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February 25, 2015 05:17
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***HDF5 library version mismatched error***
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Warning! ***HDF5 library version mismatched error*** | |
The HDF5 header files used to compile this application do not match | |
the version used by the HDF5 library to which this application is linked. | |
Data corruption or segmentation faults may occur if the application continues. | |
This can happen when an application was compiled by one version of HDF5 but | |
linked with a different version of static or shared HDF5 library. | |
You should recompile the application or check your shared library related | |
settings such as 'LD_LIBRARY_PATH'. | |
You can, at your own risk, disable this warning by setting the environment | |
variable 'HDF5_DISABLE_VERSION_CHECK' to a value of '1'. | |
Setting it to 2 or higher will suppress the warning messages totally. | |
Headers are 1.8.13, library is 1.8.14 | |
SUMMARY OF THE HDF5 CONFIGURATION | |
================================= | |
General Information: | |
------------------- | |
HDF5 Version: 1.8.14 | |
Configured on: Thu Dec 4 22:14:51 GMT 2014 | |
Configured by: [email protected] | |
Configure mode: production | |
Host system: i386-apple-darwin14.0.0 | |
Uname information: Darwin miniyosemite.local 14.0.0 Darwin Kernel Version 14.0.0: Fri Sep 19 00:26:44 PDT 2014; root:xnu-2782.1.97~2/RELEASE_X86_64 x86_64 | |
Byte sex: little-endian | |
Libraries: static, shared | |
Installation point: /usr/local/Cellar/hdf5/1.8.14 | |
Compiling Options: | |
------------------ | |
Compilation Mode: production | |
C Compiler: /usr/local/Library/ENV/4.3/clang ( Apple LLVM version 6.0 ) | |
CFLAGS: | |
H5_CFLAGS: | |
AM_CFLAGS: | |
CPPFLAGS: | |
H5_CPPFLAGS: -DNDEBUG -UH5_DEBUG_API | |
AM_CPPFLAGS: -I/usr/local/opt/szip/include | |
Shared C Library: yes | |
Static C Library: yes | |
Statically Linked Executables: no | |
LDFLAGS: | |
H5_LDFLAGS: | |
AM_LDFLAGS: -L/usr/local/Cellar/hdf5/1.8.14/lib -L/usr/local/opt/szip/lib | |
Extra libraries: -lsz -lz -ldl -lm | |
Archiver: ar | |
Ranlib: ranlib | |
Debugged Packages: | |
API Tracing: no | |
Languages: | |
---------- | |
Fortran: no | |
C++: no | |
Features: | |
--------- | |
Parallel HDF5: no | |
High Level library: yes | |
Threadsafety: no | |
Default API Mapping: v18 | |
With Deprecated Public Symbols: yes | |
I/O filters (external): deflate(zlib),szip(encoder) | |
I/O filters (internal): shuffle,fletcher32,nbit,scaleoffset | |
MPE: no | |
Direct VFD: no | |
dmalloc: no | |
Clear file buffers before write: yes | |
Using memory checker: no | |
Function Stack Tracing: no | |
Strict File Format Checks: no | |
Optimization Instrumentation: no | |
Large File Support (LFS): yes | |
Bye... | |
*** Aborted at 1424838917 (unix time) try "date -d @1424838917" if you are using GNU date *** | |
PC: @ 0x7fff8ce03286 __pthread_kill | |
*** SIGABRT (@0x7fff8ce03286) received by PID 18724 (TID 0x7fff78521300) stack trace: *** | |
@ 0x7fff8d265f1a _sigtramp | |
@ 0x0 (unknown) | |
@ 0x7fff95b29b53 abort | |
@ 0x100b095a8 H5check_version | |
@ 0x1012ccc8c caffe::HDF5DataLayer<>::LoadHDF5FileData() | |
@ 0x1012cc4c3 caffe::HDF5DataLayer<>::LayerSetUp() | |
@ 0x100513a71 caffe::HDF5DataLayerTest_TestRead_Test<>::TestBody() | |
@ 0x10064fd1c testing::internal::HandleExceptionsInMethodIfSupported<>() | |
@ 0x10063e47a testing::Test::Run() | |
@ 0x10063f3a2 testing::TestInfo::Run() | |
@ 0x10063fa90 testing::TestCase::Run() | |
@ 0x100646246 testing::internal::UnitTestImpl::RunAllTests() | |
@ 0x100650524 testing::internal::HandleExceptionsInMethodIfSupported<>() | |
@ 0x100645f59 testing::UnitTest::Run() | |
@ 0x1004529e5 main | |
@ 0x7fff8e2785c9 start | |
make: *** [runtest] Abort trap: 6 |
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I meet the similar problem on centos, did you solve this?