Example1.php

<?php
// Zend Framework Workaround
require_once('ZFWA\Db\Table\Row\Abstract.php');
require_once('ZFWA\Db\Table\Select\ColumnsWithoutFrom.php');
// That Table we want to start from
require_once('ThatTable.php');
// init Table
$ThatTable = new ThatTable();
// fetch Rowset/Row
$ThatRowset = $ThatTable->find(1);
$ThatRow = $ThatRowset->current();
// select Intersection Columns
$select = $ThatTable->selectIntersectionColumns('status');
// fetch ManyToMany with Intersection Columns
$FarRows = $ThatRow->findManyToManyRowset('ThatToFarTable', 'FarTable', null, null, $select);

ZFWA\Db\Table\Row\Abstract.php

<?php
/**
 * @see Zend_Db_Table_Row_Abstract
 */
require_once 'Zend/Db/Table/Row/Abstract.php';

/**
 * @category   ZFWA
 * @package    ZFWA_Db
 * @subpackage Table
 *
 * @author Christoph Roensch
 */
abstract class ZFWA_Db_Table_Row_Abstract extends Zend_Db_Table_Row_Abstract
{
  /**
   * Select columns of the intersection table used in findManyToManyRowset
   *
   * part of the fix to revert the changes in ZF-3709
   *
   * @param  array|string|Zend_Db_Expr $cols The columns to select.
   */
  public function selectIntersectionColumns($cols = '*')
  {
    if( is_array($cols) )
    {
      foreach( $cols as &$col )
      {
        $col = 'i.'.$col;
      }
    }
    elseif ( is_string($cols) )
    {
      $cols = 'i.'.$cols;
    }
    $table = $this->getTable();
    /**
     * @see ZFWA_Db_Table_Select_ColumnsWithoutFrom
     */
    require_once 'ZFWA/Db/Table/Select/ColumnsWithoutFrom.php';
    $select = new ZFWA_Db_Table_Select_ColumnsWithoutFrom($table);
    return $select->columns($cols);
  }
}

ZFWA\Db\Table\Select\ColumnsWithoutFrom.php

<?php
/**
 * Class for SQL SELECT query manipulation for the Zend_Db_Table_Row component.
 *
 * allows to use columns before specifying a FROM clause
 * part of the fix to revert the changes in ZF-3709
 *
 * @see ZFWA_Db_Table_Row_Abstract::selectIntersectionColumns()
 *
 * @category   ZFWA
 * @package    ZFWA_Db
 * @subpackage Table
 *
 * @author Christoph Roensch
 */
class ZFWA_Db_Table_Select_ColumnsWithoutFrom extends Zend_Db_Table_Select
{
  /**
   * Specifies columns even if they are not used in the FROM clause.
   *
   * The parameter can be a single string or Zend_Db_Expr object,
   * or else an array of strings or Zend_Db_Expr objects.
   *
   * @param  array|string|Zend_Db_Expr $cols The columns to select from this table.
   * @param  string $correlationName Correlation name of target table.  OPTIONAL
   * @return ZFWA_Db_Table_Select This ZFWA_Db_Table_Select object.
   */
  public function columns($cols = '*', $correlationName = null)
  {
    $this->_tableCols($correlationName, $cols);
    return $this;
  }
}