I hereby claim:
- I am armish on github.
- I am armish (https://keybase.io/armish) on keybase.
- I have a public key ASCZY1H-Zg-Yt8dFqLLOAdRtNJPEvhilMDnwYwWAfaZTpQo
To claim this, I am signing this object:
| #use "topfind";; | |
| #thread | |
| #use "biokepi_machine.ml";; | |
| open Biokepi | |
| open KEDSL | |
| open Cmdliner | |
| (* simple aliases *) |
I hereby claim:
To claim this, I am signing this object:
| # This Docker image is meant to serve commonly used Ensembl Genomes | |
| # already cached via PyEnsembl. Any application that depends on | |
| # the pyensembl library can use this image to speed things up | |
| # as caching these genomes is a huge bottleneck for most applications | |
| FROM ubuntu:latest | |
| MAINTAINER B. Arman Aksoy <[email protected]> | |
| ## We will be needing a few utilities to get this going |
| #!/bin/bash | |
| # Usage: | |
| # $ bash fastqc_to_email.sh REPORT_HEADER /path/to/file1.html /path/to/file2.html ... | |
| # | |
| # requires the unzipped folder containing the summaries to be present in the same folder | |
| # with the HTML report! | |
| JOB_NAME=$1 | |
| echo "# FASTQC ran for $JOB_NAME" |
| MoleculeType | Identifier | MoleculeName | ||
|---|---|---|---|---|
| Chemical Compounds | 15414 | S-adenosyl-L-methionine [ChEBI:15414] | ||
| Chemical Compounds | 16680 | S-adenosyl-L-homocysteine [ChEBI:16680] | ||
| Chemical Compounds | 15351 | acetyl-CoA [ChEBI:15351] | ||
| Chemical Compounds | 17154 | nicotinamide [ChEBI:17154] | ||
| Chemical Compounds | 16960 | ADP-D-ribose [ChEBI:16960] | ||
| Chemical Compounds | 15377 | water [ChEBI:15377] | ||
| Chemical Compounds | 15422 | ATP [ChEBI:15422] | ||
| Chemical Compounds | 15846 | NAD(+) [ChEBI:15846] | ||
| Chemical Compounds | 15379 | dioxygen [ChEBI:15379] |
| sampleWheelData <- list( | |
| list( | |
| name="R", | |
| children=list( | |
| list( | |
| name="R_1", | |
| children=list( | |
| list(name="R_1_1", colour="#160000"), | |
| list(name="R_1_2", colour="#220000"), | |
| list(name="R_1_3", colour="#280000") |