aseetharam

#!/bin/bash

BEDTOOLS=$(dirname $(which bedtools))
FEATURECOUNTS=$(which featureCounts)
R=$(which R)

IDIR=$(pwd)
DIR=$(pwd)/GeneBed_output

GTF=gencode.vM30.annotation.gtf

aseetharam

Bedtools Cheatsheet

General:

Tools	Description
flank	Create new intervals from the flanks of existing intervals.
slop	Adjust the size of intervals.
shift	Adjust the position of intervals.
subtract	Remove intervals based on overlaps b/w two files.

aseetharam

"""==============================
Branded IPython Notebook Launcher
=================================

Executing this module will create an overlay over ipython notebooks own static
files and templates and overrides static files and templates and copies over all
example notebooks into a temporary folder and launches the ipython notebook server.

You can use this to offer an interactive tutorial for your library/framework/...