Created
September 29, 2017 14:18
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| canu \ | |
| -d /project/rw_genome/arun_test/20170928_canu_b \ | |
| -p 20170928_canu_b \ | |
| genomeSize=770m \ | |
| maxMemory=1096g \ | |
| maxThreads=40 \ | |
| minReadLength=1000 \ | |
| corOutCoverage=35 \ | |
| gridOptionsJobName=canu_as-b \ | |
| corMhapFilterThreshold=0.0000000002 \ | |
| corMhapOptions="--threshold 0.78 --num-hashes 768 --num-min-matches 2 --ordered-sketch-size 1000 --ordered-kmer-size 14 --min-olap-length 2000 --repeat-idf-scale 50" \ | |
| -pacbio-raw /project/rw_genome/reads/Sequel_data/*.subreads.fastq |
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