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@aseetharam
Created September 29, 2017 14:18
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canu \
-d /project/rw_genome/arun_test/20170928_canu_b \
-p 20170928_canu_b \
genomeSize=770m \
maxMemory=1096g \
maxThreads=40 \
minReadLength=1000 \
corOutCoverage=35 \
gridOptionsJobName=canu_as-b \
corMhapFilterThreshold=0.0000000002 \
corMhapOptions="--threshold 0.78 --num-hashes 768 --num-min-matches 2 --ordered-sketch-size 1000 --ordered-kmer-size 14 --min-olap-length 2000 --repeat-idf-scale 50" \
-pacbio-raw /project/rw_genome/reads/Sequel_data/*.subreads.fastq
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