Created
June 23, 2024 23:32
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reproduce example for CV question
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## https://stats.stackexchange.com/questions/649052/selecting-the-correct-r-lme4-syntax-for-nested-models | |
library(lme4) | |
df <- data.frame(Subject = rep(factor(1:120), each = 200), | |
Group = rep(LETTERS[1:3], each = 40*200)) | |
with(df, table(Group)) | |
with(df, table(table(Subject))) | |
df$Accuracy <- simulate(~ Group + (1|Subject), | |
newdata = df, | |
newparams = list(beta = c(0, 1, 2), | |
theta = 1), | |
family = binomial, | |
seed = 101)[[1]] | |
model3 <- glmer(Accuracy ~ Group + (1|Group:Subject), | |
data=df, | |
family=binomial(link="logit"), | |
glmerControl(optimizer = "bobyqa"), | |
na.action=na.omit) | |
## replace 'Group:Subject' by 'Subject' | |
model4 <- update(model3, . ~ . - (1|Group:Subject) + (1|Subject)) | |
identical(car::Anova(model3), car::Anova(model4)) ## TRUE | |
identical(coef(summary(model3)), coef(summary(model4))) ## TRUE |
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