Created
November 21, 2019 13:53
-
-
Save andreas-wilm/96deb28a0c8a664fcf9f1ae1b0c8e124 to your computer and use it in GitHub Desktop.
bwa index on slurm with singularity
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| #!/bin/bash | |
| #SBATCH --job-name=bwaindex | |
| #SBATCH --output=bwaindex.out | |
| #SBATCH --ntasks=1 | |
| #SBATCH --cpus-per-task=1 | |
| #SBATCH --time=01:00:00 | |
| #SBATCH --mem-per-cpu=20000 | |
| SIF=/shared/containers/dnazoo-uwa-20191106.sif | |
| cd /shared/scratch | |
| srun singularity exec $SIF bwa index draft.fa |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment