Created
July 4, 2016 13:19
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missing maps
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import omero, os, traceback | |
import omero.gateway | |
import time, datetime | |
from omero.rtypes import * | |
from omero.rtypes import unwrap | |
host = "localhost" | |
port = 4064 | |
rootpass = "ome" | |
user = "demo" | |
c = omero.client(host=host, port=port) | |
s = c.createSession(user, rootpass) | |
query = s.getQueryService() | |
update = s.getUpdateService() | |
expId = 2 #s.getAdminService().getEventContext().userId | |
p = omero.sys.ParametersI() | |
p.addString("ns", "openmicroscopy.org/omero/bulk_annotations") | |
p.addId(expId) | |
sqlcount = """ | |
select count( distinct ial.id) | |
from ImageAnnotationLink as ial | |
join ial.child a | |
where | |
a.ns = :ns | |
and a.details.owner.id = :id | |
""" | |
print sqlcount | |
rv = query.projection(sqlcount, p) | |
rv = unwrap(rv) | |
pagecount = rv[0][0] | |
print "Map annotations count: ", pagecount | |
sql = """ | |
select distinct ial | |
from ImageAnnotationLink as ial | |
join fetch ial.child a | |
where | |
a.ns = :ns | |
and a.details.owner.id = :id | |
order by a.id ASC | |
""" | |
empty_map = list() | |
limit = 1000 | |
total_maps = 0 | |
for page in xrange(1, (pagecount/limit)+2): | |
print 'PAGE', page, (page-1) * limit, limit | |
print 'total_maps', total_maps, 'emptyt', len(empty_map) | |
p.page((page-1) * limit, limit) | |
t_res = query.findAllByQuery(sql, p) | |
total_maps += len(t_res) | |
for ial in t_res: | |
if hasattr(ial.child, 'mapValue'): | |
ial.parent.unload() | |
ial.child.unload() | |
else: | |
empty_map.append(ial.child.id.val) | |
print 'RESULT', 'total_maps', total_maps | |
#print {k:v for (k,v) in duplicates.items() if v > 1} | |
print len(empty_map) | |
s.closeOnDestroy() | |
c.closeSession() | |
c.__del__() | |
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