Created
March 8, 2023 17:58
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Experimenting with Zarr chunking
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import xarray as xr | |
import numpy as np | |
d1 = np.random.rand(133, 10, 10) | |
t1 = np.arange(1, 134) | |
xs = np.arange(1, 11) | |
ys = np.arange(1, 11) | |
chunking = {"time": 100, "x": 10, "y": 10} | |
dat1 = xr.Dataset( | |
{"data": (["time", "x", "y"], d1)}, | |
coords = {"time": t1} | |
)#.chunk(chunking) | |
dat1.to_zarr("test_1.zarr", mode="w") | |
dat1.to_zarr("test_append.zarr", mode="w") | |
dat1z = xr.open_zarr("test_1.zarr") | |
d2 = np.random.rand(3, 10, 10) | |
t2 = np.arange(np.max(t1)+1, np.max(t1)+1+d2.shape[0]) | |
dat2 = xr.Dataset( | |
{"data": (["time", "x", "y"], d2)}, | |
coords = {"time": t2} | |
).chunk({"time": 3}) | |
dat2.to_zarr("test_append.zarr", mode="a", append_dim="time") | |
d3 = np.random.rand(15, 10, 10) | |
t3 = np.arange(np.max(t2)+1, np.max(t2)+1+d3.shape[0]) | |
dat3 = xr.Dataset( | |
{"data": (["time", "x", "y"], d3)}, | |
coords = {"time": t3} | |
).chunk({"time": 15}) | |
dat3.to_zarr("test_append.zarr", mode="a", append_dim="time") | |
dat_123 = xr.open_zarr("test_append.zarr") | |
dat_123.chunks | |
dat_combined = xr.concat((dat1z, dat2, dat3), dim="time") | |
dat_combined.to_zarr("test_combined.zarr", mode="w", safe_chunks=False) | |
dat_combinedz = xr.open_zarr("test_combined.zarr") | |
dat_combinedz.chunks |
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