gcc/x86_64-pc-linux-gnu/6.3.0:/home/eb/software/GCCcore/6.3.0/lib64:/home/eb/software/GCCcore/6.3.0/lib')
 == 2018-03-12 17:12:29,358 modules.py:695 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
 == 2018-03-12 17:12:29,358 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
 == 2018-03-12 17:12:29,358 toolchain.py:525 DEBUG Loading modules for dependencies: ['hwloc/1.11.5-GCC-6.3.0-2.27']
 == 2018-03-12 17:12:29,358 modules.py:641 DEBUG Current MODULEPATH: /home/eb/modules/all
 == 2018-03-12 17:12:29,358 modules.py:648 DEBUG Changing LD_LIBRARY_PATH from '/home/eb/software/binutils/2.27-GCCcore-6.3.0/lib:/home/eb/software/GCCcore/6.3.0/lib/gcc/x86_64-pc-linux-gnu/6.3.0:/home/eb/software/GCCcore/6.3.0/lib64:/home/eb/software/GCCcore/6.3.0/lib' to '' in environment for module command
 == 2018-03-12 17:12:29,358 modules.py:648 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
 == 2018-03-12 17:12:29,358 modules.py:652 DEBUG Running module command '/opt/ohpc/admin/lmod/lmod/libexec/lmod python --terse list' from /dev/shm/eb-build/OpenMPI/2.0.2/GCC-6.3.0-2.27/openmpi-2.0.2
 == 2018-03-12 17:12:29,392 modules.py:658 DEBUG Output of module command '/opt/ohpc/admin/lmod/lmod/libexec/lmod python --terse list': stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/eb/modules/all";
 os.environ["MODULEPATH"] = "/home/eb/modules/all";
 os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/eb/modules/all";
 os.environ["MODULEPATH"] = "/home/eb/modules/all";
 os.environ["_ModuleTable001_"] = "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";
 os.environ["_ModuleTable002_"] = "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";
 os.environ["_ModuleTable003_"] = "My4wIixbImxvYWRPcmRlciJdPTMscHJvcFQ9e30sWyJzaG9ydCJdPSJiaW51dGlscyIsWyJzdGF0dXMiXT0iYWN0aXZlIix9LH0sbXBhdGhBPXsiL2hvbWUvZWIvbW9kdWxlcy9hbGwiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL29wdC9vaHBjL3B1Yi9tb2R1bGVmaWxlcyIsWyJ2ZXJzaW9uIl09Mix9";
 os.environ["_ModuleTable_Sz_"] = "3";
 ; stderr: EasyBuild/3.5.0
 GCCcore/6.3.0
 binutils/2.27-GCCcore-6.3.0
 GCC/6.3.0-2.27

 == 2018-03-12 17:12:29,392 modules.py:1109 DEBUG Output found in stdout, seems like '/opt/ohpc/admin/lmod/lmod/libexec/lmod python --terse list' ran fine
 == 2018-03-12 17:12:29,393 modules.py:695 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/home/eb/software/binutils/2.27-GCCcore-6.3.0/lib', '/home/eb/software/GCCcore/6.3.0/lib/gcc/x86_64-pc-linux-gnu/6.3.0', '/home/eb/software/GCCcore/6.3.0/lib64', '/home/eb/software/GCCcore/6.3.0/lib'] to ['/home/eb/software/binutils/2.27-GCCcore-6.3.0/lib', '/home/eb/software/GCCcore/6.3.0/lib/gcc/x86_64-pc-linux-gnu/6.3.0', '/home/eb/software/GCCcore/6.3.0/lib64', '/home/eb/software/GCCcore/6.3.0/lib']
 == 2018-03-12 17:12:29,393 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /home/eb/software/binutils/2.27-GCCcore-6.3.0/lib:/home/eb/software/GCCcore/6.3.0/lib/gcc/x86_64-pc-linux-gnu/6.3.0:/home/eb/software/GCCcore/6.3.0/lib64:/home/eb/software/GCCcore/6.3.0/lib (previous value: '/home/eb/software/binutils/2.27-GCCcore-6.3.0/lib:/home/eb/software/GCCcore/6.3.0/lib/gcc/x86_64-pc-linux-gnu/6.3.0:/home/eb/software/GCCcore/6.3.0/lib64:/home/eb/software/GCCcore/6.3.0/lib')
 == 2018-03-12 17:12:29,393 modules.py:695 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
 == 2018-03-12 17:12:29,393 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
 == 2018-03-12 17:12:29,393 modules.py:641 DEBUG Current MODULEPATH: /home/eb/modules/all
 == 2018-03-12 17:12:29,393 modules.py:648 DEBUG Changing LD_LIBRARY_PATH from '/home/eb/software/binutils/2.27-GCCcore-6.3.0/lib:/home/eb/software/GCCcore/6.3.0/lib/gcc/x86_64-pc-linux-gnu/6.3.0:/home/eb/software/GCCcore/6.3.0/lib64:/home/eb/software/GCCcore/6.3.0/lib' to '' in environment for module command
 == 2018-03-12 17:12:29,393 modules.py:648 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
 == 2018-03-12 17:12:29,393 modules.py:652 DEBUG Running module command '/opt/ohpc/admin/lmod/lmod/libexec/lmod python load hwloc/1.11.5-GCC-6.3.0-2.27' from /dev/shm/eb-build/OpenMPI/2.0.2/GCC-6.3.0-2.27/openmpi-2.0.2
 == 2018-03-12 17:12:29,492 modules.py:658 DEBUG Output of module command '/opt/ohpc/admin/lmod/lmod/libexec/lmod python load hwloc/1.11.5-GCC-6.3.0-2.27': stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/eb/modules/all";
 os.environ["MODULEPATH"] = "/home/eb/modules/all";
 os.environ["CPATH"] = "/home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27/include:/home/eb/software/numactl/2.0.11-GCC-6.3.0-2.27/include:/home/eb/software/binutils/2.27-GCCcore-6.3.0/include:/home/eb/software/GCCcore/6.3.0/include";
 os.environ["EBDEVELHWLOC"] = "/home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27/easybuild/hwloc-1.11.5-GCC-6.3.0-2.27-easybuild-devel";
 os.environ["EBDEVELNUMACTL"] = "/home/eb/software/numactl/2.0.11-GCC-6.3.0-2.27/easybuild/numactl-2.0.11-GCC-6.3.0-2.27-easybuild-devel";
 os.environ["EBROOTHWLOC"] = "/home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27";
 os.environ["EBROOTNUMACTL"] = "/home/eb/software/numactl/2.0.11-GCC-6.3.0-2.27";
 os.environ["EBVERSIONHWLOC"] = "1.11.5";
 os.environ["EBVERSIONNUMACTL"] = "2.0.11";
 os.environ["LD_LIBRARY_PATH"] = "/home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27/lib:/home/eb/software/numactl/2.0.11-GCC-6.3.0-2.27/lib";
 os.environ["LIBRARY_PATH"] = "/home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27/lib:/home/eb/software/numactl/2.0.11-GCC-6.3.0-2.27/lib:/home/eb/software/binutils/2.27-GCCcore-6.3.0/lib:/home/eb/software/GCCcore/6.3.0/lib64:/home/eb/software/GCCcore/6.3.0/lib";
 os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/eb/modules/all";
 os.environ["LOADEDMODULES"] = "EasyBuild/3.5.0:GCCcore/6.3.0:binutils/2.27-GCCcore-6.3.0:GCC/6.3.0-2.27:numactl/2.0.11-GCC-6.3.0-2.27:hwloc/1.11.5-GCC-6.3.0-2.27";
 os.environ["MANPATH"] = "/home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27/share/man:/home/eb/software/numactl/2.0.11-GCC-6.3.0-2.27/share/man:/home/eb/software/binutils/2.27-GCCcore-6.3.0/share/man:/home/eb/software/GCCcore/6.3.0/share/man:/usr/local/share/man:/usr/share/man/overrides:/usr/share/man";
 os.environ["MODULEPATH"] = "/home/eb/modules/all";
 os.environ["PATH"] = "/home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27/sbin:/home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27/bin:/home/eb/software/numactl/2.0.11-GCC-6.3.0-2.27/bin:/home/eb/software/binutils/2.27-GCCcore-6.3.0/bin:/home/eb/software/GCCcore/6.3.0/bin:/home/eb/software/EasyBuild/3.5.0/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/home/hilboll/.local/bin:/home/hilboll/bin";
 os.environ["PKG_CONFIG_PATH"] = "/home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27/lib/pkgconfig";
 os.environ["_LMFILES_"] = "/home/eb/modules/all/EasyBuild/3.5.0.lua:/home/eb/modules/all/GCCcore/6.3.0.lua:/home/eb/modules/all/binutils/2.27-GCCcore-6.3.0.lua:/home/eb/modules/all/GCC/6.3.0-2.27.lua:/home/eb/modules/all/numactl/2.0.11-GCC-6.3.0-2.27.lua:/home/eb/modules/all/hwloc/1.11.5-GCC-6.3.0-2.27.lua";
 os.environ["_ModuleTable001_"] = "X01vZHVsZVRhYmxlXz17WyJhY3RpdmVTaXplIl09NixiYXNlTXBhdGhBPXsiL2hvbWUvZWIvbW9kdWxlcy9hbGwiLH0sWyJjX3JlYnVpbGRUaW1lIl09ZmFsc2UsWyJjX3Nob3J0VGltZSJdPWZhbHNlLGZhbWlseT17fSxpbmFjdGl2ZT17fSxtVD17RWFzeUJ1aWxkPXtbIkZOIl09Ii9ob21lL2ViL21vZHVsZXMvYWxsL0Vhc3lCdWlsZC8zLjUuMC5sdWEiLFsiZGVmYXVsdCJdPTEsWyJmdWxsTmFtZSJdPSJFYXN5QnVpbGQvMy41LjAiLFsibG9hZE9yZGVyIl09MSxwcm9wVD17fSxbInNob3J0Il09IkVhc3lCdWlsZCIsWyJzdGF0dXMiXT0iYWN0aXZlIix9LEdDQz17WyJGTiJdPSIvaG9tZS9lYi9tb2R1bGVzL2FsbC9HQ0MvNi4zLjAtMi4yNy5sdWEiLFsiZGVmYXVsdCJdPTAs";
 os.environ["_ModuleTable002_"] = "WyJmdWxsTmFtZSJdPSJHQ0MvNi4zLjAtMi4yNyIsWyJsb2FkT3JkZXIiXT00LHByb3BUPXt9LFsic2hvcnQiXT0iR0NDIixbInN0YXR1cyJdPSJhY3RpdmUiLH0sR0NDY29yZT17WyJGTiJdPSIvaG9tZS9lYi9tb2R1bGVzL2FsbC9HQ0Njb3JlLzYuMy4wLmx1YSIsWyJkZWZhdWx0Il09MCxbImZ1bGxOYW1lIl09IkdDQ2NvcmUvNi4zLjAiLFsibG9hZE9yZGVyIl09Mixwcm9wVD17fSxbInNob3J0Il09IkdDQ2NvcmUiLFsic3RhdHVzIl09ImFjdGl2ZSIsfSxiaW51dGlscz17WyJGTiJdPSIvaG9tZS9lYi9tb2R1bGVzL2FsbC9iaW51dGlscy8yLjI3LUdDQ2NvcmUtNi4zLjAubHVhIixbImRlZmF1bHQiXT0wLFsiZnVsbE5hbWUiXT0iYmludXRpbHMvMi4yNy1HQ0Njb3JlLTYu";
 os.environ["_ModuleTable003_"] = "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";
 os.environ["_ModuleTable004_"] = "Ni4zLjAtMi4yNyIsWyJsb2FkT3JkZXIiXT01LHByb3BUPXt9LFsic2hvcnQiXT0ibnVtYWN0bCIsWyJzdGF0dXMiXT0iYWN0aXZlIix9LH0sbXBhdGhBPXsiL2hvbWUvZWIvbW9kdWxlcy9hbGwiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL29wdC9vaHBjL3B1Yi9tb2R1bGVmaWxlcyIsWyJ2ZXJzaW9uIl09Mix9";
 os.environ["_ModuleTable_Sz_"] = "4";
 ; stderr: 
 == 2018-03-12 17:12:29,492 modules.py:1109 DEBUG Output found in stdout, seems like '/opt/ohpc/admin/lmod/lmod/libexec/lmod python load hwloc/1.11.5-GCC-6.3.0-2.27' ran fine
 == 2018-03-12 17:12:29,493 modules.py:695 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27/lib', '/home/eb/software/numactl/2.0.11-GCC-6.3.0-2.27/lib'] to ['/home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27/lib', '/home/eb/software/numactl/2.0.11-GCC-6.3.0-2.27/lib', '/home/eb/software/binutils/2.27-GCCcore-6.3.0/lib', '/home/eb/software/GCCcore/6.3.0/lib/gcc/x86_64-pc-linux-gnu/6.3.0', '/home/eb/software/GCCcore/6.3.0/lib64', '/home/eb/software/GCCcore/6.3.0/lib']
 == 2018-03-12 17:12:29,493 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27/lib:/home/eb/software/numactl/2.0.11-GCC-6.3.0-2.27/lib:/home/eb/software/binutils/2.27-GCCcore-6.3.0/lib:/home/eb/software/GCCcore/6.3.0/lib/gcc/x86_64-pc-linux-gnu/6.3.0:/home/eb/software/GCCcore/6.3.0/lib64:/home/eb/software/GCCcore/6.3.0/lib (previous value: '/home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27/lib:/home/eb/software/numactl/2.0.11-GCC-6.3.0-2.27/lib')
 == 2018-03-12 17:12:29,493 modules.py:695 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
 == 2018-03-12 17:12:29,493 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
 == 2018-03-12 17:12:29,493 modules.py:542 DEBUG Found cached result for 'module show GCC/6.3.0-2.27' with key '('MODULEPATH=/home/eb/modules/all', 'lmod', 'GCC/6.3.0-2.27')': os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/eb/modules/all";
 os.environ["MODULEPATH"] = "/home/eb/modules/all";
 os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/eb/modules/all";
 os.environ["MODULEPATH"] = "/home/eb/modules/all";
 os.environ["_ModuleTable001_"] = "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";
 os.environ["_ModuleTable002_"] = "Yi9tb2R1bGVmaWxlcyIsWyJ2ZXJzaW9uIl09Mix9";
 os.environ["_ModuleTable_Sz_"] = "2";
 ----------------------------------------------------------------------------
   /home/eb/modules/all/GCC/6.3.0-2.27.lua:
 ----------------------------------------------------------------------------
 help([[The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada,
 as well as libraries for these languages (libstdc++, libgcj,...). - Homepage: http://gcc.gnu.org/]])
 whatis("Description: The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada,
 as well as libraries for these languages (libstdc++, libgcj,...). - Homepage: http://gcc.gnu.org/")
 conflict("GCC")
 load("GCCcore/6.3.0")
 load("binutils/2.27-GCCcore-6.3.0")
 setenv("EBROOTGCC","/home/eb/software/GCCcore/6.3.0")
 setenv("EBVERSIONGCC","6.3.0")
 setenv("EBDEVELGCC","/home/eb/software/GCC/6.3.0-2.27/easybuild/GCC-6.3.0-2.27-easybuild-devel")


 == 2018-03-12 17:12:29,493 modules.py:542 DEBUG Found cached result for 'module show GCC/6.3.0-2.27' with key '('MODULEPATH=/home/eb/modules/all', 'lmod', 'GCC/6.3.0-2.27')': os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/eb/modules/all";
 os.environ["MODULEPATH"] = "/home/eb/modules/all";
 os.environ["LMOD_DEFAULT_MODULEPATH"] = "/home/eb/modules/all";
 os.environ["MODULEPATH"] = "/home/eb/modules/all";
 os.environ["_ModuleTable001_"] = "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";
 os.environ["_ModuleTable002_"] = "Yi9tb2R1bGVmaWxlcyIsWyJ2ZXJzaW9uIl09Mix9";
 os.environ["_ModuleTable_Sz_"] = "2";
 ----------------------------------------------------------------------------
   /home/eb/modules/all/GCC/6.3.0-2.27.lua:
 ----------------------------------------------------------------------------
 help([[The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada,
 as well as libraries for these languages (libstdc++, libgcj,...). - Homepage: http://gcc.gnu.org/]])
 whatis("Description: The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada,
 as well as libraries for these languages (libstdc++, libgcj,...). - Homepage: http://gcc.gnu.org/")
 conflict("GCC")
 load("GCCcore/6.3.0")
 load("binutils/2.27-GCCcore-6.3.0")
 setenv("EBROOTGCC","/home/eb/software/GCCcore/6.3.0")
 setenv("EBVERSIONGCC","6.3.0")
 setenv("EBDEVELGCC","/home/eb/software/GCC/6.3.0-2.27/easybuild/GCC-6.3.0-2.27-easybuild-devel")


 == 2018-03-12 17:12:29,494 toolchain.py:600 DEBUG List of toolchain dependencies from toolchain module: ['GCCcore/6.3.0', 'binutils/2.27-GCCcore-6.3.0']
 == 2018-03-12 17:12:29,494 toolchain.py:418 DEBUG Toolchain definition for {'dummy': True, 'versionsuffix': '', 'version': '6.3.0-2.27', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'GCC', 'full_mod_name': 'GCC/6.3.0-2.27', 'hidden': False, 'parsed': True, 'short_mod_name': 'GCC/6.3.0-2.27'}: {'COMPILER': ['GCC']}
 == 2018-03-12 17:12:29,494 toolchain.py:613 DEBUG List of toolchain elements from toolchain definition: set([])
 == 2018-03-12 17:12:29,494 toolchain.py:616 INFO List of toolchain dependency modules and toolchain definition match!
 == 2018-03-12 17:12:29,495 options.py:90 WARNING option: option with name _opt_CC returns None
 == 2018-03-12 17:12:29,495 options.py:90 WARNING option: option with name _opt_CXX returns None
 == 2018-03-12 17:12:29,495 options.py:90 WARNING option: option with name _opt_F77 returns None
 == 2018-03-12 17:12:29,495 options.py:90 WARNING option: option with name _opt_F90 returns None
 == 2018-03-12 17:12:29,496 options.py:90 WARNING option: option with name _opt_FC returns None
 == 2018-03-12 17:12:29,496 compiler.py:321 INFO _set_optimal_architecture: using march=native as optarch for x86_64.
 == 2018-03-12 17:12:29,498 toolchain.py:692 DEBUG prepare: set additional variables onlymod=False
 == 2018-03-12 17:12:29,498 toolchain.py:280 DEBUG get_software_root software root /home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27 for hwloc was found in environment
 == 2018-03-12 17:12:29,498 variables.py:201 WARNING flags_for_subdirs: directory /home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27/lib64 was not found
 == 2018-03-12 17:12:29,499 toolchain.py:897 DEBUG _setenv_variables: setting environment variable CC to gcc
 == 2018-03-12 17:12:29,499 environment.py:97 INFO Environment variable CC set to gcc (previously undefined)
 == 2018-03-12 17:12:29,499 environment.py:97 INFO Environment variable EBVARCC set to gcc (previously undefined)
 == 2018-03-12 17:12:29,499 toolchain.py:897 DEBUG _setenv_variables: setting environment variable CFLAGS to -O2 -march=native
 == 2018-03-12 17:12:29,499 environment.py:97 INFO Environment variable CFLAGS set to -O2 -march=native (previously undefined)
 == 2018-03-12 17:12:29,499 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -march=native (previously undefined)
 == 2018-03-12 17:12:29,499 toolchain.py:897 DEBUG _setenv_variables: setting environment variable CPPFLAGS to -I/home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27/include
 == 2018-03-12 17:12:29,499 environment.py:97 INFO Environment variable CPPFLAGS set to -I/home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27/include (previously undefined)
 == 2018-03-12 17:12:29,499 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27/include (previously undefined)
 == 2018-03-12 17:12:29,499 toolchain.py:897 DEBUG _setenv_variables: setting environment variable CXX to g++
 == 2018-03-12 17:12:29,500 environment.py:97 INFO Environment variable CXX set to g++ (previously undefined)
 == 2018-03-12 17:12:29,500 environment.py:97 INFO Environment variable EBVARCXX set to g++ (previously undefined)
 == 2018-03-12 17:12:29,500 toolchain.py:897 DEBUG _setenv_variables: setting environment variable CXXFLAGS to -O2 -march=native
 == 2018-03-12 17:12:29,500 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -march=native (previously undefined)
 == 2018-03-12 17:12:29,500 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -march=native (previously undefined)
 == 2018-03-12 17:12:29,500 toolchain.py:897 DEBUG _setenv_variables: setting environment variable F77 to gfortran
 == 2018-03-12 17:12:29,500 environment.py:97 INFO Environment variable F77 set to gfortran (previously undefined)
 == 2018-03-12 17:12:29,500 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previously undefined)
 == 2018-03-12 17:12:29,500 toolchain.py:897 DEBUG _setenv_variables: setting environment variable F90 to gfortran
 == 2018-03-12 17:12:29,500 environment.py:97 INFO Environment variable F90 set to gfortran (previously undefined)
 == 2018-03-12 17:12:29,500 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previously undefined)
 == 2018-03-12 17:12:29,500 toolchain.py:897 DEBUG _setenv_variables: setting environment variable F90FLAGS to -O2 -march=native
 == 2018-03-12 17:12:29,500 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -march=native (previously undefined)
 == 2018-03-12 17:12:29,500 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -march=native (previously undefined)
 == 2018-03-12 17:12:29,501 toolchain.py:897 DEBUG _setenv_variables: setting environment variable FC to gfortran
 == 2018-03-12 17:12:29,501 environment.py:97 INFO Environment variable FC set to gfortran (previously undefined)
 == 2018-03-12 17:12:29,501 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previously undefined)
 == 2018-03-12 17:12:29,501 toolchain.py:897 DEBUG _setenv_variables: setting environment variable FCFLAGS to -O2 -march=native
 == 2018-03-12 17:12:29,501 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -march=native (previously undefined)
 == 2018-03-12 17:12:29,501 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -march=native (previously undefined)
 == 2018-03-12 17:12:29,501 toolchain.py:897 DEBUG _setenv_variables: setting environment variable FFLAGS to -O2 -march=native
 == 2018-03-12 17:12:29,501 environment.py:97 INFO Environment variable FFLAGS set to -O2 -march=native (previously undefined)
 == 2018-03-12 17:12:29,501 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -march=native (previously undefined)
 == 2018-03-12 17:12:29,501 toolchain.py:897 DEBUG _setenv_variables: setting environment variable FLIBS to -lgfortran
 == 2018-03-12 17:12:29,501 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined)
 == 2018-03-12 17:12:29,501 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined)
 == 2018-03-12 17:12:29,501 toolchain.py:897 DEBUG _setenv_variables: setting environment variable LDFLAGS to -L/home/eb/software/GCCcore/6.3.0/lib64 -L/home/eb/software/GCCcore/6.3.0/lib -L/home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27/lib
 == 2018-03-12 17:12:29,502 environment.py:97 INFO Environment variable LDFLAGS set to -L/home/eb/software/GCCcore/6.3.0/lib64 -L/home/eb/software/GCCcore/6.3.0/lib -L/home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27/lib (previously undefined)
 == 2018-03-12 17:12:29,502 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/home/eb/software/GCCcore/6.3.0/lib64 -L/home/eb/software/GCCcore/6.3.0/lib -L/home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27/lib (previously undefined)
 == 2018-03-12 17:12:29,502 toolchain.py:897 DEBUG _setenv_variables: setting environment variable LIBS to -lm -lpthread
 == 2018-03-12 17:12:29,502 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previously undefined)
 == 2018-03-12 17:12:29,502 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined)
 == 2018-03-12 17:12:29,502 toolchain.py:897 DEBUG _setenv_variables: setting environment variable OPTFLAGS to -O2 -march=native
 == 2018-03-12 17:12:29,502 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -march=native (previously undefined)
 == 2018-03-12 17:12:29,502 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -march=native (previously undefined)
 == 2018-03-12 17:12:29,502 toolchain.py:897 DEBUG _setenv_variables: setting environment variable PRECFLAGS to 
 == 2018-03-12 17:12:29,502 environment.py:97 INFO Environment variable PRECFLAGS set to  (previously undefined)
 == 2018-03-12 17:12:29,502 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to  (previously undefined)
 == 2018-03-12 17:12:29,502 easyblock.py:1430 INFO Using /dev/shm/eb-build/OpenMPI/2.0.2/GCC-6.3.0-2.27/openmpi-2.0.2/ as start dir
 == 2018-03-12 17:12:29,502 easyblock.py:1433 DEBUG Changed to real build directory /dev/shm/eb-build/OpenMPI/2.0.2/GCC-6.3.0-2.27/openmpi-2.0.2/ (start_dir)
 == 2018-03-12 17:12:29,503 easyblock.py:2438 DEBUG Not skipping configure step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True
 == 2018-03-12 17:12:29,503 build_log.py:233 INFO configuring...
 == 2018-03-12 17:12:29,503 easyblock.py:2446 INFO Starting configure step
 == 2018-03-12 17:12:29,503 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x25de110>
 == 2018-03-12 17:12:29,503 templates.py:175 DEBUG version found in easyconfig is 2.0.2
 == 2018-03-12 17:12:29,503 templates.py:219 DEBUG name: github_account, config: None
 == 2018-03-12 17:12:29,503 templates.py:219 DEBUG name: name, config: OpenMPI
 == 2018-03-12 17:12:29,503 templates.py:219 DEBUG name: version, config: 2.0.2
 == 2018-03-12 17:12:29,503 templates.py:219 DEBUG name: versionsuffix, config: 
 == 2018-03-12 17:12:29,503 templates.py:219 DEBUG name: versionprefix, config: 
 == 2018-03-12 17:12:29,503 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x25de110>
 == 2018-03-12 17:12:29,503 templates.py:175 DEBUG version found in easyconfig is 2.0.2
 == 2018-03-12 17:12:29,504 templates.py:219 DEBUG name: github_account, config: None
 == 2018-03-12 17:12:29,504 templates.py:219 DEBUG name: name, config: OpenMPI
 == 2018-03-12 17:12:29,504 templates.py:219 DEBUG name: version, config: 2.0.2
 == 2018-03-12 17:12:29,504 templates.py:219 DEBUG name: versionsuffix, config: 
 == 2018-03-12 17:12:29,504 templates.py:219 DEBUG name: versionprefix, config: 
 == 2018-03-12 17:12:29,504 easyblock.py:2452 INFO Running method configure_step part of step configure
 == 2018-03-12 17:12:29,504 run.py:163 DEBUG run_cmd: running cmd  ./configure --prefix=/home/eb/software/OpenMPI/2.0.2-GCC-6.3.0-2.27 --with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-verbs --with-psm2 --enable-mpirun-prefix-by-default --with-hwloc=$EBROOTHWLOC --disable-dlopen --with-slurm --with-pmi=/usr/include/slurm --with-pmi-libdir=/usr (in /dev/shm/eb-build/OpenMPI/2.0.2/GCC-6.3.0-2.27/openmpi-2.0.2)
 == 2018-03-12 17:12:29,504 run.py:183 INFO running cmd:  ./configure --prefix=/home/eb/software/OpenMPI/2.0.2-GCC-6.3.0-2.27 --with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-verbs --with-psm2 --enable-mpirun-prefix-by-default --with-hwloc=$EBROOTHWLOC --disable-dlopen --with-slurm --with-pmi=/usr/include/slurm --with-pmi-libdir=/usr 
 == 2018-03-12 17:12:59,335 build_log.py:158 ERROR EasyBuild crashed with an error (at ?:124 in __init__): cmd " ./configure --prefix=/home/eb/software/OpenMPI/2.0.2-GCC-6.3.0-2.27 --with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-verbs --with-psm2 --enable-mpirun-prefix-by-default --with-hwloc=$EBROOTHWLOC --disable-dlopen --with-slurm --with-pmi=/usr/include/slurm --with-pmi-libdir=/usr" exited with exit code 1 and output:
 configure: WARNING: unrecognized options: --with-threads
 checking for perl... perl

 ============================================================================
 == Configuring Open MPI
 ============================================================================

 *** Startup tests
 checking build system type... x86_64-unknown-linux-gnu
 checking host system type... x86_64-unknown-linux-gnu
 checking target system type... x86_64-unknown-linux-gnu
 checking for gcc... gcc
 checking whether the C compiler works... yes
 checking for C compiler default output file name... a.out
 checking for suffix of executables... 
 checking whether we are cross compiling... no
 checking for suffix of object files... o
 checking whether we are using the GNU C compiler... yes
 checking whether gcc accepts -g... yes
 checking for gcc option to accept ISO C89... none needed
 checking whether gcc understands -c and -o together... yes
 checking how to run the C preprocessor... gcc -E
 checking for grep that handles long lines and -e... /usr/bin/grep
 checking for egrep... /usr/bin/grep -E
 checking for ANSI C header files... yes
 checking for sys/types.h... yes
 checking for sys/stat.h... yes
 checking for stdlib.h... yes
 checking for string.h... yes
 checking for memory.h... yes
 checking for strings.h... yes
 checking for inttypes.h... yes
 checking for stdint.h... yes
 checking for unistd.h... yes
 checking minix/config.h usability... no
 checking minix/config.h presence... no
 checking for minix/config.h... no
 checking whether it is safe to define __EXTENSIONS__... yes
 checking for a BSD-compatible install... /usr/bin/install -c
 checking whether build environment is sane... yes
 checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
 checking for gawk... gawk
 checking whether make sets $(MAKE)... yes
 checking for style of include used by make... GNU
 checking whether make supports nested variables... yes
 checking whether UID '1059' is supported by ustar format... yes
 checking whether GID '1059' is supported by ustar format... yes
 checking how to create a ustar tar archive... gnutar
 checking dependency style of gcc... gcc3
 checking whether make supports nested variables... (cached) yes

 *** Checking versions
 checking for repo version... v2.0.1-348-ge291d0e
 checking Open MPI version... 2.0.2
 checking Open MPI release date... Jan 31, 2017
 checking Open MPI repository version... v2.0.1-348-ge291d0e
 checking for repo version... v2.0.1-348-ge291d0e
 checking Open MPI Run-Time Environment version... 2.0.2
 checking Open MPI Run-Time Environment release date... Jan 31, 2017
 checking Open MPI Run-Time Environment repository version... v2.0.1-348-ge291d0e
 checking for repo version... v2.0.1-348-ge291d0e
 checking Open SHMEM version... 2.0.2
 checking Open SHMEM release date... Jan 31, 2017
 checking Open SHMEM repository version... v2.0.1-348-ge291d0e
 checking for repo version... v2.0.1-348-ge291d0e
 checking Open Portable Access Layer version... 2.0.2
 checking Open Portable Access Layer release date... Jan 31, 2017
 checking Open Portable Access Layer repository version... v2.0.1-348-ge291d0e
 checking for bootstrap Autoconf version... 2.69
 checking for bootstrap Automake version... 1.15
 checking for boostrap Libtool version... 2.4.6

 *** Initialization, setup
 configure: builddir: /dev/shm/eb-build/OpenMPI/2.0.2/GCC-6.3.0-2.27/openmpi-2.0.2
 configure: srcdir: /dev/shm/eb-build/OpenMPI/2.0.2/GCC-6.3.0-2.27/openmpi-2.0.2
 installing to directory "/home/eb/software/OpenMPI/2.0.2-GCC-6.3.0-2.27"

 *** OPAL Configuration options
 checking if want to run code coverage... no
 checking if want to compile with branch probabilities... no
 checking if want to debug memory usage... no
 checking if want to profile memory usage... no
 checking if want developer-level compiler pickyness... no
 checking if want developer-level debugging code... no
 checking if want to developer-level timing framework... no
 checking if want to install project-internal header files... no
 checking if want pretty-print stacktrace... yes
 checking if want pty support... yes
 checking if want weak symbol support... yes
 checking if want dlopen support... no
 checking if want heterogeneous support... no
 checking if word-sized integers must be word-size aligned... no
 checking if want IPv6 support... no
 checking if want package/brand string... Open MPI [email protected] Distribution
 checking if want ident string... 2.0.2
 checking if want to use an alternative checksum algo for messages... no
 checking maximum length of processor name... 256
 checking maximum length of error string... 256
 checking maximum length of object name... 64
 checking maximum length of info key... 36
 checking maximum length of info val... 256
 checking maximum length of port name... 1024
 checking maximum length of datarep string... 128
 checking if want getpwuid support... yes
 checking __NetBSD__... no
 checking __FreeBSD__... no
 checking __OpenBSD__... no
 checking __DragonFly__... no
 checking __386BSD__... no
 checking __bsdi__... no
 checking __APPLE__... no
 checking __linux__... yes
 checking __sun__... no
 checking __sun... no
 checking netdb.h usability... yes
 checking netdb.h presence... yes
 checking for netdb.h... yes
 checking netinet/in.h usability... yes
 checking netinet/in.h presence... yes
 checking for netinet/in.h... yes
 checking netinet/tcp.h usability... yes
 checking netinet/tcp.h presence... yes
 checking for netinet/tcp.h... yes
 checking for struct sockaddr_in... yes
 checking if --with-cuda is set... not set (--with-cuda=)
 checking whether CU_POINTER_ATTRIBUTE_SYNC_MEMOPS is declared... no
 checking whether cuPointerGetAttributes is declared... no
 checking if have cuda support... no

 *** ORTE Configuration options
 checking if want orterun "--prefix" behavior to be enabled by default... yes
 checking if want orte static ports... yes

 *** OMPI Configuration options
 checking if want compile-time warnings inside of mpi.h... yes
 checking if want sparse process groups... no
 checking if want peruse support... no
 checking if want Fortran MPI bindings...  (try)
 checking if want C++ bindings... no
 checking if want MPI::SEEK_SET support... yes
 checking if want run-time MPI parameter checking... runtime
 checking which 'use mpi_f08' implementation to use... regular (no subarray support)

 *** OSHMEM Configuration options
 checking if want oshmem... yes
 checking if want SGI/Quadrics compatibility mode... yes
 checking if want OSHMEM API parameter checking... always
 checking for on_exit... yes
 checking if want pshmem... yes
 checking if want to build OSHMEM fortran bindings... yes
 checking if want wrapper compiler rpath support... yes

 ============================================================================
 == Compiler and preprocessor tests
 ============================================================================

 *** C compiler and preprocessor
 checking for gcc... (cached) gcc
 checking whether we are using the GNU C compiler... (cached) yes
 checking whether gcc accepts -g... (cached) yes
 checking for gcc option to accept ISO C89... (cached) none needed
 checking whether gcc understands -c and -o together... (cached) yes
 checking for gcc option to accept ISO C99... none needed
 checking for the C compiler vendor... gnu
 checking for ANSI C header files... (cached) yes
 checking if gcc supports -finline-functions... yes
 checking if gcc supports -fno-strict-aliasing... yes
 configure: WARNING:  -fno-strict-aliasing has been added to CFLAGS
 checking if gcc supports __builtin_expect... yes
 checking if gcc supports __builtin_prefetch... yes
 checking if gcc supports __builtin_clz... yes
 checking for C optimization flags... -DNDEBUG -O2 -march=native -finline-functions -fno-strict-aliasing
 checking for Interix environment... no
 checking for C ident string support... #ident
 checking for int8_t... yes
 checking for uint8_t... yes
 checking for int16_t... yes
 checking for uint16_t... yes
 checking for int32_t... yes
 checking for uint32_t... yes
 checking for int64_t... yes
 checking for uint64_t... yes
 checking for int128_t... no
 checking for __int128... yes
 checking for uint128_t... no
 checking for long long... yes
 checking for __float128... yes
 checking for long double... yes
 checking complex.h usability... yes
 checking complex.h presence... yes
 checking for complex.h... yes
 checking for float _Complex... yes
 checking for double _Complex... yes
 checking for long double _Complex... yes
 checking for intptr_t... yes
 checking for uintptr_t... yes
 checking for mode_t... yes
 checking for ssize_t... yes
 checking for ptrdiff_t... yes
 checking size of char... 1
 checking size of short... 2
 checking size of int... 4
 checking size of long... 8
 checking size of long long... 8
 checking size of float... 4
 checking size of double... 8
 checking size of long double... 16
 checking size of __float128... 16
 checking size of float _Complex... 8
 checking size of double _Complex... 16
 checking size of long double _Complex... 32
 checking size of void *... 8
 checking size of size_t... 8
 checking size of ssize_t... 8
 checking size of ptrdiff_t... 8
 checking size of wchar_t... 4
 checking size of pid_t... 4
 checking alignment of _Bool... 1
 checking alignment of int8_t... 1
 checking alignment of int16_t... 2
 checking alignment of int32_t... 4
 checking alignment of int64_t... 8
 checking alignment of char... 1
 checking alignment of short... 2
 checking alignment of wchar_t... 4
 checking alignment of int... 4
 checking alignment of long... 8
 checking alignment of long long... 8
 checking alignment of float... 4
 checking alignment of double... 8
 checking alignment of long double... 16
 checking alignment of __float128... 16
 checking alignment of float _Complex... 4
 checking alignment of double _Complex... 8
 checking alignment of long double _Complex... 16
 checking alignment of void *... 8
 checking alignment of size_t... 8
 checking for C bool type... no
 checking size of _Bool... 1
 checking for weak symbol support... yes
 checking for macro weak symbol support... yes
 checking for functional offsetof macro... yes

 *** C++ compiler and preprocessor
 checking whether we are using the GNU C++ compiler... yes
 checking whether g++ accepts -g... yes
 checking dependency style of g++... gcc3
 checking how to run the C++ preprocessor... g++ -E
 checking for the C++ compiler vendor... gnu
 checking if g++ supports -finline-functions... yes
 configure: WARNING:  -finline-functions has been added to CXXFLAGS
 checking if C and C++ are link compatible... yes
 checking for C++ optimization flags... -DNDEBUG -O2 -march=native -finline-functions
 checking size of bool... 1
 checking alignment of bool... 1

 *** C++ compiler and preprocessor
 checking whether we are using the GNU C++ compiler... (cached) yes
 checking whether g++ accepts -g... (cached) yes
 checking dependency style of g++... (cached) gcc3
 checking how to run the C++ preprocessor... g++ -E
 checking if C++ compiler works... yes
 checking if g++ supports -finline-functions... yes
 configure: WARNING:  -finline-functions has been added to CXXFLAGS
 checking if C and C++ are link compatible... (cached) yes
 checking for C++ optimization flags... -DNDEBUG -O2 -march=native -finline-functions
 checking size of bool... (cached) 1
 checking alignment of bool... (cached) 1
 checking if able to build the MPI C++ bindings... no
 checking if want C++ exception handling... skipped

 *** Compiler characteristics
 checking for __attribute__... yes
 checking for __attribute__(aligned)... yes
 checking for __attribute__(always_inline)... yes
 checking for __attribute__(cold)... yes
 checking for __attribute__(const)... yes
 checking for __attribute__(deprecated)... yes
 checking for __attribute__(deprecated_argument)... yes
 checking for __attribute__(format)... yes
 checking for __attribute__(format_funcptr)... yes
 checking for __attribute__(hot)... yes
 checking for __attribute__(malloc)... yes
 checking for __attribute__(may_alias)... yes
 checking for __attribute__(no_instrument_function)... yes
 checking for __attribute__(noinline)... yes
 checking for __attribute__(nonnull)... yes
 checking for __attribute__(noreturn)... yes
 checking for __attribute__(noreturn_funcptr)... yes
 checking for __attribute__(packed)... yes
 checking for __attribute__(pure)... yes
 checking for __attribute__(sentinel)... yes
 checking for __attribute__(unused)... yes
 checking for __attribute__(visibility)... yes
 checking for __attribute__(warn_unused_result)... yes
 checking for __attribute__(weak_alias)... yes
 checking for __attribute__(destructor)... yes
 checking for compiler familyid... 1
 checking for compiler familyname... GNU
 checking for compiler version... 393984
 checking for compiler version_str... 6.3.0

 *** Java compiler
 checking OSX locations... not found
 checking Linux locations... not found
 checking Solaris locations... not found
 checking Java support available... no

 *** Java MPI bindings
 checking if want Java bindings... no

 *** OpenSHMEM profiling
 checking if pshmem will be enabled... yes (weak symbols supported)

 *** Assembler
 checking dependency style of gcc... gcc3
 checking for BSD- or MS-compatible name lister (nm)... /home/eb/software/binutils/2.27-GCCcore-6.3.0/bin/nm -B
 checking the name lister (/home/eb/software/binutils/2.27-GCCcore-6.3.0/bin/nm -B) interface... BSD nm
 checking for fgrep... /usr/bin/grep -F
 checking if .proc/endp is needed... no
 checking directive for setting text section... .text
 checking directive for exporting symbols... .globl
 checking for objdump... objdump
 checking if .note.GNU-stack is needed... yes
 checking suffix for labels... :
 checking prefix for global symbol labels... 
 checking prefix for lsym labels... .L
 checking prefix for function in .type... @
 checking if .size is needed... yes
 checking if .align directive takes logarithmic value... no
 checking if processor supports x86_64 16-byte compare-and-exchange... yes
 checking if compiler correctly handles volatile 128bits... yes
 checking if gcc supports GCC inline assembly... yes
 checking if gcc supports DEC inline assembly... no
 checking if gcc supports XLC inline assembly... no
 checking for assembly format... default-.text-.globl-:--.L-@-1-0-1-1-1
 checking for assembly architecture... AMD64
 checking for builtin atomics... BUILTIN_NO
 checking for pre-built assembly file... yes (atomic-amd64-linux.s)
 checking for atomic assembly filename... atomic-amd64-linux.s

 *** Fortran compiler
 checking whether we are using the GNU Fortran compiler... yes
 checking whether gfortran accepts -g... yes
 configure: WARNING: Open MPI now ignores the F77 and FFLAGS environment variables; only the FC and FCFLAGS environment variables are used.
 checking whether ln -s works... yes
 checking if Fortran compiler works... yes
 checking for extra arguments to build a shared library... none needed
 checking for gfortran warnings flags... none
 checking for Fortran flag to compile .f files... none
 checking for Fortran flag to compile .f90 files... none
 checking to see if Fortran compilers need additional linker flags... none
 checking  external symbol convention... single underscore
 checking if C and Fortran are link compatible... yes
 checking to see if Fortran compiler likes the C++ exception flags... skipped (no C++ exceptions flags)
 checking to see if mpifort compiler needs additional linker flags... none
 checking if Fortran compiler supports CHARACTER... yes
 checking size of Fortran CHARACTER... 1
 checking for C type corresponding to CHARACTER... char
 checking alignment of Fortran CHARACTER... 1
 checking for corresponding KIND value of CHARACTER... C_SIGNED_CHAR
 checking KIND value of Fortran C_SIGNED_CHAR... 1
 checking if Fortran compiler supports LOGICAL... yes
 checking size of Fortran LOGICAL... 4
 checking for C type corresponding to LOGICAL... int
 checking alignment of Fortran LOGICAL... 4
 checking for corresponding KIND value of LOGICAL... C_INT
 checking KIND value of Fortran C_INT... 4
 checking if Fortran compiler supports LOGICAL*1... yes
 checking size of Fortran LOGICAL*1... 1
 checking for C type corresponding to LOGICAL*1... char
 checking alignment of Fortran LOGICAL*1... 1
 checking for corresponding KIND value of LOGICAL*1... C_SIGNED_CHAR
 checking KIND value of Fortran C_SIGNED_CHAR... (cached) 1
 checking if Fortran compiler supports LOGICAL*2... yes
 checking size of Fortran LOGICAL*2... 2
 checking for C type corresponding to LOGICAL*2... short
 checking alignment of Fortran LOGICAL*2... 2
 checking for corresponding KIND value of LOGICAL*2... C_SHORT
 checking KIND value of Fortran C_SHORT... 2
 checking if Fortran compiler supports LOGICAL*4... yes
 checking size of Fortran LOGICAL*4... 4
 checking for C type corresponding to LOGICAL*4... int
 checking alignment of Fortran LOGICAL*4... 4
 checking for corresponding KIND value of LOGICAL*4... C_INT
 checking KIND value of Fortran C_INT... (cached) 4
 checking if Fortran compiler supports LOGICAL*8... yes
 checking size of Fortran LOGICAL*8... 8
 checking for C type corresponding to LOGICAL*8... long long
 checking alignment of Fortran LOGICAL*8... 8
 checking for corresponding KIND value of LOGICAL*8... C_LONG_LONG
 checking KIND value of Fortran C_LONG_LONG... 8
 checking if Fortran compiler supports INTEGER... yes
 checking size of Fortran INTEGER... 4
 checking for C type corresponding to INTEGER... int
 checking alignment of Fortran INTEGER... 4
 checking for corresponding KIND value of INTEGER... C_INT
 checking KIND value of Fortran C_INT... (cached) 4
 checking if Fortran compiler supports INTEGER*1... yes
 checking size of Fortran INTEGER*1... 1
 checking for C type corresponding to INTEGER*1... char
 checking alignment of Fortran INTEGER*1... 1
 checking for corresponding KIND value of INTEGER*1... C_SIGNED_CHAR
 checking KIND value of Fortran C_SIGNED_CHAR... (cached) 1
 checking if Fortran compiler supports INTEGER*2... yes
 checking size of Fortran INTEGER*2... 2
 checking for C type corresponding to INTEGER*2... short
 checking alignment of Fortran INTEGER*2... 2
 checking for corresponding KIND value of INTEGER*2... C_SHORT
 checking KIND value of Fortran C_SHORT... (cached) 2
 checking if Fortran compiler supports INTEGER*4... yes
 checking size of Fortran INTEGER*4... 4
 checking for C type corresponding to INTEGER*4... int
 checking alignment of Fortran INTEGER*4... 4
 checking for corresponding KIND value of INTEGER*4... C_INT
 checking KIND value of Fortran C_INT... (cached) 4
 checking if Fortran compiler supports INTEGER*8... yes
 checking size of Fortran INTEGER*8... 8
 checking for C type corresponding to INTEGER*8... long long
 checking alignment of Fortran INTEGER*8... 8
 checking for corresponding KIND value of INTEGER*8... C_LONG_LONG
 checking KIND value of Fortran C_LONG_LONG... (cached) 8
 checking if Fortran compiler supports INTEGER*16... yes
 checking size of Fortran INTEGER*16... 16
 checking for C type corresponding to INTEGER*16... not found
 configure: WARNING: *** Did not find corresponding C type
 checking for corresponding KIND value of INTEGER*16... 0
 checking KIND value of Fortran 0... 0
 configure: WARNING: Compiler INTEGER*16 and  mismatch; MPI datatype unsupported
 checking if Fortran compiler supports REAL... yes
 checking size of Fortran REAL... 4
 checking for C type corresponding to REAL... float
 checking alignment of Fortran REAL... 4
 checking for corresponding KIND value of REAL... C_FLOAT
 checking KIND value of Fortran C_FLOAT... 4
 checking if Fortran compiler supports REAL*2... no
 checking if Fortran compiler supports REAL*4... yes
 checking size of Fortran REAL*4... 4
 checking for C type corresponding to REAL*4... float
 checking alignment of Fortran REAL*4... 4
 checking for corresponding KIND value of REAL*4... C_FLOAT
 checking KIND value of Fortran C_FLOAT... (cached) 4
 checking if Fortran compiler supports REAL*8... yes
 checking size of Fortran REAL*8... 8
 checking for C type corresponding to REAL*8... double
 checking alignment of Fortran REAL*8... 8
 checking for corresponding KIND value of REAL*8... C_DOUBLE
 checking KIND value of Fortran C_DOUBLE... 8
 checking if Fortran compiler supports REAL*16... yes
 checking size of Fortran REAL*16... 16
 checking for C type corresponding to REAL*16... long double
 checking alignment of Fortran REAL*16... 16
 checking for corresponding KIND value of REAL*16... C_LONG_DOUBLE
 checking KIND value of Fortran C_LONG_DOUBLE... 10
 checking for C type matching bit representation of REAL*16... pending
 checking if long double == REAL*16... no
 checking if gnu compiler __float128 == REAL*16... works!
 checking for C type matching bit representation of REAL*16... yes
 checking if Fortran compiler supports DOUBLE PRECISION... yes
 checking size of Fortran DOUBLE PRECISION... 8
 checking for C type corresponding to DOUBLE PRECISION... double
 checking alignment of Fortran DOUBLE PRECISION... 8
 checking for corresponding KIND value of DOUBLE PRECISION... C_DOUBLE
 checking KIND value of Fortran C_DOUBLE... (cached) 8
 checking if Fortran compiler supports COMPLEX... yes
 checking size of Fortran COMPLEX... 8
 checking for C type corresponding to COMPLEX... float _Complex
 checking alignment of Fortran COMPLEX... 4
 checking for corresponding KIND value of COMPLEX... C_FLOAT_COMPLEX
 checking KIND value of Fortran C_FLOAT_COMPLEX... 4
 checking if Fortran compiler supports COMPLEX*4... no
 checking if Fortran compiler supports COMPLEX*8... yes
 checking size of Fortran COMPLEX*8... 8
 checking for C type corresponding to COMPLEX*8... float _Complex
 checking alignment of Fortran COMPLEX*8... 4
 checking for corresponding KIND value of COMPLEX*8... C_FLOAT_COMPLEX
 checking KIND value of Fortran C_FLOAT_COMPLEX... (cached) 4
 checking if Fortran compiler supports COMPLEX*16... yes
 checking size of Fortran COMPLEX*16... 16
 checking for C type corresponding to COMPLEX*16... double _Complex
 checking alignment of Fortran COMPLEX*16... 8
 checking for corresponding KIND value of COMPLEX*16... C_DOUBLE_COMPLEX
 checking KIND value of Fortran C_DOUBLE_COMPLEX... 8
 checking if Fortran compiler supports COMPLEX*32... yes
 checking size of Fortran COMPLEX*32... 32
 checking for C type corresponding to COMPLEX*32... long double _Complex
 checking alignment of Fortran COMPLEX*32... 16
 checking for corresponding KIND value of COMPLEX*32... C_LONG_DOUBLE_COMPLEX
 checking KIND value of Fortran C_LONG_DOUBLE_COMPLEX... 10
 checking if Fortran compiler supports DOUBLE COMPLEX... yes
 checking size of Fortran DOUBLE COMPLEX... 16
 checking for C type corresponding to DOUBLE COMPLEX... double _Complex
 checking alignment of Fortran DOUBLE COMPLEX... 8
 checking for corresponding KIND value of DOUBLE COMPLEX... C_DOUBLE_COMPLEX
 checking KIND value of Fortran C_DOUBLE_COMPLEX... (cached) 8
 checking for max Fortran MPI handle index... 2147483647
 checking Fortran value for .TRUE. logical type... 1
 checking for correct handling of Fortran logical arrays... yes
 checking max supported Fortran array rank... 7
 checking for the value of MPI_STATUS_SIZE... 6 Fortran INTEGERs
 checking KIND value of Fortran C_INT16_T... 2
 checking KIND value of Fortran C_INT32_T... 4
 checking KIND value of Fortran C_INT64_T... 8
 checking if building Fortran mpif.h bindings... yes
 checking if Fortran compiler supports INTERFACE... yes
 checking if Fortran compiler supports ISO_FORTRAN_ENV... yes
 checking if Fortran compiler supports STORAGE_SIZE for relevant types... yes
 checking for Fortran compiler module include flag... -I
 checking Fortran compiler ignore TKR syntax... not cached; checking variants
 checking for Fortran compiler support of TYPE(*), DIMENSION(*)... no
 checking for Fortran compiler support of !GCC$ ATTRIBUTES NO_ARG_CHECK... yes
 checking Fortran compiler ignore TKR syntax... 1:type(*), dimension(*):!GCC$ ATTRIBUTES NO_ARG_CHECK ::
 checking if Fortran compiler supports ISO_C_BINDING... yes
 checking if building Fortran 'use mpi' bindings... yes
 checking if Fortran compiler supports SUBROUTINE BIND(C)... yes
 checking if Fortran compiler supports TYPE, BIND(C)... yes
 checking if Fortran compiler supports TYPE(type), BIND(C, NAME="name")... yes
 checking if Fortran compiler supports PROCEDURE... yes
 checking if Fortran compiler supports USE...ONLY... yes
 checking if Fortran compiler supports optional arguments... yes
 checking if Fortran compiler supports C_FUNLOC/TS 29113... yes
 checking if Fortran compiler supports PRIVATE... yes
 checking if Fortran compiler supports PROTECTED... yes
 checking if Fortran compiler supports ABSTRACT... yes
 checking if Fortran compiler supports ASYNCHRONOUS... yes
 checking size of Fortran type(test_mpi_handle)... 4
 checking alignment of Fortran type(test_mpi_handle)...     4
 checking Fortran compiler F08 assumed rank syntax... not cached; checking
 checking for Fortran compiler support of TYPE(*), DIMENSION(..)... yes
 checking Fortran compiler F08 assumed rank syntax... yes
 checking which mpi_f08 implementation to build... "good" compiler, no array subsections
 checking if building Fortran 'use mpi_f08' bindings... yes

 ============================================================================
 == Header file tests
 ============================================================================
 checking alloca.h usability... yes
 checking alloca.h presence... yes
 checking for alloca.h... yes
 checking aio.h usability... yes
 checking aio.h presence... yes
 checking for aio.h... yes
 checking arpa/inet.h usability... yes
 checking arpa/inet.h presence... yes
 checking for arpa/inet.h... yes
 checking dirent.h usability... yes
 checking dirent.h presence... yes
 checking for dirent.h... yes
 checking dlfcn.h usability... yes
 checking dlfcn.h presence... yes
 checking for dlfcn.h... yes
 checking execinfo.h usability... yes
 checking execinfo.h presence... yes
 checking for execinfo.h... yes
 checking err.h usability... yes
 checking err.h presence... yes
 checking for err.h... yes
 checking fcntl.h usability... yes
 checking fcntl.h presence... yes
 checking for fcntl.h... yes
 checking grp.h usability... yes
 checking grp.h presence... yes
 checking for grp.h... yes
 checking libgen.h usability... yes
 checking libgen.h presence... yes
 checking for libgen.h... yes
 checking libutil.h usability... no
 checking libutil.h presence... no
 checking for libutil.h... no
 checking for memory.h... (cached) yes
 checking for netdb.h... (cached) yes
 checking for netinet/in.h... (cached) yes
 checking for netinet/tcp.h... (cached) yes
 checking poll.h usability... yes
 checking poll.h presence... yes
 checking for poll.h... yes
 checking pthread.h usability... yes
 checking pthread.h presence... yes
 checking for pthread.h... yes
 checking pty.h usability... yes
 checking pty.h presence... yes
 checking for pty.h... yes
 checking pwd.h usability... yes
 checking pwd.h presence... yes
 checking for pwd.h... yes
 checking sched.h usability... yes
 checking sched.h presence... yes
 checking for sched.h... yes
 checking for strings.h... (cached) yes
 checking stropts.h usability... no
 checking stropts.h presence... no
 checking for stropts.h... no
 checking sys/fcntl.h usability... yes
 checking sys/fcntl.h presence... yes
 checking for sys/fcntl.h... yes
 checking sys/ipc.h usability... yes
 checking sys/ipc.h presence... yes
 checking for sys/ipc.h... yes
 checking sys/shm.h usability... yes
 checking sys/shm.h presence... yes
 checking for sys/shm.h... yes
 checking sys/ioctl.h usability... yes
 checking sys/ioctl.h presence... yes
 checking for sys/ioctl.h... yes
 checking sys/mman.h usability... yes
 checking sys/mman.h presence... yes
 checking for sys/mman.h... yes
 checking sys/param.h usability... yes
 checking sys/param.h presence... yes
 checking for sys/param.h... yes
 checking sys/queue.h usability... yes
 checking sys/queue.h presence... yes
 checking for sys/queue.h... yes
 checking sys/resource.h usability... yes
 checking sys/resource.h presence... yes
 checking for sys/resource.h... yes
 checking sys/select.h usability... yes
 checking sys/select.h presence... yes
 checking for sys/select.h... yes
 checking sys/socket.h usability... yes
 checking sys/socket.h presence... yes
 checking for sys/socket.h... yes
 checking sys/sockio.h usability... no
 checking sys/sockio.h presence... no
 checking for sys/sockio.h... no
 checking for sys/stat.h... (cached) yes
 checking sys/statfs.h usability... yes
 checking sys/statfs.h presence... yes
 checking for sys/statfs.h... yes
 checking sys/statvfs.h usability... yes
 checking sys/statvfs.h presence... yes
 checking for sys/statvfs.h... yes
 checking sys/time.h usability... yes
 checking sys/time.h presence... yes
 checking for sys/time.h... yes
 checking sys/tree.h usability... no
 checking sys/tree.h presence... no
 checking for sys/tree.h... no
 checking for sys/types.h... (cached) yes
 checking sys/uio.h usability... yes
 checking sys/uio.h presence... yes
 checking for sys/uio.h... yes
 checking sys/un.h usability... yes
 checking sys/un.h presence... yes
 checking for sys/un.h... yes
 checking net/uio.h usability... no
 checking net/uio.h presence... no
 checking for net/uio.h... no
 checking sys/utsname.h usability... yes
 checking sys/utsname.h presence... yes
 checking for sys/utsname.h... yes
 checking sys/vfs.h usability... yes
 checking sys/vfs.h presence... yes
 checking for sys/vfs.h... yes
 checking sys/wait.h usability... yes
 checking sys/wait.h presence... yes
 checking for sys/wait.h... yes
 checking syslog.h usability... yes
 checking syslog.h presence... yes
 checking for syslog.h... yes
 checking termios.h usability... yes
 checking termios.h presence... yes
 checking for termios.h... yes
 checking ulimit.h usability... yes
 checking ulimit.h presence... yes
 checking for ulimit.h... yes
 checking for unistd.h... (cached) yes
 checking util.h usability... no
 checking util.h presence... no
 checking for util.h... no
 checking utmp.h usability... yes
 checking utmp.h presence... yes
 checking for utmp.h... yes
 checking malloc.h usability... yes
 checking malloc.h presence... yes
 checking for malloc.h... yes
 checking ifaddrs.h usability... yes
 checking ifaddrs.h presence... yes
 checking for ifaddrs.h... yes
 checking crt_externs.h usability... no
 checking crt_externs.h presence... no
 checking for crt_externs.h... no
 checking regex.h usability... yes
 checking regex.h presence... yes
 checking for regex.h... yes
 checking mntent.h usability... yes
 checking mntent.h presence... yes
 checking for mntent.h... yes
 checking paths.h usability... yes
 checking paths.h presence... yes
 checking for paths.h... yes
 checking ioLib.h usability... no
 checking ioLib.h presence... no
 checking for ioLib.h... no
 checking sockLib.h usability... no
 checking sockLib.h presence... no
 checking for sockLib.h... no
 checking hostLib.h usability... no
 checking hostLib.h presence... no
 checking for hostLib.h... no
 checking shlwapi.h usability... no
 checking shlwapi.h presence... no
 checking for shlwapi.h... no
 checking sys/synch.h usability... no
 checking sys/synch.h presence... no
 checking for sys/synch.h... no
 checking db.h usability... yes
 checking db.h presence... yes
 checking for db.h... yes
 checking ndbm.h usability... yes
 checking ndbm.h presence... yes
 checking for ndbm.h... yes
 checking for sys/mount.h... yes
 checking for sys/sysctl.h... yes
 checking for net/if.h... yes
 checking stdbool.h usability... yes
 checking stdbool.h presence... yes
 checking for stdbool.h... yes
 checking if <stdbool.h> works... yes

 ============================================================================
 == Type tests
 ============================================================================
 checking for socklen_t... yes
 checking for struct sockaddr_in... (cached) yes
 checking for struct sockaddr_in6... yes
 checking for struct sockaddr_storage... yes
 checking whether AF_UNSPEC is declared... yes
 checking whether PF_UNSPEC is declared... yes
 checking whether AF_INET6 is declared... yes
 checking whether PF_INET6 is declared... yes
 checking if SA_RESTART defined in signal.h... yes
 checking for struct sockaddr.sa_len... no
 checking for struct dirent.d_type... yes
 checking for siginfo_t.si_fd... yes
 checking for siginfo_t.si_band... yes
 checking for struct statfs.f_type... yes
 checking for struct statfs.f_fstypename... no
 checking for struct statvfs.f_basetype... no
 checking for struct statvfs.f_fstypename... no
 checking for pointer diff type... ptrdiff_t (size: 8)
 checking for type of MPI_Aint... ptrdiff_t (size: 8)
 checking for type of MPI_Count... long long (size: 8)
 checking for type of MPI_Offset... long long (size: 8)
 checking for an MPI datatype for MPI_Offset... MPI_LONG_LONG
 checking for MPI_INTEGER_KIND... 4
 checking for MPI_ADDRESS_KIND... 8
 checking for MPI_COUNT_KIND... 8
 checking for MPI_OFFSET_KIND... 8
 checking the linker for support for the -fini option... yes

 ============================================================================
 == Library and Function tests
 ============================================================================
 checking for library containing openpty... -lutil
 checking for library containing gethostbyname... none required
 checking for library containing socket... none required
 checking for library containing sched_yield... none required
 checking for library containing dirname... none required
 checking for library containing ceil... none required
 checking for library containing clock_gettime... none required
 checking for asprintf... yes
 checking for snprintf... yes
 checking for vasprintf... yes
 checking for vsnprintf... yes
 checking for openpty... yes
 checking for isatty... yes
 checking for getpwuid... yes
 checking for fork... yes
 checking for waitpid... yes
 checking for execve... yes
 checking for pipe... yes
 checking for ptsname... yes
 checking for setsid... yes
 checking for mmap... yes
 checking for tcgetpgrp... yes
 checking for posix_memalign... yes
 checking for strsignal... yes
 checking for sysconf... yes
 checking for syslog... yes
 checking for vsyslog... yes
 checking for regcmp... no
 checking for regexec... yes
 checking for regfree... yes
 checking for _NSGetEnviron... no
 checking for socketpair... yes
 checking for strncpy_s... no
 checking for usleep... yes
 checking for mkfifo... yes
 checking for dbopen... no
 checking for dbm_open... no
 checking for statfs... yes
 checking for statvfs... yes
 checking for setpgid... yes
 checking for setenv... yes
 checking for __malloc_initialize_hook... yes
 checking for htonl define... no
 checking for htonl... yes
 checking whether va_copy is declared... yes
 checking whether __va_copy is declared... yes
 checking whether __func__ is declared... yes

 ============================================================================
 == System-specific tests
 ============================================================================
 checking for _SC_NPROCESSORS_ONLN... yes
 checking whether byte ordering is bigendian... no
 checking for broken qsort... no
 checking if C compiler and POSIX threads work as is... yes
 checking if C++ compiler and POSIX threads work as is... yes
 checking if Fortran compiler and POSIX threads work as is... yes
 checking for pthread_mutexattr_setpshared... yes
 checking for pthread_condattr_setpshared... yes
 checking for PTHREAD_MUTEX_ERRORCHECK_NP... yes
 checking for PTHREAD_MUTEX_ERRORCHECK... yes
 checking for working POSIX threads package... yes
 checking if threads have different pids (pthreads on linux)... no
 checking if want MPI_THREAD_MULTIPLE support... Enabled
 checking whether ln -s works... yes
 checking for grep that handles long lines and -e... (cached) /usr/bin/grep
 checking for egrep... (cached) /usr/bin/grep -E
 checking dependency style of gcc... (cached) gcc3
 checking for flex... flex
 checking lex output file root... lex.yy
 checking lex library... none needed
 checking whether yytext is a pointer... no
 checking for flavor of ps to use... ps -A -o fname,pid,user
 checking if build filesystem is case sensitive... yes
 checking if configuring for case sensitive filesystem... yes
 checking whether RLIMIT_NPROC is declared... yes
 checking whether RLIMIT_MEMLOCK is declared... yes
 checking whether RLIMIT_NOFILE is declared... yes
 checking whether RLIMIT_FSIZE is declared... yes
 checking whether RLIMIT_CORE is declared... yes
 checking whether RLIMIT_STACK is declared... yes
 checking whether RLIMIT_AS is declared... yes

 ============================================================================
 == Modular Component Architecture (MCA) setup
 ============================================================================
 checking for subdir args...  '--prefix=/home/eb/software/OpenMPI/2.0.2-GCC-6.3.0-2.27' '--with-threads=posix' '--enable-shared' '--enable-mpi-thread-multiple' '--with-verbs' '--with-psm2' '--enable-mpirun-prefix-by-default' '--with-hwloc=/home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27' '--disable-dlopen' '--with-slurm' '--with-pmi=/usr/include/slurm' '--with-pmi-libdir=/usr' 'CC=gcc' 'CFLAGS=-O2 -march=native' 'LDFLAGS=-L/home/eb/software/GCCcore/6.3.0/lib64 -L/home/eb/software/GCCcore/6.3.0/lib -L/home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27/lib' 'LIBS=-lm -lpthread' 'CPPFLAGS=-I/home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27/include' 'CXX=g++' 'CXXFLAGS=-O2 -march=native' 'FC=gfortran' 'FCFLAGS=-O2 -march=native' 'PKG_CONFIG_PATH=/home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27/lib/pkgconfig'
 checking --with-verbs value... simple ok (unspecified)
 checking --with-verbs-libdir value... simple ok (unspecified)
 checking for pkg-config... /usr/bin/pkg-config
 checking pkg-config is at least version 0.9.0... yes
 checking for pkg-config... (cached) /usr/bin/pkg-config
 checking pkg-config is at least version 0.9.0... yes
 checking for X... no
 
 ==> Pre-emptively configuring the hwloc framework to satisfy dependencies.
 checking whether to enable hwloc PCI device support... yes (default)

 +++ Configuring MCA framework hwloc
 checking for no configure components in framework hwloc... 
 checking for m4 configure components in framework hwloc... hwloc1112, external

 --- MCA component hwloc:hwloc1112 (m4 configuration macro, priority 90)
 checking for MCA component hwloc:hwloc1112 compile mode... static
 checking hwloc building mode... embedded
 configure: hwloc builddir: /dev/shm/eb-build/OpenMPI/2.0.2/GCC-6.3.0-2.27/openmpi-2.0.2/opal/mca/hwloc/hwloc1112/hwloc
 configure: hwloc srcdir: /dev/shm/eb-build/OpenMPI/2.0.2/GCC-6.3.0-2.27/openmpi-2.0.2/opal/mca/hwloc/hwloc1112/hwloc
 checking for hwloc version... 1.11.2
 checking if want hwloc maintainer support... disabled (embedded mode)
 checking for hwloc directory prefix... opal/mca/hwloc/hwloc1112/hwloc/
 checking for hwloc symbol prefix... hwloc_
 checking size of void *... (cached) 8
 checking which OS support to include... Linux
 checking which CPU support to include... x86_64
 checking size of unsigned long... 8
 checking size of unsigned int... 4
 checking for the C compiler vendor... gnu
 checking for __attribute__... yes
 checking for __attribute__(aligned)... yes
 checking for __attribute__(always_inline)... yes
 checking for __attribute__(cold)... yes
 checking for __attribute__(const)... yes
 checking for __attribute__(deprecated)... yes
 checking for __attribute__(format)... yes
 checking for __attribute__(hot)... yes
 checking for __attribute__(malloc)... yes
 checking for __attribute__(may_alias)... yes
 checking for __attribute__(no_instrument_function)... yes
 checking for __attribute__(nonnull)... yes
 checking for __attribute__(noreturn)... yes
 checking for __attribute__(packed)... yes
 checking for __attribute__(pure)... yes
 checking for __attribute__(sentinel)... yes
 checking for __attribute__(unused)... yes
 checking for __attribute__(warn_unused_result)... yes
 checking for __attribute__(weak_alias)... yes
 checking if gcc supports -fvisibility=hidden... yes
 checking whether to enable symbol visibility... yes (via -fvisibility=hidden)
 configure: WARNING: "-fvisibility=hidden" has been added to the hwloc CFLAGS
 checking whether the C compiler rejects function calls with too many arguments... yes
 checking whether the C compiler rejects function calls with too few arguments... yes
 checking for unistd.h... (cached) yes
 checking for dirent.h... (cached) yes
 checking for strings.h... (cached) yes
 checking ctype.h usability... yes
 checking ctype.h presence... yes
 checking for ctype.h... yes
 checking for strncasecmp... yes
 checking whether function strncasecmp is declared... yes
 checking for strftime... yes
 checking for setlocale... yes
 checking for stdint.h... (cached) yes
 checking for sys/mman.h... (cached) yes
 checking for KAFFINITY... no
 checking for PROCESSOR_CACHE_TYPE... no
 checking for CACHE_DESCRIPTOR... no
 checking for LOGICAL_PROCESSOR_RELATIONSHIP... no
 checking for RelationProcessorPackage... no
 checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no
 checking for GROUP_AFFINITY... no
 checking for PROCESSOR_RELATIONSHIP... no
 checking for NUMA_NODE_RELATIONSHIP... no
 checking for CACHE_RELATIONSHIP... no
 checking for PROCESSOR_GROUP_INFO... no
 checking for GROUP_RELATIONSHIP... no
 checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no
 checking for PSAPI_WORKING_SET_EX_BLOCK... no
 checking for PSAPI_WORKING_SET_EX_INFORMATION... no
 checking for PROCESSOR_NUMBER... no
 checking for main in -lgdi32... no
 checking windows.h usability... no
 checking windows.h presence... no
 checking for windows.h... no
 checking sys/lgrp_user.h usability... no
 checking sys/lgrp_user.h presence... no
 checking for sys/lgrp_user.h... no
 checking kstat.h usability... no
 checking kstat.h presence... no
 checking for kstat.h... no
 checking whether fabsf is declared... yes
 checking for fabsf in -lm... yes
 checking picl.h usability... no
 checking picl.h presence... no
 checking for picl.h... no
 checking whether _SC_NPROCESSORS_ONLN is declared... yes
 checking whether _SC_NPROCESSORS_CONF is declared... yes
 checking whether _SC_NPROC_ONLN is declared... no
 checking whether _SC_NPROC_CONF is declared... no
 checking whether _SC_PAGESIZE is declared... yes
 checking whether _SC_PAGE_SIZE is declared... yes
 checking whether _SC_LARGE_PAGESIZE is declared... no
 checking mach/mach_host.h usability... no
 checking mach/mach_host.h presence... no
 checking for mach/mach_host.h... no
 checking mach/mach_init.h usability... no
 checking mach/mach_init.h presence... no
 checking for mach/mach_init.h... no
 checking for sys/param.h... (cached) yes
 checking for sys/sysctl.h... (cached) yes
 checking whether CTL_HW is declared... no
 checking whether HW_NCPU is declared... no
 checking whether strtoull is declared... yes
 checking whether getprogname is declared... no
 checking whether getexecname is declared... no
 checking whether GetModuleFileName is declared... no
 checking for program_invocation_name... yes
 checking for __progname... yes
 checking for pthread_t... yes
 checking whether function sched_setaffinity is declared... yes
 checking for old prototype of sched_setaffinity... no
 checking for working CPU_SET... yes
 checking for working CPU_SET_S... yes
 checking for working syscall... yes
 checking for KERRIGHED... no
 checking for lib... no
 checking for bash... /bin/sh
 checking for ffs... yes
 checking whether function ffs is declared... yes
 checking for ffsl... yes
 checking whether function ffsl is declared... yes
 checking for fls... no
 checking for flsl... no
 checking for clz... no
 checking for clzl... no
 checking for openat... yes
 checking for malloc.h... (cached) yes
 checking for getpagesize... yes
 checking for memalign... yes
 checking for posix_memalign... (cached) yes
 checking for sys/utsname.h... (cached) yes
 checking for uname... yes
 checking pthread_np.h usability... no
 checking pthread_np.h presence... no
 checking for pthread_np.h... no
 checking whether pthread_setaffinity_np is declared... yes
 checking whether pthread_getaffinity_np is declared... yes
 checking for sched_setaffinity... yes
 checking for sys/cpuset.h... no
 checking for cpuset_setaffinity... no
 checking for library containing pthread_getthrds_np... no
 checking for cpuset_setid... no
 checking numaif.h usability... yes
 checking numaif.h presence... yes
 checking for numaif.h... yes
 checking for numa_available in -lnuma... yes
 checking for set_mempolicy in -lnuma... yes
 checking for mbind in -lnuma... yes
 checking for migrate_pages in -lnuma... yes
 checking libudev.h usability... no
 checking libudev.h presence... no
 checking for libudev.h... no
 checking for PCIACCESS... yes
 checking pciaccess.h usability... yes
 checking pciaccess.h presence... yes
 checking for pciaccess.h... yes
 checking for pci_slot_match_iterator_create... yes
 checking for final PCIACCESS support... yes
 checking CL/cl_ext.h usability... no
 checking CL/cl_ext.h presence... no
 checking for CL/cl_ext.h... no
 checking cuda.h usability... no
 checking cuda.h presence... no
 checking for cuda.h... no
 checking cuda_runtime_api.h usability... no
 checking cuda_runtime_api.h presence... no
 checking for cuda_runtime_api.h... no
 checking nvml.h usability... no
 checking nvml.h presence... no
 checking for nvml.h... no
 checking X11/Xlib.h usability... no
 checking X11/Xlib.h presence... no
 checking for X11/Xlib.h... no
 configure: WARNING: X11 not found; GL disabled
 checking NVCtrl/NVCtrl.h usability... no
 checking NVCtrl/NVCtrl.h presence... no
 checking for NVCtrl/NVCtrl.h... no
 checking for x86 cpuid... yes
 checking for pthread_mutex_lock... yes
 checking if plugin support is enabled... no
 checking components to build statically...  noos xml synthetic custom xml_nolibxml linux linuxpci pci x86
 checking components to build as plugins... 
 checking whether hwloc configure succeeded... yes
 checking infiniband/verbs.h usability... yes
 checking infiniband/verbs.h presence... yes
 checking for infiniband/verbs.h... yes
 configure: WARNING: using an external hwloc; disqualifying this component
 checking if MCA component hwloc:hwloc1112 can compile... no

 --- MCA component hwloc:external (m4 configuration macro, priority 90)
 checking for MCA component hwloc:external compile mode... static
 checking --with-hwloc-libdir value... simple ok (unspecified)
 checking looking for external hwloc in... (/home/eb/software/hwloc/1.11.5-GCC-6.3.0-2.27)
 checking hwloc.h usability... yes
 checking hwloc.h presence... yes
 checking for hwloc.h... yes
 looking for library in lib
 checking for library containing hwloc_topology_init... -lhwloc
 checking if external hwloc supports XML... yes
 checking for infiniband/verbs.h... (cached) yes
 checking if external hwloc version is 1.8 or greater... yes
 checking if MCA component hwloc:external can compile... yes
 
 checking for winning hwloc component header file... opal/mca/hwloc/external/external.h
 
 <== Pre-emptive hwloc framework configuration complete.
 <== We now return you to your regularly scheduled programming.
 
 checking if user requested PMI support... yes
 checking for pmi.h in /usr/include/slurm/include... not found
 checking for pmi.h in /usr/include/slurm/include/slurm... not found
 checking for libpmi in /usr... not found
 checking for libpmi in /usr/lib64... found
 checking for PMI_Init in -lpmi... yes
 checking for pmi2.h in /usr/include/slurm/include... not found
 checking for pmi2.h in /usr/include/slurm/include/slurm... not found
 checking for libpmi2 in /usr... not found
 checking for libpmi2 in /usr/lib64... found
 checking for PMI2_Init in -lpmi2... yes
 checking can PMI support be built... no
 configure: WARNING: PMI support requested (via --with-pmi) but neither pmi.h
 configure: WARNING: nor pmi2.h were found under locations:
 configure: WARNING:     /usr/include/slurm
 configure: WARNING:     /usr/include/slurm/slurm
 configure: WARNING: Specified path: /usr/include/slurm
 configure: WARNING: OR neither libpmi nor libpmi2 were found under:
 configure: WARNING:     /usr/lib
 configure: WARNING:     /usr/lib64
 configure: WARNING: Specified path: /usr
 configure: error: Aborting
 (at easybuild/tools/run.py:481 in parse_cmd_output)
 == 2018-03-12 17:12:59,336 easyblock.py:2685 WARNING build failed (first 300 chars): cmd " ./configure --prefix=/home/eb/software/OpenMPI/2.0.2-GCC-6.3.0-2.27 --with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-verbs --with-psm2 --enable-mpirun-prefix-by-default --with-hwloc=$EBROOTHWLOC --disable-dlopen --with-slurm --with-pmi=/usr/include/slurm --with-pmi-libd
 == 2018-03-12 17:12:59,336 easyblock.py:279 INFO Closing log for application name OpenMPI version 2.0.2