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August 29, 2015 14:15
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Create a tclktk progressbar to provide feedback when running a parallel job
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library(foreach) | |
library(iterators) | |
library(doParallel) | |
library(tcltk) | |
# Choose number of iterations | |
n <- 250 | |
# In sequence, without progress bar --------------------------------------- | |
print("Running sequential task") | |
time1 <- system.time({ | |
k <- foreach(i = icount(n), .packages = "tcltk", .combine = c) %do% { | |
Sys.sleep(0.01) | |
log2(i) | |
} | |
}) | |
print(time1) | |
# In sequence, with progress bar ------------------------------------------ | |
print("Running sequential task with progress bar") | |
pb <- tkProgressBar("Sequential task", min=1, max=n) | |
time2 <- system.time({ | |
k <- foreach(i = icount(n), .packages = "tcltk", .combine = c) %do% { | |
if(!exists("pb")) pb <- tkProgressBar("Sequential task", min=1, max=n) | |
setTkProgressBar(pb, i) | |
Sys.sleep(0.01) | |
log2(i) | |
} | |
}) | |
close(pb) | |
rm(pb) | |
print(time2) | |
# Run the loop in parallel ------------------------------------------------ | |
print("Running parallel task with progress bar") | |
cl <- makeCluster(8) | |
registerDoParallel(cl) | |
time3 <- system.time({ | |
clusterExport(cl, c("n")) | |
k <- foreach(i = icount(n), .packages = "tcltk", .combine = c) %dopar% { | |
if(!exists("pb")) pb <- tkProgressBar("Parallel task", min=1, max=n) | |
setTkProgressBar(pb, i) | |
Sys.sleep(0.01) | |
log2(i) | |
} | |
}) | |
#Stop the cluster | |
stopCluster(cl) | |
print(time3) | |
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