- Abeja - Start-up that does analysis of people's shopping patterns in stores using cameras and stuff, sounds interesting; might not require Japanese
 - Amazon - I THINK they now hire some developers
 - Barclays - Self-explanatory; nice Mori Tower office
 - Cookpad - Insanely popular recipe sharing service; I've heard it's kind of black from multiple Japanese people, but there are definitely good positions for foreigners; sweet Ebisu Garden Place office
 - Crowdworks - Crowdsourcing, kind of like Japanese MechanicalTurk; very profitable
 - CyberAgent (and CyberZ) - Big company; rich as hell; lots of foreigners; considered one of the best mid-sized Japanese tech companies to work for
 - Degica - eCommerce platform; might not require Japanese
 - DeNa - Big company; rich as hell; lots of foreigners; might be kinda black though, depending on the team; nice Hikarie office
 - DMM - Started as a porn company but has branched out
 - Eureka - Makes everyone's favorite Japanese tinder clone, "Pairs"; recently had an IPO
 - Fast Retailing - Parent company for Uniqlo and others; pays fairly well apparently
 - Finc - Mobile health tech; might be English-friendly
 - FreakOut - Highly profitable company doing ad tech etc.
 - Freee - Cloud accounting startup, recently raised $30M
 - Gengo - Translation service, lots of foreigners; wouldn't require Japanese I don't think
 - Github - Recently started hiring developers in Tokyo
 - GMO - Huge company; might have something good somewhere
 - Goldman Sachs - Self-explanatory; nice Mori Tower office
 - Google - Consistently ranked best place in Japan to work; nice Mori Tower office
 - Gree - Lots of foreigners but apparently very black (likely depends on team though); pays pretty well
 - Gunosy - Might require Japanese; Post-IPO and profitable; runs another very popular news app and a large ad network; nice Mori Tower office
 - Heroku - Infrastructure-as-a-service; recently bought by Salesforce
 - IBM
 - iKnow - Runs language-learning service iKnow; recently aquired by DMM
 - Indeed - Self-explanatory
 - JP Morgan
 - Kaizen Platform - Pretty awesome company developing A/B testint as a service / analytics services; I think most people there speak English; has an office in San Francisco
 - Kakaku.com - Runs Kakaku and Tabelog; pays pretty well; might be kinda black
 - Lang-8 - Runs Lang-8 and HiNative; might be English-friendly
 - LINE - English-speaking office in Fukuoka, JLPT N2/Japanese-required office in Tokyo
 - M3 - I think they require Japanese, but it's a very impressive company; they run a social network for doctors
 - MediWeb - Decent place to work supposedly; 100% pair programming
 - Mercari - Incredibly successful "flea market" app; might require Japanese
 - Microsoft - English-friendly with chances to speak Japanese; apparently have some interesting projects; nice Shinagawa office
 - MoneyForward - Makes apps that help you manage your money and stuff I think
 - Moneytree - FinTech located in the FINOLAB startup incubator office that is pretty foreigner friendly.
 - Morgan Stanley - Self-explanatory, might require Japamese (the other major investment banks don't really)
 - Nomura - Might require some Japanese
 - Paidy - FinTech
 - peroli (Mery.jp) - Runs Mery, recently aquired by DeNa
 - Pivotal Labs - Recently started hiring developers in Tokyo; nice Mori Tower office
 - Pixiv - Kind of like the Japanese deviantart
 - Rakuten - Self-explanatory; I hear the research lab is great, the rest of the company is hit-or-miss by team; definitely English-friendly
 - Reaktor
 - Recruit Holdings - This company is massive and can be awesome if you get the right team; there MIGHT be a couple of teams that don't require Japanese ability; look around you on the train, half the ads you see will be for this company's services
 - Retty - Makes a popular restaurant search app
 - Smartnews - Might require Japanese but if not it's a great company; runs one of the top Japanese news apps; actually hard tech interview; free food; nice Shibuya office
 - Spee - Adtech etc; fairly successful apparently
 - Treasure Data - Awesome company developing data analytics/logging products (fluentd etc); some of them probably speak English; has an office in San Francisco
 - Tsuru Capital - "casual atmosphere"
 - VoyageGroup - Runs a bunch of different services; pretty decent place to work from what I've heard
 - Voyagin - Small start-up that runs a travel recommendation service; around half foreigners; recently bought by Rakuten so less risky than some other start-ups
 - Wantedly - Progressive job-search service with female ex-facebook CEO; might be English-friendly
 - Yahoo - Self-explanatory
 
- Hacker News Tokyo or Osaka
 - Mobile Monday
 - Node Festival
 - PHPcon
 - Ride the Lightning
 - RubyKaigi
 - Scala Matsuri
 - Startup Weekend
 - Tech Talk Tokyo
 - Tokyo iOS Meetup
 - Tokyo Linux Users Group
 - Tokyo Rubist Meetup
 - UX Talk Tokyo
 
I won't link to specific recruiters because there are a million, they're easy to find, and everyone likes different ones. Companies that allow remote work in Japan.
- Forkwell - Japanese job search site; tons of jobs with min. salary of 5-6 million or more; filter by programming language
 - Hacker News job threads - Lots of remote job opportunities
 - Heikin Nenshuu - check salary stats for companies (any public company should be listed); e.g. Cookpad, M3, Cyberagent, Recruit
 - Indeed
 - JobTalk
 - Justa - Like Indeed but more job listings in English
 - Vorkers - Japanese Glassdoor basically; to get full access you need to either write a review (which is a huge pain in the ass), or pay for a premium membership; can still get overall rating without signing up though
 - Wantedly - Lots of start-up jobs and some from bigger companies; literally just click a button and interested companies will respond
 - WeWorkRemotely - more remote jobs
 
There's also a similar doc in a tabular format maintained at @btamada/jpswcomps.