Created
July 23, 2024 14:32
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pretty-blastn.sh
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| pretty-blastn () { | |
| column_names=(qaccver saccver pident length mismatch gapopen qstart qend sstart send slen evalue bitscore) | |
| column_names_string=$(IFS=' ' ; echo "${column_names[*]}") | |
| header=$(IFS=',' ; echo "${column_names[*]}") | |
| echo "${header}" | |
| blastn \ | |
| -outfmt "10 delim=, ${column_names_string}" \ | |
| "${@}" | |
| } |
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