Dockerfile for Git Server

Dockerfile

FROM nextflow:19.07.0

# copy nextflow pipeline to /bfx/nextflow
ADD . /bfx/nextflow

# install git (and configure it), nginx, fcgiwrap and apache2-utils
RUN apt-get update && \
    apt-get install -y git && \
    git config --global user.email "[email protected]" && \
    git config --global user.name "company admin"  && \
    apt-get install -y nginx fcgiwrap apache2-utils && \
    cp -f /bfx/nextflow/nginx-default-site /etc/nginx/sites-available/default

# init, add & commit the code
RUN cd /bfx/nextflow && \
    git init && \
    git update-server-info && \
    git add -A && \
    git commit -m "checkin"

# /var/www/html/git is the nginx doc location, bare clone the repo and put it there
RUN mkdir -p /var/www/html/git && \
    cd /var/www/html/git && \
    git clone --bare /bfx/nextflow /var/www/html/git/nextflow.git && \
    chown -R www-data:www-data /var/www/html/git && \
    chmod -R 755 /var/www/html/git

# copy the run.sh to /root
RUN cp -f /bfx/nextflow/run.sh /root && \
    chmod a+x /root/run.sh