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Created August 17, 2022 12:36
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ExomeDepth 1.1.15 fails to build
@nix { "action": "setPhase", "phase": "unpackPhase" }
unpacking sources
unpacking source archive /nix/store/5qml11z03vjrk9hgvm0y3amwfgc5dzy3-ExomeDepth_1.1.15.tar.gz
source root is ExomeDepth
setting SOURCE_DATE_EPOCH to timestamp 1578531002 of file ExomeDepth/MD5
@nix { "action": "setPhase", "phase": "patchPhase" }
patching sources
@nix { "action": "setPhase", "phase": "configurePhase" }
configuring
@nix { "action": "setPhase", "phase": "buildPhase" }
building
@nix { "action": "setPhase", "phase": "checkPhase" }
running tests
@nix { "action": "setPhase", "phase": "installPhase" }
installing
Warning message:
In normalizePath("~") :
path[1]="/homeless-shelter": No such file or directory
Warning message:
In normalizePath("~") :
path[1]="/homeless-shelter": No such file or directory
* installing *source* package 'ExomeDepth' ...
** package 'ExomeDepth' successfully unpacked and MD5 sums checked
** using staged installation
** libs
/nix/store/3d9zjv5vaqjxb9kwbdqsd194alwm97x1-gcc-wrapper-11.3.0/bin/c++ -std=gnu++14 -I"/nix/store/93xclgc1izafj1dxcn8m2m76nsrwqhcw-R-4.2.1/lib/R/include" -DNDEBUG -fpic -g -O2 -c CNV_estimate.cpp -o CN>
/nix/store/3d9zjv5vaqjxb9kwbdqsd194alwm97x1-gcc-wrapper-11.3.0/bin/cc -I"/nix/store/93xclgc1izafj1dxcn8m2m76nsrwqhcw-R-4.2.1/lib/R/include" -DNDEBUG -fpic -g -O2 -c ExomeDepth_init.c -o ExomeDepth_init>
/nix/store/3d9zjv5vaqjxb9kwbdqsd194alwm97x1-gcc-wrapper-11.3.0/bin/cc -I"/nix/store/93xclgc1izafj1dxcn8m2m76nsrwqhcw-R-4.2.1/lib/R/include" -DNDEBUG -fpic -g -O2 -c VP_gamma.c -o VP_gamma.o
In file included from gsl_math.h:22,
from VP_gamma.c:23:
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:85:1: error: expected ';' before 'extern'
85 | __MATHCALL_VEC (acosh,, (_Mdouble_ __x));
| ^~~~~~~~~~~~~~
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:87:1: error: expected ';' before 'extern'
87 | __MATHCALL_VEC (asinh,, (_Mdouble_ __x));
| ^~~~~~~~~~~~~~
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:89:1: error: expected ';' before 'extern'
89 | __MATHCALL_VEC (atanh,, (_Mdouble_ __x));
| ^~~~~~~~~~~~~~
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:119:1: error: expected ';' before 'extern'
119 | __MATHCALL_VEC (expm1,, (_Mdouble_ __x));
| ^~~~~~~~~~~~~~
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:122:1: error: expected ';' before 'extern'
122 | __MATHCALL_VEC (log1p,, (_Mdouble_ __x));
| ^~~~~~~~~~~~~~
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:147:1: error: expected ';' before 'extern'
147 | __MATHCALL_VEC (hypot,, (_Mdouble_ __x, _Mdouble_ __y));
| ^~~~~~~~~~~~~~
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:85:1: error: expected ';' before 'extern'
85 | __MATHCALL_VEC (acosh,, (_Mdouble_ __x));
| ^~~~~~~~~~~~~~
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:87:1: error: expected ';' before 'extern'
87 | __MATHCALL_VEC (asinh,, (_Mdouble_ __x));
| ^~~~~~~~~~~~~~
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:89:1: error: expected ';' before 'extern'
89 | __MATHCALL_VEC (atanh,, (_Mdouble_ __x));
| ^~~~~~~~~~~~~~
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:119:1: error: expected ';' before 'extern'
119 | __MATHCALL_VEC (expm1,, (_Mdouble_ __x));
| ^~~~~~~~~~~~~~
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:122:1: error: expected ';' before 'extern'
122 | __MATHCALL_VEC (log1p,, (_Mdouble_ __x));
| ^~~~~~~~~~~~~~
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:147:1: error: expected ';' before 'extern'
147 | __MATHCALL_VEC (hypot,, (_Mdouble_ __x, _Mdouble_ __y));
| ^~~~~~~~~~~~~~
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:85:1: error: expected ';' before 'extern'
85 | __MATHCALL_VEC (acosh,, (_Mdouble_ __x));
| ^~~~~~~~~~~~~~
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:87:1: error: expected ';' before 'extern'
87 | __MATHCALL_VEC (asinh,, (_Mdouble_ __x));
| ^~~~~~~~~~~~~~
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:89:1: error: expected ';' before 'extern'
89 | __MATHCALL_VEC (atanh,, (_Mdouble_ __x));
| ^~~~~~~~~~~~~~
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:119:1: error: expected ';' before 'extern'
119 | __MATHCALL_VEC (expm1,, (_Mdouble_ __x));
| ^~~~~~~~~~~~~~
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:122:1: error: expected ';' before 'extern'
122 | __MATHCALL_VEC (log1p,, (_Mdouble_ __x));
| ^~~~~~~~~~~~~~
/nix/store/1x86jfiwsp5qi448fcdkkzn7vmx4krv2-glibc-2.35-163-dev/include/bits/mathcalls.h:147:1: error: expected ';' before 'extern'
147 | __MATHCALL_VEC (hypot,, (_Mdouble_ __x, _Mdouble_ __y));
| ^~~~~~~~~~~~~~
make: *** [/nix/store/93xclgc1izafj1dxcn8m2m76nsrwqhcw-R-4.2.1/lib/R/etc/Makeconf:168: VP_gamma.o] Error 1
ERROR: compilation failed for package 'ExomeDepth'
* removing '/nix/store/g40nv37b7m8x6vl6a7s7xkjnyh7y70ai-r-ExomeDepth-1.1.15/library/ExomeDepth'
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