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December 31, 2015 09:49
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Python code to graph my tooth flossing habits using both RPy and Matplotlib.
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import numpy as np | |
import pandas as pd | |
import matplotlib.pyplot as pyplot | |
import rpy2.robjects as robjects | |
from rpy2.robjects.packages import importr | |
data = pd.read_csv('FlossChart.csv', usecols = [0, 1], | |
parse_dates = True) | |
data['daynumber'] = data.date.map(lambda x: | |
pd.to_datetime(x).weekday()) | |
data['weekday'] = data.date.map(lambda x: | |
pd.to_datetime(x).strftime("%a")) | |
fractions = [] | |
names = [] | |
for day in range(0, 7): | |
relevantrows = data[data['daynumber'] == day] | |
names.append(relevantrows.weekday.iloc[1]) | |
fractions.append(relevantrows['flossed'].mean()) | |
#First let's plot it using pyplot. | |
pyplot.bar(np.arange(1, 8, 1), fractions) | |
pyplot.title('Flossing breakdown by day of the week') | |
pyplot.ylabel('Fraction of days flossed') | |
pyplot.xticks(np.arange(1.4, 8.4, 1), names) | |
pyplot.savefig('Flosschart-py.png') | |
#Now let's do it in RPy. | |
r = robjects.r | |
rfractions = robjects.FloatVector(fractions) | |
rdays = robjects.StrVector(names) | |
rfractions.names = rdays | |
grdevices = importr('grDevices') | |
grdevices.png(file = "Flosschart-r.png", | |
width = 512, height = 512) | |
robjects.r.barplot(rfractions, ylim = robjects.r.c(0, 1), | |
main = "Flossing breakdown by day of the week", | |
ylab = "Fraction of days flossed") | |
grdevices.dev_off() |
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