Must have packages after every update

update.R

# CRAN
pkgs <- c("devtools",
          "ggplot2",
          "ggforce",
          "tidyverse",
          "R6",
          "stats",
          "stringr",
          "scales",
          "rlang",
          "httr",
          "openxlsx",
          "reshape2",
          "reactable",
          "msigdbr",
          "kableExtra",
          "rmarkdown",
          "igraph",
          "BDgraph",
          "visNetwork",
          "caret",
          "ggdendro",
          "ggpbur",
          "gplots",
          "gridExtra",
          "heatmap.plus",
          "mclust",
          "Rmisc",
          "randomForest",
          "roxygen2",
          "tsne",
          "umap",
          "shiny",
          "shinyjs",
          "shinythemes")

install.packages(pkgs)

# Bioconductor
pkgs <- c("Biobase",
          "biomaRt",
          "limma",
          "DESeq2",
          "edgeR",
          "GSVA",
          "ComplexHeatmap")

install.packages("BiocManager")
BiocManager::install()
BiocManager::install(pkgs)