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arcaduf/Create and save annotations with ImageJ

Last active January 26, 2018 09:55
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Create and save annotations with ImageJ
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Create and save annotations with ImageJ
Load image.
Duplicate it as many times as many types of ROI you want to draw.
GO --> Edit --> Selection --> Add to Manager.
Draw the ROI and add it to the manager.
Click on each ROI / each group of ROIs and then click "More" --> "Fill" inside the manager.
Save the resulting image as separate .png.
In case you want to work with the .roi format of ImageJ, use this python code to read the .zip and the .roi:
https://gist.githubusercontent.com/luispedro/3437255/raw/d3f0be5efbe37efe27946c5fa21f5ef523cdac43/readroi.py
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