makefile for articles written in LaTeX with LyX

makefile

#Name of the main lyx and tex file
ARTICLE = article

#name of the bibliography
BIBLIO = biblio

#path to the mendeley bibliography where it comes from
MENDELEY_DATABASE = ../Bibtex\ Databases/thermostamping.bib

#path to LyX application
LYX = /Applications/LyX.app/Contents/MacOS/lyx

#path to MATLAB
MATLAB = /Applications/MATLAB_R2015b.app/bin/matlab

#name of the graffle source file for eps figures
GRAFFLE_FILE = figures.graffle

#path to the graffle2eps applescript
GRAFFLE2EPS_PATH = ~/Library/Scripts/

#get eps files produced from graffle or matlab
EPS_FROM_GRAFFLE:=$(shell awk -F"[<>]" '/SheetTitle/ {getline;print $$3".eps"}' $(GRAFFLE_FILE)/data.plist)
FIG_FILES=$(wildcard *.fig)
EPS_FROM_MATLAB=$(FIG_FILES:.fig=.eps)

all: $(ARTICLE).pdf sources.zip clean

$(ARTICLE).pdf: $(ARTICLE).tex $(BIBLIO).bib *.eps $(EPS_FROM_MATLAB) $(EPS_FROM_GRAFFLE)
	echo "-- MAKE -- PRODUCING PDF FILE"
	latex $(ARTICLE).tex
	bibtex $(ARTICLE)
	latex $(ARTICLE).tex
	latex $(ARTICLE).tex
	latex $(ARTICLE).tex
	dvipdfmx -o $(ARTICLE).pdf $(ARTICLE).dvi 

$(BIBLIO).bib: $(MENDELEY_DATABASE)
	echo "-- MAKE -- UPDATE BIBTEX FILE FROM MENDELEY"
	cp $(MENDELEY_DATABASE) $(BIBLIO).bib
	echo "-- MAKE -- CLEANING BIBTEX FILE"
	TMPFILE=`mktemp -t bibXXXXXXX.pdf`
	TMPFILE2=`mktemp -t bibXXXXXXX.pdf`
	grep -v "url =" $(BIBLIO).bib > $TMPFILE
	grep -v "doi =" $TMPFILE > $TMPFILE2
	grep -v "issn =" $TMPFILE2 > $TMPFILE
	grep -v "month =" $TMPFILE > $TMPFILE2
	grep -v "file =" $TMPFILE2 > $TMPFILE
	grep -v "keywords =" $TMPFILE > $TMPFILE2
	grep -v "isbn =" $TMPFILE2 > $TMPFILE
	grep -v "abstract =" $TMPFILE > $TMPFILE2
	cp $TMPFILE2 $(BIBLIO).bib
	rm -f $TMPFILE $TMPFILE2

$(ARTICLE).tex: $(ARTICLE).lyx
	echo "-- MAKE -- EXPORT LYX TO LATEX"
	$(LYX) -e latex $(ARTICLE).lyx -batch

sources.zip: $(ARTICLE).tex *.eps $(BIBLIO).bib
	echo "-- MAKE -- ARCHIVE FILES"
	zip -r sources.zip $(ARTICLE).tex $(BIBLIO).bib *.eps

%.eps: %.fig
	echo "-- MAKE -- EXPORT EPS FROM Matlab ($< to $@)"
	echo "figure(1); open('$<'); print(figure(1),'-depsc2','$@')" >> tmp.m
	$(MATLAB) -nodisplay -r "cd $(PWD); tmp; exit"
	rm tmp.m



.PHONY: omnigraffle

omnigraffle: $(GRAFFLE_FILE)
	echo "-- MAKE -- EXPORT EPS FROM OmniGraffle"
	osascript $(GRAFFLE2EPS_PATH)/graffle2eps.scpt $(GRAFFLE_FILE)

$(EPS_FROM_GRAFFLE): omnigraffle

clean:
	echo "-- MAKE -- CLEANING DIRECTORY"
	rm -f $(ARTICLE).log $(ARTICLE).dvi $(ARTICLE).aux $(ARTICLE).blg $(ARTICLE).toc $(ARTICLE).aux $(ARTICLE).bbl $(ARTICLE).glo $(ARTICLE).ist $(ARTICLE).out biblio.bbl biblio.blg *-eps-converted-to.pdf

commit: $(ARTICLE).tex $(BIBLIO).bib *.eps
	git status
	
diff: diff.tex $(ARTICLE).tex
	latex diff.tex
	bibtex diff
	latex diff.tex
	latex diff.tex
	latex diff.tex
	dvipdfmx -o diff.pdf diff.dvi
	rm diff.aux diff.bbl diff.blg diff.cb diff.dvi diff.log

diff.tex:
	echo "-- MAKE -- PRODUCING Diff FILE with revision $(REV)"
	latexdiff-vc  -t CULINECHBAR --append-safecmd="vect,tens,moy,norm" -r $(REV) $(ARTICLE).tex
	mv $(ARTICLE)-*.tex diff.tex