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August 17, 2022 12:36
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ExomeDepth 1.1.15 fails to build
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@nix { "action": "setPhase", "phase": "unpackPhase" } | |
unpacking sources | |
unpacking source archive /nix/store/5qml11z03vjrk9hgvm0y3amwfgc5dzy3-ExomeDepth_1.1.15.tar.gz | |
source root is ExomeDepth | |
setting SOURCE_DATE_EPOCH to timestamp 1578531002 of file ExomeDepth/MD5 | |
@nix { "action": "setPhase", "phase": "patchPhase" } | |
patching sources | |
@nix { "action": "setPhase", "phase": "configurePhase" } | |
configuring | |
@nix { "action": "setPhase", "phase": "buildPhase" } | |
building | |
@nix { "action": "setPhase", "phase": "checkPhase" } | |
running tests | |
@nix { "action": "setPhase", "phase": "installPhase" } | |
installing | |
Warning message: | |
In normalizePath("~") : | |
path[1]="/homeless-shelter": No such file or directory | |
Warning message: | |
In normalizePath("~") : | |
path[1]="/homeless-shelter": No such file or directory | |
* installing *source* package 'ExomeDepth' ... | |
** package 'ExomeDepth' successfully unpacked and MD5 sums checked | |
** using staged installation | |
** libs | |
/nix/store/3d9zjv5vaqjxb9kwbdqsd194alwm97x1-gcc-wrapper-11.3.0/bin/c++ -std=gnu++14 -I"/nix/store/93xclgc1izafj1dxcn8m2m76nsrwqhcw-R-4.2.1/lib/R/include" -DNDEBUG -fpic -g -O2 -c CNV_estimate.cpp -o CN> | |
/nix/store/3d9zjv5vaqjxb9kwbdqsd194alwm97x1-gcc-wrapper-11.3.0/bin/cc -I"/nix/store/93xclgc1izafj1dxcn8m2m76nsrwqhcw-R-4.2.1/lib/R/include" -DNDEBUG -fpic -g -O2 -c ExomeDepth_init.c -o ExomeDepth_init> | |
/nix/store/3d9zjv5vaqjxb9kwbdqsd194alwm97x1-gcc-wrapper-11.3.0/bin/cc -I"/nix/store/93xclgc1izafj1dxcn8m2m76nsrwqhcw-R-4.2.1/lib/R/include" -DNDEBUG -fpic -g -O2 -c VP_gamma.c -o VP_gamma.o | |
In file included from gsl_math.h:22, | |
from VP_gamma.c:23: | |
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:85:1: error: expected ';' before 'extern' | |
85 | __MATHCALL_VEC (acosh,, (_Mdouble_ __x)); | |
| ^~~~~~~~~~~~~~ | |
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:87:1: error: expected ';' before 'extern' | |
87 | __MATHCALL_VEC (asinh,, (_Mdouble_ __x)); | |
| ^~~~~~~~~~~~~~ | |
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:89:1: error: expected ';' before 'extern' | |
89 | __MATHCALL_VEC (atanh,, (_Mdouble_ __x)); | |
| ^~~~~~~~~~~~~~ | |
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:119:1: error: expected ';' before 'extern' | |
119 | __MATHCALL_VEC (expm1,, (_Mdouble_ __x)); | |
| ^~~~~~~~~~~~~~ | |
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:122:1: error: expected ';' before 'extern' | |
122 | __MATHCALL_VEC (log1p,, (_Mdouble_ __x)); | |
| ^~~~~~~~~~~~~~ | |
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:147:1: error: expected ';' before 'extern' | |
147 | __MATHCALL_VEC (hypot,, (_Mdouble_ __x, _Mdouble_ __y)); | |
| ^~~~~~~~~~~~~~ | |
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:85:1: error: expected ';' before 'extern' | |
85 | __MATHCALL_VEC (acosh,, (_Mdouble_ __x)); | |
| ^~~~~~~~~~~~~~ | |
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:87:1: error: expected ';' before 'extern' | |
87 | __MATHCALL_VEC (asinh,, (_Mdouble_ __x)); | |
| ^~~~~~~~~~~~~~ | |
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:89:1: error: expected ';' before 'extern' | |
89 | __MATHCALL_VEC (atanh,, (_Mdouble_ __x)); | |
| ^~~~~~~~~~~~~~ | |
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:119:1: error: expected ';' before 'extern' | |
119 | __MATHCALL_VEC (expm1,, (_Mdouble_ __x)); | |
| ^~~~~~~~~~~~~~ | |
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:122:1: error: expected ';' before 'extern' | |
122 | __MATHCALL_VEC (log1p,, (_Mdouble_ __x)); | |
| ^~~~~~~~~~~~~~ | |
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:147:1: error: expected ';' before 'extern' | |
147 | __MATHCALL_VEC (hypot,, (_Mdouble_ __x, _Mdouble_ __y)); | |
| ^~~~~~~~~~~~~~ | |
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:85:1: error: expected ';' before 'extern' | |
85 | __MATHCALL_VEC (acosh,, (_Mdouble_ __x)); | |
| ^~~~~~~~~~~~~~ | |
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:87:1: error: expected ';' before 'extern' | |
87 | __MATHCALL_VEC (asinh,, (_Mdouble_ __x)); | |
| ^~~~~~~~~~~~~~ | |
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:89:1: error: expected ';' before 'extern' | |
89 | __MATHCALL_VEC (atanh,, (_Mdouble_ __x)); | |
| ^~~~~~~~~~~~~~ | |
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:119:1: error: expected ';' before 'extern' | |
119 | __MATHCALL_VEC (expm1,, (_Mdouble_ __x)); | |
| ^~~~~~~~~~~~~~ | |
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:122:1: error: expected ';' before 'extern' | |
122 | __MATHCALL_VEC (log1p,, (_Mdouble_ __x)); | |
| ^~~~~~~~~~~~~~ | |
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:147:1: error: expected ';' before 'extern' | |
147 | __MATHCALL_VEC (hypot,, (_Mdouble_ __x, _Mdouble_ __y)); | |
| ^~~~~~~~~~~~~~ | |
make: *** [/nix/store/93xclgc1izafj1dxcn8m2m76nsrwqhcw-R-4.2.1/lib/R/etc/Makeconf:168: VP_gamma.o] Error 1 | |
ERROR: compilation failed for package 'ExomeDepth' | |
* removing '/nix/store/g40nv37b7m8x6vl6a7s7xkjnyh7y70ai-r-ExomeDepth-1.1.15/library/ExomeDepth' |
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