Singularity recipe for HiFiasm, a fast and accurate assembler designed for HiFi reads produced by PacBio. Building this fresh will get you the latest version

hifiasm_v0.20.0-r639.def

BootStrap: docker
From: ubuntu:20.04

%help
    HiFiasm is a fast and accurate assembler designed for HiFi reads produced by PacBio.

%labels
    Maintainer Arun Seetharam
    Version 0.1

%environment
    export PATH=/opt/hifiasm:$PATH

%post
    # Update and install dependencies
    apt-get update && apt-get install -y \
        build-essential \
        git \
        zlib1g-dev \
        libbz2-dev \
        liblzma-dev \
        && apt-get clean

    # Clone and build HiFiasm
    cd /opt
    git clone https://github.com/chhylp123/hifiasm
    cd hifiasm
    make

%runscript
    exec /opt/hifiasm/hifiasm "$@"

build it with:

apptainer build hifiasm_v0.20.0-r639.sif hifiasm_v0.20.0-r639.def