Skip to content

Instantly share code, notes, and snippets.

View andreifoldes's full-sized avatar

Tamas Andrei Foldes andreifoldes

View GitHub Profile
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
@andreifoldes
andreifoldes / partial_permutation_testing.md
Created August 25, 2022 11:25 — forked from effigies/partial_permutation_testing.md
Markiewicz and Bohland, 2016 permutation testing

Partially-parametric permutation testing

Cluster thresholding in multi-voxel pattern analysis (MVPA) is an open problem, as many figures of merit are possible, few (if any) of which have been sufficiently analyzed to permit a parametric solution or a guarantee of compatibility with pre-computed simulations. Stelzer, et al. 2012 represents probably the most conservative approach, constructing voxel-wise and then cluster-wise null distributions at the group level, based on permuting the training labels at the individual level.

In Mapping the cortical representation of speech sounds in a syllable repetition task, we adapted this approach to skip the voxel-wise null distribution,

@andreifoldes
andreifoldes / dsu.sh
Last active April 11, 2018 16:23 — forked from ddbs/dsu.sh
Data Science Ubuntu
# Instructions to build a Data Science VM based on Ubuntu Xenial
######################################
# R
######################################
# Update CRAN mirror for R
echo "deb https://cran.rstudio.com/bin/linux/ubuntu xenial/" | sudo tee -a /etc/apt/sources.list
## Secure CRAN mirror and upgrade