mem_run

canu \
   -d /project/rw_genome/arun_test/20170928_canu_c \
   -p 20170928_canu_c genomeSize=770m \
       maxMemory=128g \
	   maxThreads=16 \
	   gridOptionsJobName=canu_as1 \
	   gridOptionsExecutive="--mem-per-cpu=5g --time=2:00:00" \
	   gridOptionsCORMHAP="--mem-per-cpu=5g" \
	   gridOptionsCORMHAP="--time=1:00:00" \
	   gridOptionsOBTMHAP="--mem-per-cpu=5g --time=1:00:00" \
	   gridOptionsUTGMHAP="--mem-per-cpu=5g --time=1:00:00" \
	   gridOptionsCOROVL="--mem-per-cpu=5g --time=12:00:00" \
	   gridOptionsOBTOVL="--mem-per-cpu=5g --time=12:00:00" \
	   gridOptionsUTGOVL="--mem-per-cpu=5g --time=12:00:00" \
	   gridOptionsRED="--mem-per-cpu=4g --time=1:00:00" \
	   gridOptionsOEA="--mem-per-cpu=4g --time=12:00:00" \
	   corMhapFilterThreshold=0.0000000002 \
	   corMhapOptions="--threshold 0.78 --num-hashes 768 --num-min-matches 2 --ordered-sketch-size 1000 --ordered-kmer-size 14 --min-olap-length 2000 --repeat-idf-scale 50" \
	-pacbio-raw /project/rw_genome/reads/Sequel_data/*.subreads.fastq