bede · March 12, 2016 18:16
diff --git a/Build failure on OS X 10.10.5 b/Build failure on OS X 10.10.5
 After replacing /usr/bin/gcc and /usr/bin/g++ with symlinks to GCC 5.3 binaries...

 l-umobcdja2:freebayes Bede$ make
 wget -q http://hypervolu.me/freebayes/build/v1.0.2-6-g3ce827d &
 cd src && /Applications/Xcode.app/Contents/Developer/usr/bin/make
 DETECTED_VERSION = v1.0.2-6-g3ce827d-dirty
 CURRENT_VERSION  = v1.0.2-6-g3ce827d
 Updating version file.
 cd ../bamtools && mkdir -p build && cd build && cmake .. && /Applications/Xcode.app/Contents/Developer/usr/bin/make
 -- Configuring done
 CMake Warning (dev):
  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   BamTools

 This warning is for project developers.  Use -Wno-dev to suppress it.

 -- Generating done
 -- Build files have been written to: /Users/Bede/Desktop/ooo/freebayes/bamtools/build
 [  0%] Built target SharedHeaders
 [  0%] Built target AlgorithmsHeaders
 [  0%] Built target APIHeaders
 [  1%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamAlignment.cpp.o
 [  2%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o
 [  3%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamReader.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamReader.cpp:11:
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamReader_p.h:28:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamRandomAccessController_p.h:28:1: warning: 
      class 'BamAlignment' was previously declared as a struct [-Wmismatched-tags]
 class BamAlignment;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamAlignment.h:32:19: note: previous use is here
 struct API_EXPORT BamAlignment {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamRandomAccessController_p.h:28:1: note: 
      did you mean struct here?
 class BamAlignment;
 ^~~~~
 struct
 1 warning generated.
 [  4%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamWriter.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.cpp:11:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:19:1: warning: class 'BamAlignment'
      was previously declared as a struct [-Wmismatched-tags]
 class BamAlignment;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamAlignment.h:32:19: note: previous use is here
 struct API_EXPORT BamAlignment {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:19:1: note: did you mean struct here?
 class BamAlignment;
 ^~~~~
 struct
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.cpp:12:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamHeader.h:22:1: warning: 'SamHeader' defined as
      a struct here but previously declared as a class [-Wmismatched-tags]
 struct API_EXPORT SamHeader {
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:20:1: note: did you mean struct here?
 class SamHeader;
 ^~~~~
 struct
 2 warnings generated.
 [  5%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamHeader.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamHeader.cpp:13:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamFormatParser_p.h:28:1: warning: 
      class 'SamHeader' was previously declared as a struct [-Wmismatched-tags]
 class SamHeader;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamHeader.h:22:19: note: previous use is here
 struct API_EXPORT SamHeader {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamFormatParser_p.h:28:1: note: did
      you mean struct here?
 class SamHeader;
 ^~~~~
 struct
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamHeader.cpp:15:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamHeaderValidator_p.h:30:1: warning: 
      class 'SamReadGroup' was previously declared as a struct [-Wmismatched-tags]
 class SamReadGroup;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamReadGroup.h:18:19: note: previous use is here
 struct API_EXPORT SamReadGroup {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamHeaderValidator_p.h:30:1: note: 
      did you mean struct here?
 class SamReadGroup;
 ^~~~~
 struct
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamHeaderValidator_p.h:31:1: warning: 
      class 'SamSequence' was previously declared as a struct [-Wmismatched-tags]
 class SamSequence;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamSequence.h:18:19: note: previous use is here
 struct API_EXPORT SamSequence {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamHeaderValidator_p.h:31:1: note: 
      did you mean struct here?
 class SamSequence;
 ^~~~~
 struct
 3 warnings generated.
 [  6%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamProgram.cpp.o
 [  7%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamProgramChain.cpp.o
 [  8%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamReadGroup.cpp.o
 [  9%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamReadGroupDictionary.cpp.o
 [ 10%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamSequence.cpp.o
 [ 11%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamSequenceDictionary.cpp.o
 [ 12%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamHeader_p.cpp.o
 [ 12%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamMultiReader_p.cpp.o
 [ 13%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamRandomAccessController_p.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamRandomAccessController_p.cpp:12:
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamReader_p.h:23:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamAlignment.h:32:1: warning: 'BamAlignment'
      defined as a struct here but previously declared as a class [-Wmismatched-tags]
 struct API_EXPORT BamAlignment {
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamRandomAccessController_p.h:28:1: note: 
      did you mean struct here?
 class BamAlignment;
 ^~~~~
 struct
 1 warning generated.
 [ 14%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamReader_p.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamReader_p.cpp:14:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamRandomAccessController_p.h:28:1: warning: 
      class 'BamAlignment' was previously declared as a struct [-Wmismatched-tags]
 class BamAlignment;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamAlignment.h:32:19: note: previous use is here
 struct API_EXPORT BamAlignment {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamRandomAccessController_p.h:28:1: note: 
      did you mean struct here?
 class BamAlignment;
 ^~~~~
 struct
 1 warning generated.
 [ 15%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamWriter_p.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamWriter_p.cpp:13:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamWriter_p.h:30:1: warning: class
      'BamAlignment' was previously declared as a struct [-Wmismatched-tags]
 class BamAlignment;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamAlignment.h:32:19: note: previous use is here
 struct API_EXPORT BamAlignment {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamWriter_p.h:30:1: note: did you
      mean struct here?
 class BamAlignment;
 ^~~~~
 struct
 1 warning generated.
 [ 16%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/index/BamIndexFactory_p.cpp.o
 [ 17%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/index/BamStandardIndex_p.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/index/BamStandardIndex_p.cpp:11:
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamReader_p.h:28:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamRandomAccessController_p.h:28:1: warning: 
      class 'BamAlignment' was previously declared as a struct [-Wmismatched-tags]
 class BamAlignment;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamAlignment.h:32:19: note: previous use is here
 struct API_EXPORT BamAlignment {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamRandomAccessController_p.h:28:1: note: 
      did you mean struct here?
 class BamAlignment;
 ^~~~~
 struct
 1 warning generated.
 [ 18%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/index/BamToolsIndex_p.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/index/BamToolsIndex_p.cpp:11:
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamReader_p.h:28:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamRandomAccessController_p.h:28:1: warning: 
      class 'BamAlignment' was previously declared as a struct [-Wmismatched-tags]
 class BamAlignment;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamAlignment.h:32:19: note: previous use is here
 struct API_EXPORT BamAlignment {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamRandomAccessController_p.h:28:1: note: 
      did you mean struct here?
 class BamAlignment;
 ^~~~~
 struct
 1 warning generated.
 [ 19%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamDeviceFactory_p.cpp.o
 [ 20%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamFile_p.cpp.o
 [ 21%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamFtp_p.cpp.o
 [ 22%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamHttp_p.cpp.o
 [ 23%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamPipe_p.cpp.o
 [ 24%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BgzfStream_p.cpp.o
 [ 25%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/ByteArray_p.cpp.o
 [ 26%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HostAddress_p.cpp.o
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/io/HostAddress_p.cpp:266:33: warning: 
      self-comparison always evaluates to false [-Wtautological-compare]
            return m_ip4Address < m_ip4Address;
                                ^
 1 warning generated.
 [ 27%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HostInfo_p.cpp.o
 [ 28%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HttpHeader_p.cpp.o
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/io/HttpHeader_p.cpp:33:19: warning: 
      unused variable 'TAB_CHAR' [-Wunused-const-variable]
 static const char TAB_CHAR     = '\t';
                  ^
 1 warning generated.
 [ 29%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/ILocalIODevice_p.cpp.o
 [ 30%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/RollingBuffer_p.cpp.o
 [ 31%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/TcpSocket_p.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/io/TcpSocket_p.cpp:12:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/io/TcpSocketEngine_p.h:33:1: warning: 
      'TcpSocketEngine' defined as a struct here but previously declared as a class
      [-Wmismatched-tags]
 struct TcpSocketEngine {
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/io/TcpSocket_p.h:32:1: note: did you
      mean struct here?
 class TcpSocketEngine;
 ^~~~~
 struct
 1 warning generated.
 [ 32%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_p.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/io/TcpSocketEngine_p.cpp:15:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/io/TcpSocketEngine_p.h:33:1: warning: 
      'TcpSocketEngine' defined as a struct here but previously declared as a class
      [-Wmismatched-tags]
 struct TcpSocketEngine {
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/io/TcpSocket_p.h:32:1: note: did you
      mean struct here?
 class TcpSocketEngine;
 ^~~~~
 struct
 1 warning generated.
 [ 33%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/io/TcpSocketEngine_unix_p.cpp:10:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/io/TcpSocketEngine_p.h:33:1: warning: 
      'TcpSocketEngine' defined as a struct here but previously declared as a class
      [-Wmismatched-tags]
 struct TcpSocketEngine {
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/io/TcpSocket_p.h:32:1: note: did you
      mean struct here?
 class TcpSocketEngine;
 ^~~~~
 struct
 1 warning generated.
 [ 34%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamFormatParser_p.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamFormatParser_p.cpp:12:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamFormatParser_p.h:28:1: warning: 
      class 'SamHeader' was previously declared as a struct [-Wmismatched-tags]
 class SamHeader;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamHeader.h:22:19: note: previous use is here
 struct API_EXPORT SamHeader {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamFormatParser_p.h:28:1: note: did
      you mean struct here?
 class SamHeader;
 ^~~~~
 struct
 1 warning generated.
 [ 35%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamFormatPrinter_p.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamFormatPrinter_p.cpp:12:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamFormatPrinter_p.h:28:1: warning: 
      class 'SamHeader' was previously declared as a struct [-Wmismatched-tags]
 class SamHeader;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamHeader.h:22:19: note: previous use is here
 struct API_EXPORT SamHeader {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamFormatPrinter_p.h:28:1: note: 
      did you mean struct here?
 class SamHeader;
 ^~~~~
 struct
 1 warning generated.
 [ 36%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamHeaderValidator_p.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamHeaderValidator_p.cpp:12:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamHeaderValidator_p.h:29:1: warning: 
      class 'SamHeader' was previously declared as a struct [-Wmismatched-tags]
 class SamHeader;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamHeader.h:22:19: note: previous use is here
 struct API_EXPORT SamHeader {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamHeaderValidator_p.h:29:1: note: 
      did you mean struct here?
 class SamHeader;
 ^~~~~
 struct
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamHeaderValidator_p.h:30:1: warning: 
      class 'SamReadGroup' was previously declared as a struct [-Wmismatched-tags]
 class SamReadGroup;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamReadGroup.h:18:19: note: previous use is here
 struct API_EXPORT SamReadGroup {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamHeaderValidator_p.h:30:1: note: 
      did you mean struct here?
 class SamReadGroup;
 ^~~~~
 struct
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamHeaderValidator_p.h:31:1: warning: 
      class 'SamSequence' was previously declared as a struct [-Wmismatched-tags]
 class SamSequence;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamSequence.h:18:19: note: previous use is here
 struct API_EXPORT SamSequence {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamHeaderValidator_p.h:31:1: note: 
      did you mean struct here?
 class SamSequence;
 ^~~~~
 struct
 3 warnings generated.
 [ 37%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/utils/BamException_p.cpp.o
 [ 38%] Linking CXX static library ../../../lib/libbamtools.a
 [ 38%] Built target BamTools-static
 [ 38%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o
 [ 39%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o
 [ 40%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamReader.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamReader.cpp:11:
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamReader_p.h:28:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamRandomAccessController_p.h:28:1: warning: 
      class 'BamAlignment' was previously declared as a struct [-Wmismatched-tags]
 class BamAlignment;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamAlignment.h:32:19: note: previous use is here
 struct API_EXPORT BamAlignment {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamRandomAccessController_p.h:28:1: note: 
      did you mean struct here?
 class BamAlignment;
 ^~~~~
 struct
 1 warning generated.
 [ 41%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.cpp:11:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:19:1: warning: class 'BamAlignment'
      was previously declared as a struct [-Wmismatched-tags]
 class BamAlignment;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamAlignment.h:32:19: note: previous use is here
 struct API_EXPORT BamAlignment {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:19:1: note: did you mean struct here?
 class BamAlignment;
 ^~~~~
 struct
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.cpp:12:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamHeader.h:22:1: warning: 'SamHeader' defined as
      a struct here but previously declared as a class [-Wmismatched-tags]
 struct API_EXPORT SamHeader {
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:20:1: note: did you mean struct here?
 class SamHeader;
 ^~~~~
 struct
 2 warnings generated.
 [ 42%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamHeader.cpp:13:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamFormatParser_p.h:28:1: warning: 
      class 'SamHeader' was previously declared as a struct [-Wmismatched-tags]
 class SamHeader;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamHeader.h:22:19: note: previous use is here
 struct API_EXPORT SamHeader {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamFormatParser_p.h:28:1: note: did
      you mean struct here?
 class SamHeader;
 ^~~~~
 struct
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamHeader.cpp:15:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamHeaderValidator_p.h:30:1: warning: 
      class 'SamReadGroup' was previously declared as a struct [-Wmismatched-tags]
 class SamReadGroup;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamReadGroup.h:18:19: note: previous use is here
 struct API_EXPORT SamReadGroup {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamHeaderValidator_p.h:30:1: note: 
      did you mean struct here?
 class SamReadGroup;
 ^~~~~
 struct
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamHeaderValidator_p.h:31:1: warning: 
      class 'SamSequence' was previously declared as a struct [-Wmismatched-tags]
 class SamSequence;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamSequence.h:18:19: note: previous use is here
 struct API_EXPORT SamSequence {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamHeaderValidator_p.h:31:1: note: 
      did you mean struct here?
 class SamSequence;
 ^~~~~
 struct
 3 warnings generated.
 [ 43%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o
 [ 44%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o
 [ 45%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o
 [ 46%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o
 [ 47%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o
 [ 48%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o
 [ 49%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o
 [ 50%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o
 [ 51%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamRandomAccessController_p.cpp:12:
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamReader_p.h:23:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamAlignment.h:32:1: warning: 'BamAlignment'
      defined as a struct here but previously declared as a class [-Wmismatched-tags]
 struct API_EXPORT BamAlignment {
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamRandomAccessController_p.h:28:1: note: 
      did you mean struct here?
 class BamAlignment;
 ^~~~~
 struct
 1 warning generated.
 [ 52%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamReader_p.cpp:14:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamRandomAccessController_p.h:28:1: warning: 
      class 'BamAlignment' was previously declared as a struct [-Wmismatched-tags]
 class BamAlignment;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamAlignment.h:32:19: note: previous use is here
 struct API_EXPORT BamAlignment {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamRandomAccessController_p.h:28:1: note: 
      did you mean struct here?
 class BamAlignment;
 ^~~~~
 struct
 1 warning generated.
 [ 53%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamWriter_p.cpp:13:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamWriter_p.h:30:1: warning: class
      'BamAlignment' was previously declared as a struct [-Wmismatched-tags]
 class BamAlignment;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamAlignment.h:32:19: note: previous use is here
 struct API_EXPORT BamAlignment {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamWriter_p.h:30:1: note: did you
      mean struct here?
 class BamAlignment;
 ^~~~~
 struct
 1 warning generated.
 [ 54%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o
 [ 55%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/index/BamStandardIndex_p.cpp:11:
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamReader_p.h:28:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamRandomAccessController_p.h:28:1: warning: 
      class 'BamAlignment' was previously declared as a struct [-Wmismatched-tags]
 class BamAlignment;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamAlignment.h:32:19: note: previous use is here
 struct API_EXPORT BamAlignment {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamRandomAccessController_p.h:28:1: note: 
      did you mean struct here?
 class BamAlignment;
 ^~~~~
 struct
 1 warning generated.
 [ 56%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/index/BamToolsIndex_p.cpp:11:
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamReader_p.h:28:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamRandomAccessController_p.h:28:1: warning: 
      class 'BamAlignment' was previously declared as a struct [-Wmismatched-tags]
 class BamAlignment;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamAlignment.h:32:19: note: previous use is here
 struct API_EXPORT BamAlignment {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/bam/BamRandomAccessController_p.h:28:1: note: 
      did you mean struct here?
 class BamAlignment;
 ^~~~~
 struct
 1 warning generated.
 [ 57%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o
 [ 58%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o
 [ 59%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o
 [ 60%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o
 [ 61%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o
 [ 62%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o
 [ 63%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o
 [ 64%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/io/HostAddress_p.cpp:266:33: warning: 
      self-comparison always evaluates to false [-Wtautological-compare]
            return m_ip4Address < m_ip4Address;
                                ^
 1 warning generated.
 [ 65%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o
 [ 66%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/io/HttpHeader_p.cpp:33:19: warning: 
      unused variable 'TAB_CHAR' [-Wunused-const-variable]
 static const char TAB_CHAR     = '\t';
                  ^
 1 warning generated.
 [ 67%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o
 [ 68%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o
 [ 69%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/io/TcpSocket_p.cpp:12:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/io/TcpSocketEngine_p.h:33:1: warning: 
      'TcpSocketEngine' defined as a struct here but previously declared as a class
      [-Wmismatched-tags]
 struct TcpSocketEngine {
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/io/TcpSocket_p.h:32:1: note: did you
      mean struct here?
 class TcpSocketEngine;
 ^~~~~
 struct
 1 warning generated.
 [ 70%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/io/TcpSocketEngine_p.cpp:15:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/io/TcpSocketEngine_p.h:33:1: warning: 
      'TcpSocketEngine' defined as a struct here but previously declared as a class
      [-Wmismatched-tags]
 struct TcpSocketEngine {
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/io/TcpSocket_p.h:32:1: note: did you
      mean struct here?
 class TcpSocketEngine;
 ^~~~~
 struct
 1 warning generated.
 [ 71%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/io/TcpSocketEngine_unix_p.cpp:10:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/io/TcpSocketEngine_p.h:33:1: warning: 
      'TcpSocketEngine' defined as a struct here but previously declared as a class
      [-Wmismatched-tags]
 struct TcpSocketEngine {
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/io/TcpSocket_p.h:32:1: note: did you
      mean struct here?
 class TcpSocketEngine;
 ^~~~~
 struct
 1 warning generated.
 [ 72%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamFormatParser_p.cpp:12:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamFormatParser_p.h:28:1: warning: 
      class 'SamHeader' was previously declared as a struct [-Wmismatched-tags]
 class SamHeader;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamHeader.h:22:19: note: previous use is here
 struct API_EXPORT SamHeader {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamFormatParser_p.h:28:1: note: did
      you mean struct here?
 class SamHeader;
 ^~~~~
 struct
 1 warning generated.
 [ 73%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamFormatPrinter_p.cpp:12:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamFormatPrinter_p.h:28:1: warning: 
      class 'SamHeader' was previously declared as a struct [-Wmismatched-tags]
 class SamHeader;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamHeader.h:22:19: note: previous use is here
 struct API_EXPORT SamHeader {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamFormatPrinter_p.h:28:1: note: 
      did you mean struct here?
 class SamHeader;
 ^~~~~
 struct
 1 warning generated.
 [ 74%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamHeaderValidator_p.cpp:12:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamHeaderValidator_p.h:29:1: warning: 
      class 'SamHeader' was previously declared as a struct [-Wmismatched-tags]
 class SamHeader;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamHeader.h:22:19: note: previous use is here
 struct API_EXPORT SamHeader {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamHeaderValidator_p.h:29:1: note: 
      did you mean struct here?
 class SamHeader;
 ^~~~~
 struct
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamHeaderValidator_p.h:30:1: warning: 
      class 'SamReadGroup' was previously declared as a struct [-Wmismatched-tags]
 class SamReadGroup;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamReadGroup.h:18:19: note: previous use is here
 struct API_EXPORT SamReadGroup {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamHeaderValidator_p.h:30:1: note: 
      did you mean struct here?
 class SamReadGroup;
 ^~~~~
 struct
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamHeaderValidator_p.h:31:1: warning: 
      class 'SamSequence' was previously declared as a struct [-Wmismatched-tags]
 class SamSequence;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamSequence.h:18:19: note: previous use is here
 struct API_EXPORT SamSequence {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/internal/sam/SamHeaderValidator_p.h:31:1: note: 
      did you mean struct here?
 class SamSequence;
 ^~~~~
 struct
 3 warnings generated.
 [ 75%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o
 [ 76%] Linking CXX shared library ../../../lib/libbamtools.dylib
 [ 76%] Built target BamTools
 [ 77%] Building CXX object src/third_party/jsoncpp/CMakeFiles/jsoncpp.dir/json_reader.cpp.o
 [ 78%] Building CXX object src/third_party/jsoncpp/CMakeFiles/jsoncpp.dir/json_value.cpp.o
 [ 79%] Building CXX object src/third_party/jsoncpp/CMakeFiles/jsoncpp.dir/json_writer.cpp.o
 [ 80%] Linking CXX static library ../../../../lib/libjsoncpp.a
 [ 80%] Built target jsoncpp
 [ 81%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/utils/bamtools_fasta.cpp:90:23: warning: comparison
      of unsigned expression < 0 is always false [-Wtautological-compare]
        if (seqLength < 0) 
            ~~~~~~~~~ ^ ~
 1 warning generated.
 [ 82%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o
 [ 83%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o
 [ 84%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o
 [ 85%] Linking CXX static library ../../../lib/libbamtools-utils.a
 [ 85%] Built target BamTools-utils
 [ 86%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o
 [ 87%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o
 [ 88%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o
 [ 89%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/toolkit/bamtools_filter.cpp:13:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:19:1: warning: class 'BamAlignment'
      was previously declared as a struct [-Wmismatched-tags]
 class BamAlignment;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamAlignment.h:32:19: note: previous use is here
 struct API_EXPORT BamAlignment {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:19:1: note: did you mean struct here?
 class BamAlignment;
 ^~~~~
 struct
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:20:1: warning: class 'SamHeader' was
      previously declared as a struct [-Wmismatched-tags]
 class SamHeader;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamHeader.h:22:19: note: previous use is here
 struct API_EXPORT SamHeader {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:20:1: note: did you mean struct here?
 class SamHeader;
 ^~~~~
 struct
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/toolkit/bamtools_filter.cpp:368:1: warning: 
      'FilterToolPrivate' defined as a class here but previously declared as a struct
      [-Wmismatched-tags]
 class FilterTool::FilterToolPrivate {
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/toolkit/bamtools_filter.h:31:9: note: did you mean
      class here?
        struct FilterToolPrivate;
        ^~~~~~
        class
 3 warnings generated.
 [ 90%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o
 [ 91%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o
 [ 92%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/toolkit/bamtools_merge.cpp:13:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:19:1: warning: class 'BamAlignment'
      was previously declared as a struct [-Wmismatched-tags]
 class BamAlignment;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamAlignment.h:32:19: note: previous use is here
 struct API_EXPORT BamAlignment {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:19:1: note: did you mean struct here?
 class BamAlignment;
 ^~~~~
 struct
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:20:1: warning: class 'SamHeader' was
      previously declared as a struct [-Wmismatched-tags]
 class SamHeader;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamHeader.h:22:19: note: previous use is here
 struct API_EXPORT SamHeader {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:20:1: note: did you mean struct here?
 class SamHeader;
 ^~~~~
 struct
 2 warnings generated.
 [ 93%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/toolkit/bamtools_random.cpp:13:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:19:1: warning: class 'BamAlignment'
      was previously declared as a struct [-Wmismatched-tags]
 class BamAlignment;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamAlignment.h:32:19: note: previous use is here
 struct API_EXPORT BamAlignment {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:19:1: note: did you mean struct here?
 class BamAlignment;
 ^~~~~
 struct
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:20:1: warning: class 'SamHeader' was
      previously declared as a struct [-Wmismatched-tags]
 class SamHeader;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamHeader.h:22:19: note: previous use is here
 struct API_EXPORT SamHeader {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:20:1: note: did you mean struct here?
 class SamHeader;
 ^~~~~
 struct
 2 warnings generated.
 [ 94%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/toolkit/bamtools_resolve.cpp:13:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:19:1: warning: class 'BamAlignment'
      was previously declared as a struct [-Wmismatched-tags]
 class BamAlignment;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamAlignment.h:32:19: note: previous use is here
 struct API_EXPORT BamAlignment {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:19:1: note: did you mean struct here?
 class BamAlignment;
 ^~~~~
 struct
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:20:1: warning: class 'SamHeader' was
      previously declared as a struct [-Wmismatched-tags]
 class SamHeader;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamHeader.h:22:19: note: previous use is here
 struct API_EXPORT SamHeader {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:20:1: note: did you mean struct here?
 class SamHeader;
 ^~~~~
 struct
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/toolkit/bamtools_resolve.cpp:48:19: warning: unused
      variable 'OPEN_BRACE_CHAR' [-Wunused-const-variable]
 static const char OPEN_BRACE_CHAR  = '[';
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/toolkit/bamtools_resolve.cpp:49:19: warning: unused
      variable 'CLOSE_BRACE_CHAR' [-Wunused-const-variable]
 static const char CLOSE_BRACE_CHAR = ']';
                  ^
 4 warnings generated.
 [ 95%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/toolkit/bamtools_revert.cpp:13:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:19:1: warning: class 'BamAlignment'
      was previously declared as a struct [-Wmismatched-tags]
 class BamAlignment;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamAlignment.h:32:19: note: previous use is here
 struct API_EXPORT BamAlignment {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:19:1: note: did you mean struct here?
 class BamAlignment;
 ^~~~~
 struct
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:20:1: warning: class 'SamHeader' was
      previously declared as a struct [-Wmismatched-tags]
 class SamHeader;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamHeader.h:22:19: note: previous use is here
 struct API_EXPORT SamHeader {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:20:1: note: did you mean struct here?
 class SamHeader;
 ^~~~~
 struct
 2 warnings generated.
 [ 96%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/toolkit/bamtools_sort.cpp:14:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:19:1: warning: class 'BamAlignment'
      was previously declared as a struct [-Wmismatched-tags]
 class BamAlignment;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamAlignment.h:32:19: note: previous use is here
 struct API_EXPORT BamAlignment {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:19:1: note: did you mean struct here?
 class BamAlignment;
 ^~~~~
 struct
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:20:1: warning: class 'SamHeader' was
      previously declared as a struct [-Wmismatched-tags]
 class SamHeader;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamHeader.h:22:19: note: previous use is here
 struct API_EXPORT SamHeader {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:20:1: note: did you mean struct here?
 class SamHeader;
 ^~~~~
 struct
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/toolkit/bamtools_sort.cpp:79:1: warning: 
      'SortToolPrivate' defined as a class here but previously declared as a struct
      [-Wmismatched-tags]
 class SortTool::SortToolPrivate {
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/toolkit/bamtools_sort.h:31:9: note: did you mean
      class here?
        struct SortToolPrivate;
        ^~~~~~
        class
 3 warnings generated.
 [ 97%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o
 In file included from /Users/Bede/Desktop/ooo/freebayes/bamtools/src/toolkit/bamtools_split.cpp:15:
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:19:1: warning: class 'BamAlignment'
      was previously declared as a struct [-Wmismatched-tags]
 class BamAlignment;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamAlignment.h:32:19: note: previous use is here
 struct API_EXPORT BamAlignment {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:19:1: note: did you mean struct here?
 class BamAlignment;
 ^~~~~
 struct
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:20:1: warning: class 'SamHeader' was
      previously declared as a struct [-Wmismatched-tags]
 class SamHeader;
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/SamHeader.h:22:19: note: previous use is here
 struct API_EXPORT SamHeader {
                  ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/api/BamWriter.h:20:1: note: did you mean struct here?
 class SamHeader;
 ^~~~~
 struct
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/toolkit/bamtools_split.cpp:108:1: warning: 
      'SplitToolPrivate' defined as a class here but previously declared as a struct
      [-Wmismatched-tags]
 class SplitTool::SplitToolPrivate {
 ^
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/toolkit/bamtools_split.h:32:9: note: did you mean
      class here?
        struct SplitToolPrivate;
        ^~~~~~
        class
 3 warnings generated.
 [ 98%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o
 [ 99%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/toolkit/bamtools.cpp:149:16: warning: equality
      comparison with extraneous parentheses [-Wparentheses-equality]
    if ( (argc == 1) ) return Help(argc, argv);
          ~~~~~^~~~
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/toolkit/bamtools.cpp:149:16: note: remove extraneous
      parentheses around the comparison to silence this warning
    if ( (argc == 1) ) return Help(argc, argv);
         ~     ^   ~
 /Users/Bede/Desktop/ooo/freebayes/bamtools/src/toolkit/bamtools.cpp:149:16: note: use '=' to turn
      this equality comparison into an assignment
    if ( (argc == 1) ) return Help(argc, argv);
               ^~
               =
 1 warning generated.
 [100%] Linking CXX executable ../../../bin/bamtools
 [100%] Built target bamtools_cmd
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c freebayes.cpp
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c BedReader.cpp
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c CNV.cpp
 gcc -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c fastlz.c	
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c Fasta.cpp
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c Parameters.cpp
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c Allele.cpp
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c Sample.cpp
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c Result.cpp
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c AlleleParser.cpp
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c Utility.cpp
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c Genotype.cpp
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c DataLikelihood.cpp
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c Multinomial.cpp
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c Ewens.cpp
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c ResultData.cpp
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c Dirichlet.cpp
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c Marginals.cpp
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c split.cpp
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c LeftAlign.cpp
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c IndelAllele.cpp
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c Bias.cpp
 g++    -c -o Contamination.o Contamination.cpp
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c NonCall.cpp
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c SegfaultHandler.cpp
 g++    -c -o ../vcflib/tabixpp/tabix.o ../vcflib/tabixpp/tabix.cpp
 cd ../vcflib/tabixpp && /Applications/Xcode.app/Contents/Developer/usr/bin/make
 gcc -c -g -Wall -O2 -fPIC  -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE  bgzf.c -o bgzf.o
 bgzf.c: In function 'bgzf_close':
 bgzf.c:630:8: warning: variable 'count' set but not used [-Wunused-but-set-variable]
    int count, block_length = deflate_block(fp, 0);
        ^
 gcc -c -g -Wall -O2 -fPIC  -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE  kstring.c -o kstring.o
 gcc -c -g -Wall -O2 -fPIC  -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE  knetfile.c -o knetfile.o
 gcc -c -g -Wall -O2 -fPIC  -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE  index.c -o index.o
 gcc -c -g -Wall -O2 -fPIC  -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE  bedidx.c -o bedidx.o
 ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
 ranlib libtabix.a
 gcc -c -g -Wall -O2 -fPIC  -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE  main.c -o main.o
 gcc -g -Wall -O2 -fPIC  -o tabix main.o -lm  -L. -ltabix -lz
 gcc -c -g -Wall -O2 -fPIC  -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE  bgzip.c -o bgzip.o
 gcc -g -Wall -O2 -fPIC  -o bgzip bgzip.o bgzf.o knetfile.o -lz
 g++ -g -Wall -O2 -fPIC  -o tabix++ main.cpp tabix.o bgzf.o -lm  -L. -ltabix -lz
 cd ../vcflib/smithwaterman && /Applications/Xcode.app/Contents/Developer/usr/bin/make
 g++    -c -o smithwaterman.o smithwaterman.cpp
 g++    -c -o BandedSmithWaterman.o BandedSmithWaterman.cpp
 g++    -c -o SmithWatermanGotoh.o SmithWatermanGotoh.cpp
 g++    -c -o Repeats.o Repeats.cpp
 g++    -c -o LeftAlign.o LeftAlign.cpp
 g++    -c -o IndelAllele.o IndelAllele.cpp
 g++ -c -o disorder.o disorder.c
  * linking smithwaterman
 ld: warning: option -s is obsolete and being ignored
 ld -r disorder.o BandedSmithWaterman.o SmithWatermanGotoh.o Repeats.o LeftAlign.o IndelAllele.o -o sw.o
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ -c ../vcflib/src/Variant.cpp
 g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../bamtools/src -I../ttmath -I../vcflib/src -I../vcflib/ freebayes.o BedReader.o CNV.o fastlz.o Fasta.o Parameters.o Allele.o Sample.o Result.o AlleleParser.o Utility.o Genotype.o DataLikelihood.o Multinomial.o Ewens.o ResultData.o Dirichlet.o Marginals.o split.o LeftAlign.o IndelAllele.o Bias.o Contamination.o NonCall.o SegfaultHandler.o ../vcflib/tabixpp/tabix.o ../vcflib/tabixpp/bgzf.o ../vcflib/smithwaterman/SmithWatermanGotoh.o ../vcflib/smithwaterman/disorder.c ../vcflib/smithwaterman/LeftAlign.o ../vcflib/smithwaterman/Repeats.o ../vcflib/smithwaterman/IndelAllele.o Variant.o ../bamtools/lib/libbamtools.a -o ../bin/freebayes -L./ -L../vcflib/tabixpp/ -L../bamtools/lib -ltabix -lz -lm
 Undefined symbols for architecture x86_64:
  "BamTools::BamMultiReader::Open(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)", referenced from:
      AlleleParser::openBams()      in AlleleParser.o
  "BamTools::BamAlignment::FindTag(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, char*&, unsigned int const&, unsigned int&) const", referenced from:
      AlleleParser::updateAlignmentQueue(long, std::vector<Allele*, std::allocator<Allele*> >&, bool) in AlleleParser.o
  "BamTools::BamMultiReader::GetHeaderText[abi:cxx11]() const", referenced from:
      AlleleParser::openBams()      in AlleleParser.o
  "BamTools::BamMultiReader::GetErrorString[abi:cxx11]() const", referenced from:
      AlleleParser::loadTarget(BedTarget*)       in AlleleParser.o
      AlleleParser::openBams()      in AlleleParser.o
  "BamTools::BamMultiReader::GetReferenceID(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const", referenced from:
      AlleleParser::loadReferenceSequence(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&) in AlleleParser.o
      AlleleParser::updateInputVariants(long, int) in AlleleParser.o
      AlleleParser::getInputVariantsInRegion(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, long, long) in AlleleParser.o
  "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::at(unsigned long) const", referenced from:
      BamTools::Internal::SamHeaderValidator::CheckNameFormat(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamHeaderValidator_p.cpp.o)
      caseInsensitiveCompare(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamHeaderValidator_p.cpp.o)
      BamTools::Internal::HttpRequestHeader::ParseLine(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int) in libbamtools.a(HttpHeader_p.cpp.o)
  "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::find(char, unsigned long) const", referenced from:
      BamTools::Internal::SamHeaderValidator::ValidateVersion()     in libbamtools.a(SamHeaderValidator_p.cpp.o)
      BamTools::Internal::BamFtp::ParseUrl(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamFtp_p.cpp.o)
      BamTools::Internal::BamFtp::ParsePassiveResponse()    in libbamtools.a(BamFtp_p.cpp.o)
      BamTools::Internal::BamHttp::ParseUrl(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamHttp_p.cpp.o)
      BamTools::Internal::HttpHeader::ParseLine(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int) in libbamtools.a(HttpHeader_p.cpp.o)
      BamTools::Internal::HttpRequestHeader::ParseLine(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int) in libbamtools.a(HttpHeader_p.cpp.o)
      BamTools::Internal::HttpResponseHeader::ParseLine(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int) in libbamtools.a(HttpHeader_p.cpp.o)
      ...
  "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::rfind(char, unsigned long) const", referenced from:
      BamTools::Internal::BamIndexFactory::FileExtension(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamIndexFactory_p.cpp.o)
      BamTools::Internal::HostAddress::ParseAddress()     in libbamtools.a(HostAddress_p.cpp.o)
  "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::compare(char const*) const", referenced from:
      BamTools::BamAlignment::BuildCharData()      in libbamtools.a(BamAlignment.cpp.o)
      BamTools::Internal::BamIndexFactory::FileExtension(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamIndexFactory_p.cpp.o)
      BamTools::Internal::BamDeviceFactory::CreateDevice(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamDeviceFactory_p.cpp.o)
  "std::__1::__vector_base_common<true>::__throw_length_error() const", referenced from:
      BamTools::BamAlignment::BamAlignment(BamTools::BamAlignment const&) in libbamtools.a(BamAlignment.cpp.o)
      void std::__1::vector<int, std::__1::allocator<int> >::__push_back_slow_path<int const>(int const&) in libbamtools.a(BamAlignment.cpp.o)
      void std::__1::vector<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::allocator<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > > >::__push_back_slow_path<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const>(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamAlignment.cpp.o)
      __ZNSt3__16vectorIN8BamTools7CigarOpENS_9allocatorIS2_EEE6assignIPS2_EENS_9enable_ifIXaasr21__is_forward_iteratorIT_EE5valuesr16is_constructibleIS2_NS_15iterator_traitsIS9_E9referenceEEE5valueEvE4typeES9_S9_ in libbamtools.a(BamMultiReader_p.cpp.o)
      void std::__1::vector<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::allocator<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > > >::__push_back_slow_path<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const>(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamMultiReader_p.cpp.o)
      std::__1::vector<BamTools::RefData, std::__1::allocator<BamTools::RefData> >::vector(std::__1::vector<BamTools::RefData, std::__1::allocator<BamTools::RefData> > const&) in libbamtools.a(BamMultiReader_p.cpp.o)
      void std::__1::vector<BamTools::Internal::MergeItem, std::__1::allocator<BamTools::Internal::MergeItem> >::__push_back_slow_path<BamTools::Internal::MergeItem const>(BamTools::Internal::MergeItem const&) in libbamtools.a(BamMultiReader_p.cpp.o)
      ...
  "std::__1::__vector_base_common<true>::__throw_out_of_range() const", referenced from:
      BamTools::Internal::BamMultiReaderPrivate::GetHeaderText() const in libbamtools.a(BamMultiReader_p.cpp.o)
      BamTools::SamReadGroupDictionary::Remove(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamReadGroupDictionary.cpp.o)
      BamTools::SamReadGroupDictionary::operator[](std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamReadGroupDictionary.cpp.o)
      BamTools::SamProgramChain::operator[](std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamSequenceDictionary::Remove(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamSequenceDictionary.cpp.o)
      BamTools::SamSequenceDictionary::operator[](std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamSequenceDictionary.cpp.o)
      BamTools::Internal::BamToolsIndex::ReadReferenceEntry(BamTools::Internal::BtiReferenceEntry&) in libbamtools.a(BamToolsIndex_p.cpp.o)
      ...
  "std::__1::__basic_string_common<true>::__throw_length_error() const", referenced from:
      std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::str() const in libbamtools.a(BamMultiReader_p.cpp.o)
      std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::str() const in libbamtools.a(SamHeader.cpp.o)
      std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::str() const in libbamtools.a(SamFormatPrinter_p.cpp.o)
      std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::str() const in libbamtools.a(SamSequence.cpp.o)
      std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::str() const in libbamtools.a(BgzfStream_p.cpp.o)
      std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::str() const in libbamtools.a(BamRandomAccessController_p.cpp.o)
      std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::str() const in libbamtools.a(BamStandardIndex_p.cpp.o)
      ...
  "std::__1::locale::use_facet(std::__1::locale::id&) const", referenced from:
      BamTools::Internal::BamMultiReaderPrivate::ValidateReaders() const in libbamtools.a(BamMultiReader_p.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BamMultiReader_p.cpp.o)
      BamTools::SamProgramChain::First()     in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::First() const in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::Last()     in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::Last() const in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::operator[](std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamProgramChain.cpp.o)
      ...
  "std::__1::ios_base::getloc() const", referenced from:
      BamTools::Internal::BamMultiReaderPrivate::ValidateReaders() const in libbamtools.a(BamMultiReader_p.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BamMultiReader_p.cpp.o)
      BamTools::SamProgramChain::First()     in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::First() const in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::Last()     in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::Last() const in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::operator[](std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamProgramChain.cpp.o)
      ...
  "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::at(unsigned long)", referenced from:
      BamTools::Internal::HttpResponseHeader::ParseLine(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int) in libbamtools.a(HttpHeader_p.cpp.o)
  "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::__init(char const*, unsigned long)", referenced from:
      BamTools::BamAlignment::BuildCharData()      in libbamtools.a(BamAlignment.cpp.o)
      BamTools::BamAlignment::SetErrorString(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) const in libbamtools.a(BamAlignment.cpp.o)
      BamTools::BamAlignment::SkipToNextTag(char, char*&, unsigned int&) const in libbamtools.a(BamAlignment.cpp.o)
      BamTools::BamAlignment::GetTagNames() const in libbamtools.a(BamAlignment.cpp.o)
      BamTools::BamAlignment::GetTagType(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, char&) const in libbamtools.a(BamAlignment.cpp.o)
      BamTools::Internal::BamMultiReaderPrivate::Close()    in libbamtools.a(BamMultiReader_p.cpp.o)
      BamTools::Internal::BamMultiReaderPrivate::SetErrorString(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) const in libbamtools.a(BamMultiReader_p.cpp.o)
      ...
  "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::__init(char const*, unsigned long, unsigned long)", referenced from:
      BamTools::BamAlignment::BuildCharData()      in libbamtools.a(BamAlignment.cpp.o)
      BamTools::BamAlignment::SetErrorString(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) const in libbamtools.a(BamAlignment.cpp.o)
      BamTools::BamAlignment::SkipToNextTag(char, char*&, unsigned int&) const in libbamtools.a(BamAlignment.cpp.o)
      BamTools::BamAlignment::GetTagType(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, char&) const in libbamtools.a(BamAlignment.cpp.o)
      std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > std::__1::operator+<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamAlignment.cpp.o)
      BamTools::Internal::BamMultiReaderPrivate::Close()    in libbamtools.a(BamMultiReader_p.cpp.o)
      BamTools::Internal::BamMultiReaderPrivate::SetErrorString(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) const in libbamtools.a(BamMultiReader_p.cpp.o)
      ...
  "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::__init(unsigned long, char)", referenced from:
      std::__1::ostreambuf_iterator<char, std::__1::char_traits<char> > std::__1::__pad_and_output<char, std::__1::char_traits<char> >(std::__1::ostreambuf_iterator<char, std::__1::char_traits<char> >, char const*, char const*, char const*, std::__1::ios_base&, char) in libbamtools.a(BamMultiReader_p.cpp.o)
      std::__1::ostreambuf_iterator<char, std::__1::char_traits<char> > std::__1::__pad_and_output<char, std::__1::char_traits<char> >(std::__1::ostreambuf_iterator<char, std::__1::char_traits<char> >, char const*, char const*, char const*, std::__1::ios_base&, char) in libbamtools.a(SamProgramChain.cpp.o)
      std::__1::ostreambuf_iterator<char, std::__1::char_traits<char> > std::__1::__pad_and_output<char, std::__1::char_traits<char> >(std::__1::ostreambuf_iterator<char, std::__1::char_traits<char> >, char const*, char const*, char const*, std::__1::ios_base&, char) in libbamtools.a(SamFormatPrinter_p.cpp.o)
      std::__1::ostreambuf_iterator<char, std::__1::char_traits<char> > std::__1::__pad_and_output<char, std::__1::char_traits<char> >(std::__1::ostreambuf_iterator<char, std::__1::char_traits<char> >, char const*, char const*, char const*, std::__1::ios_base&, char) in libbamtools.a(SamHeaderValidator_p.cpp.o)
      std::__1::ostreambuf_iterator<char, std::__1::char_traits<char> > std::__1::__pad_and_output<char, std::__1::char_traits<char> >(std::__1::ostreambuf_iterator<char, std::__1::char_traits<char> >, char const*, char const*, char const*, std::__1::ios_base&, char) in libbamtools.a(BgzfStream_p.cpp.o)
      std::__1::ostreambuf_iterator<char, std::__1::char_traits<char> > std::__1::__pad_and_output<char, std::__1::char_traits<char> >(std::__1::ostreambuf_iterator<char, std::__1::char_traits<char> >, char const*, char const*, char const*, std::__1::ios_base&, char) in libbamtools.a(BamRandomAccessController_p.cpp.o)
      std::__1::ostreambuf_iterator<char, std::__1::char_traits<char> > std::__1::__pad_and_output<char, std::__1::char_traits<char> >(std::__1::ostreambuf_iterator<char, std::__1::char_traits<char> >, char const*, char const*, char const*, std::__1::ios_base&, char) in libbamtools.a(BamStandardIndex_p.cpp.o)
      ...
  "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::append(char const*, unsigned long)", referenced from:
      BamTools::BamAlignment::BuildCharData()      in libbamtools.a(BamAlignment.cpp.o)
      BamTools::BamAlignment::SetErrorString(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) const in libbamtools.a(BamAlignment.cpp.o)
      std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > std::__1::operator+<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamAlignment.cpp.o)
      BamTools::Internal::BamMultiReaderPrivate::Close()    in libbamtools.a(BamMultiReader_p.cpp.o)
      BamTools::Internal::BamMultiReaderPrivate::CloseFiles(std::__1::vector<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::allocator<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > > > const&) in libbamtools.a(BamMultiReader_p.cpp.o)
      BamTools::Internal::BamMultiReaderPrivate::SetErrorString(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) const in libbamtools.a(BamMultiReader_p.cpp.o)
      BamTools::Internal::BamMultiReaderPrivate::CloseFile(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamMultiReader_p.cpp.o)
      ...
  "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::append(unsigned long, char)", referenced from:
      BamTools::BamAlignment::BuildCharData()      in libbamtools.a(BamAlignment.cpp.o)
      BamTools::Internal::BamMultiReaderPrivate::CloseFiles(std::__1::vector<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::allocator<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > > > const&) in libbamtools.a(BamMultiReader_p.cpp.o)
      BamTools::Internal::BamMultiReaderPrivate::CreateIndexes(BamTools::BamIndex::IndexType const&) in libbamtools.a(BamMultiReader_p.cpp.o)
      BamTools::Internal::BamMultiReaderPrivate::LocateIndexes(BamTools::BamIndex::IndexType const&) in libbamtools.a(BamMultiReader_p.cpp.o)
      BamTools::Internal::BamMultiReaderPrivate::Open(std::__1::vector<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::allocator<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > > > const&) in libbamtools.a(BamMultiReader_p.cpp.o)
      BamTools::Internal::BamMultiReaderPrivate::OpenIndexes(std::__1::vector<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::allocator<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > > > const&) in libbamtools.a(BamMultiReader_p.cpp.o)
      BamTools::Internal::BamMultiReaderPrivate::RewindReaders()     in libbamtools.a(BamMultiReader_p.cpp.o)
      ...
  "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::assign(char const*)", referenced from:
      BamTools::BamAlignment::BuildCharData()      in libbamtools.a(BamAlignment.cpp.o)
      BamTools::SamHeader::SetHeaderText(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamHeader.cpp.o)
      BamTools::Internal::BamToolsIndex::Create()    in libbamtools.a(BamToolsIndex_p.cpp.o)
      BamTools::Internal::BamToolsIndex::Jump(BamTools::BamRegion const&, bool*) in libbamtools.a(BamToolsIndex_p.cpp.o)
      BamTools::Internal::BamToolsIndex::Load(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamToolsIndex_p.cpp.o)
      BamTools::Internal::BamStandardIndex::Create()    in libbamtools.a(BamStandardIndex_p.cpp.o)
      BamTools::Internal::BamStandardIndex::Jump(BamTools::BamRegion const&, bool*) in libbamtools.a(BamStandardIndex_p.cpp.o)
      ...
  "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::assign(char const*, unsigned long)", referenced from:
      BamTools::BamAlignment::RemoveTag(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamAlignment.cpp.o)
      BamTools::Internal::BamReaderPrivate::LoadNextAlignment(BamTools::BamAlignment&) in libbamtools.a(BamReader_p.cpp.o)
  "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::resize(unsigned long, char)", referenced from:
      BamTools::BamAlignment::BuildCharData()      in libbamtools.a(BamAlignment.cpp.o)
      std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::overflow(int) in libbamtools.a(BamMultiReader_p.cpp.o)
      std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::str(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamMultiReader_p.cpp.o)
      std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::overflow(int) in libbamtools.a(SamHeader.cpp.o)
      std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::str(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamHeader.cpp.o)
      std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::overflow(int) in libbamtools.a(SamFormatParser_p.cpp.o)
      std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::str(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
      ...
  "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::reserve(unsigned long)", referenced from:
      BamTools::BamAlignment::BuildCharData()      in libbamtools.a(BamAlignment.cpp.o)
      BamTools::Internal::BamHttp::ParseUrl(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamHttp_p.cpp.o)
  "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::push_back(char)", referenced from:
      BamTools::BamAlignment::BuildCharData()      in libbamtools.a(BamAlignment.cpp.o)
      BamTools::BamAlignment::SkipToNextTag(char, char*&, unsigned int&) const in libbamtools.a(BamAlignment.cpp.o)
      BamTools::BamAlignment::GetTagType(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, char&) const in libbamtools.a(BamAlignment.cpp.o)
      std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::overflow(int) in libbamtools.a(BamMultiReader_p.cpp.o)
      std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::overflow(int) in libbamtools.a(SamHeader.cpp.o)
      std::__1::basic_istream<char, std::__1::char_traits<char> >& std::__1::getline<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_istream<char, std::__1::char_traits<char> >&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&, char) in libbamtools.a(SamFormatParser_p.cpp.o)
      std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::overflow(int) in libbamtools.a(SamFormatParser_p.cpp.o)
      ...
  "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::basic_string(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)", referenced from:
      BamTools::BamAlignment::BamAlignment(BamTools::BamAlignment const&) in libbamtools.a(BamAlignment.cpp.o)
      BamTools::BamAlignment::GetErrorString() const in libbamtools.a(BamAlignment.cpp.o)
      BamTools::BamAlignment::GetTagNames() const in libbamtools.a(BamAlignment.cpp.o)
      void std::__1::vector<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::allocator<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > > >::__push_back_slow_path<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const>(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamAlignment.cpp.o)
      BamTools::Internal::BamMultiReaderPrivate::Close()    in libbamtools.a(BamMultiReader_p.cpp.o)
      BamTools::Internal::BamMultiReaderPrivate::Filenames() const in libbamtools.a(BamMultiReader_p.cpp.o)
      BamTools::Internal::BamMultiReaderPrivate::CloseFile(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamMultiReader_p.cpp.o)
      ...
  "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::basic_string(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned long, unsigned long, std::__1::allocator<char> const&)", referenced from:
      BamTools::BamAlignment::BuildCharData()      in libbamtools.a(BamAlignment.cpp.o)
      BamTools::Internal::SamFormatParser::ParseSamLine(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
      BamTools::Internal::SamFormatParser::ParseHDLine(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
      BamTools::Internal::SamFormatParser::ParseSQLine(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
      BamTools::Internal::SamFormatParser::ParseRGLine(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
      BamTools::Internal::SamFormatParser::ParsePGLine(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
      BamTools::Internal::SamHeaderValidator::ValidateVersion()     in libbamtools.a(SamHeaderValidator_p.cpp.o)
      ...
  "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_string()", referenced from:
      BamTools::BamAlignment::BamAlignment(BamTools::BamAlignment const&) in libbamtools.a(BamAlignment.cpp.o)
      BamTools::BamAlignment::~BamAlignment() in libbamtools.a(BamAlignment.cpp.o)
      BamTools::BamAlignment::BuildCharData()      in libbamtools.a(BamAlignment.cpp.o)
      BamTools::BamAlignment::SetErrorString(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) const in libbamtools.a(BamAlignment.cpp.o)
      BamTools::BamAlignment::SkipToNextTag(char, char*&, unsigned int&) const in libbamtools.a(BamAlignment.cpp.o)
      BamTools::BamAlignment::GetTagNames() const in libbamtools.a(BamAlignment.cpp.o)
      BamTools::BamAlignment::GetTagType(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, char&) const in libbamtools.a(BamAlignment.cpp.o)
      ...
  "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::operator=(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)", referenced from:
      BamTools::BamAlignment::SetErrorString(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) const in libbamtools.a(BamAlignment.cpp.o)
      BamTools::Internal::BamMultiReaderPrivate::SetErrorString(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) const in libbamtools.a(BamMultiReader_p.cpp.o)
      BamTools::Internal::BamMultiReaderPrivate::PopNextCachedAlignment(BamTools::BamAlignment&, bool) in libbamtools.a(BamMultiReader_p.cpp.o)
      std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::str(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamMultiReader_p.cpp.o)
      BamTools::SamReadGroupDictionary::Remove(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamReadGroupDictionary.cpp.o)
      BamTools::SamHeader::IsValid(bool) const in libbamtools.a(SamHeader.cpp.o)
      std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::str(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamHeader.cpp.o)
      ...
  "std::__1::basic_istream<char, std::__1::char_traits<char> >::sentry::sentry(std::__1::basic_istream<char, std::__1::char_traits<char> >&, bool)", referenced from:
      std::__1::basic_istream<char, std::__1::char_traits<char> >& std::__1::getline<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_istream<char, std::__1::char_traits<char> >&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&, char) in libbamtools.a(SamFormatParser_p.cpp.o)
      std::__1::basic_istream<char, std::__1::char_traits<char> >& std::__1::getline<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_istream<char, std::__1::char_traits<char> >&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&, char) in libbamtools.a(BamFtp_p.cpp.o)
      std::__1::basic_istream<char, std::__1::char_traits<char> >& std::__1::getline<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_istream<char, std::__1::char_traits<char> >&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&, char) in libbamtools.a(HttpHeader_p.cpp.o)
      std::__1::basic_istream<char, std::__1::char_traits<char> >& std::__1::getline<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_istream<char, std::__1::char_traits<char> >&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&, char) in libbamtools.a(HostAddress_p.cpp.o)
  "std::__1::basic_istream<char, std::__1::char_traits<char> >::~basic_istream()", referenced from:
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_istringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o)
      ...
  "std::__1::basic_istream<char, std::__1::char_traits<char> >::~basic_istream()", referenced from:
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_istringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o)
      ...
  "std::__1::basic_istream<char, std::__1::char_traits<char> >::~basic_istream()", referenced from:
      BamTools::Internal::SamFormatParser::Parse(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
      std::__1::basic_istringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_istringstream() in libbamtools.a(SamFormatParser_p.cpp.o)
      virtual thunk to std::__1::basic_istringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_istringstream() in libbamtools.a(SamFormatParser_p.cpp.o)
      std::__1::basic_istringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_istringstream() in libbamtools.a(SamFormatParser_p.cpp.o)
      virtual thunk to std::__1::basic_istringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_istringstream() in libbamtools.a(SamFormatParser_p.cpp.o)
  "std::__1::basic_istream<char, std::__1::char_traits<char> >::operator>>(unsigned int&)", referenced from:
      BamTools::Internal::SamHeaderValidator::CheckLengthInRange(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamHeaderValidator_p.cpp.o)
  "std::__1::basic_istream<char, std::__1::char_traits<char> >::operator>>(unsigned short&)", referenced from:
      BamTools::Internal::TcpSocket::ConnectImpl(BamTools::Internal::HostInfo const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, BamTools::IBamIODevice::OpenMode) in libbamtools.a(TcpSocket_p.cpp.o)
  "std::__1::basic_ostream<char, std::__1::char_traits<char> >::put(char)", referenced from:
      BamTools::Internal::BamMultiReaderPrivate::ValidateReaders() const in libbamtools.a(BamMultiReader_p.cpp.o)
      BamTools::SamProgramChain::First()     in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::First() const in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::Last()     in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::Last() const in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::operator[](std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::Internal::SamFormatPrinter::PrintHD(std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o)
      ...
  "std::__1::basic_ostream<char, std::__1::char_traits<char> >::flush()", referenced from:
      BamTools::Internal::BamMultiReaderPrivate::ValidateReaders() const in libbamtools.a(BamMultiReader_p.cpp.o)
      BamTools::SamProgramChain::First()     in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::First() const in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::Last()     in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::Last() const in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::operator[](std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::Internal::SamFormatPrinter::PrintHD(std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o)
      ...
  "std::__1::basic_ostream<char, std::__1::char_traits<char> >::sentry::sentry(std::__1::basic_ostream<char, std::__1::char_traits<char> >&)", referenced from:
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BamMultiReader_p.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamProgramChain.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamFormatPrinter_p.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamHeaderValidator_p.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BgzfStream_p.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BamRandomAccessController_p.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BamStandardIndex_p.cpp.o)
      ...
  "std::__1::basic_ostream<char, std::__1::char_traits<char> >::sentry::~sentry()", referenced from:
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BamMultiReader_p.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamProgramChain.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamFormatPrinter_p.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamHeaderValidator_p.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BgzfStream_p.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BamRandomAccessController_p.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BamStandardIndex_p.cpp.o)
      ...
  "std::__1::basic_ostream<char, std::__1::char_traits<char> >::~basic_ostream()", referenced from:
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o)
      ...
  "std::__1::basic_ostream<char, std::__1::char_traits<char> >::~basic_ostream()", referenced from:
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o)
      ...
  "std::__1::basic_ostream<char, std::__1::char_traits<char> >::operator<<(int)", referenced from:
      BamTools::Internal::BamMultiReaderPrivate::ValidateReaders() const in libbamtools.a(BamMultiReader_p.cpp.o)
      BamTools::SamSequence::SamSequence(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int const&) in libbamtools.a(SamSequence.cpp.o)
      BamTools::Internal::BamRandomAccessController::CreateIndex(BamTools::Internal::BamReaderPrivate*, BamTools::BamIndex::IndexType const&) in libbamtools.a(BamRandomAccessController_p.cpp.o)
      BamTools::Internal::BamStandardIndex::Create()    in libbamtools.a(BamStandardIndex_p.cpp.o)
      BamTools::Internal::HttpRequestHeader::ToString() const in libbamtools.a(HttpHeader_p.cpp.o)
      BamTools::Internal::HttpResponseHeader::ToString() const in libbamtools.a(HttpHeader_p.cpp.o)
      BamTools::Internal::HostAddress::GetIPString() const in libbamtools.a(HostAddress_p.cpp.o)
      ...
  "std::__1::basic_ostream<char, std::__1::char_traits<char> >::operator<<(unsigned int)", referenced from:
      BamTools::Internal::BamStandardIndex::CheckBufferSize(char*&, unsigned int&, unsigned int const&) in libbamtools.a(BamStandardIndex_p.cpp.o)
      BamTools::Internal::BamStandardIndex::CheckBufferSize(unsigned char*&, unsigned int&, unsigned int const&) in libbamtools.a(BamStandardIndex_p.cpp.o)
      BamTools::Internal::BamStandardIndex::ReadIntoBuffer(unsigned int const&) in libbamtools.a(BamStandardIndex_p.cpp.o)
      BamTools::Internal::HostAddress::GetIPString() const in libbamtools.a(HostAddress_p.cpp.o)
  "std::__1::basic_ostream<char, std::__1::char_traits<char> >::operator<<(unsigned long)", referenced from:
      BamTools::Internal::SamHeaderValidator::PrintErrorMessages(std::__1::basic_ostream<char, std::__1::char_traits<char> >&) in libbamtools.a(SamHeaderValidator_p.cpp.o)
      BamTools::Internal::SamHeaderValidator::PrintWarningMessages(std::__1::basic_ostream<char, std::__1::char_traits<char> >&) in libbamtools.a(SamHeaderValidator_p.cpp.o)
      BamTools::Internal::BgzfStream::FlushBlock()     in libbamtools.a(BgzfStream_p.cpp.o)
  "std::__1::basic_ostream<char, std::__1::char_traits<char> >::operator<<(unsigned short)", referenced from:
      BamTools::Internal::TcpSocket::ConnectToHost(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned short, BamTools::IBamIODevice::OpenMode) in libbamtools.a(TcpSocket_p.cpp.o)
  "std::__1::basic_ostream<char, std::__1::char_traits<char> >::operator<<(long long)", referenced from:
      BamTools::Internal::BgzfStream::FlushBlock()     in libbamtools.a(BgzfStream_p.cpp.o)
      BamTools::Internal::BgzfStream::Seek(long long const&) in libbamtools.a(BgzfStream_p.cpp.o)
      BamTools::Internal::BamStandardIndex::ReadIntoBuffer(unsigned int const&) in libbamtools.a(BamStandardIndex_p.cpp.o)
      BamTools::Internal::BamFtp::ConnectDataSocket()    in libbamtools.a(BamFtp_p.cpp.o)
      BamTools::Internal::BamHttp::SendGetRequest(unsigned long) in libbamtools.a(BamHttp_p.cpp.o)
  "std::__1::basic_iostream<char, std::__1::char_traits<char> >::~basic_iostream()", referenced from:
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o)
      ...
  "std::__1::basic_iostream<char, std::__1::char_traits<char> >::~basic_iostream()", referenced from:
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o)
      ...
  "std::__1::basic_iostream<char, std::__1::char_traits<char> >::~basic_iostream()", referenced from:
      BamTools::Internal::BamMultiReaderPrivate::ValidateReaders() const in libbamtools.a(BamMultiReader_p.cpp.o)
      std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(BamMultiReader_p.cpp.o)
      non-virtual thunk to std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(BamMultiReader_p.cpp.o)
      virtual thunk to std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(BamMultiReader_p.cpp.o)
      std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(BamMultiReader_p.cpp.o)
      non-virtual thunk to std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(BamMultiReader_p.cpp.o)
      virtual thunk to std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(BamMultiReader_p.cpp.o)
      ...
  "std::__1::basic_streambuf<char, std::__1::char_traits<char> >::sync()", referenced from:
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o)
      ...
  "std::__1::basic_streambuf<char, std::__1::char_traits<char> >::imbue(std::__1::locale const&)", referenced from:
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o)
      ...
  "std::__1::basic_streambuf<char, std::__1::char_traits<char> >::uflow()", referenced from:
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o)
      ...
  "std::__1::basic_streambuf<char, std::__1::char_traits<char> >::setbuf(char*, long)", referenced from:
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o)
      ...
  "std::__1::basic_streambuf<char, std::__1::char_traits<char> >::xsgetn(char*, long)", referenced from:
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o)
      ...
  "std::__1::basic_streambuf<char, std::__1::char_traits<char> >::xsputn(char const*, long)", referenced from:
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o)
      ...
  "std::__1::basic_streambuf<char, std::__1::char_traits<char> >::showmanyc()", referenced from:
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o)
      vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o)
      ...
  "std::__1::basic_streambuf<char, std::__1::char_traits<char> >::basic_streambuf()", referenced from:
      BamTools::Internal::BamMultiReaderPrivate::ValidateReaders() const in libbamtools.a(BamMultiReader_p.cpp.o)
      BamTools::SamHeader::IsValid(bool) const in libbamtools.a(SamHeader.cpp.o)
      BamTools::Internal::SamFormatParser::Parse(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
      BamTools::Internal::SamFormatParser::Split(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, char) in libbamtools.a(SamFormatParser_p.cpp.o)
      BamTools::Internal::SamFormatPrinter::ToString() const in libbamtools.a(SamFormatPrinter_p.cpp.o)
      BamTools::Internal::SamHeaderValidator::CheckLengthInRange(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamHeaderValidator_p.cpp.o)
      BamTools::SamSequence::SamSequence(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int const&) in libbamtools.a(SamSequence.cpp.o)
      ...
  "std::__1::basic_streambuf<char, std::__1::char_traits<char> >::~basic_streambuf()", referenced from:
      BamTools::Internal::BamMultiReaderPrivate::ValidateReaders() const in libbamtools.a(BamMultiReader_p.cpp.o)
      std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(BamMultiReader_p.cpp.o)
      non-virtual thunk to std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(BamMultiReader_p.cpp.o)
      virtual thunk to std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(BamMultiReader_p.cpp.o)
      std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(BamMultiReader_p.cpp.o)
      non-virtual thunk to std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(BamMultiReader_p.cpp.o)
      virtual thunk to std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(BamMultiReader_p.cpp.o)
      ...
  "std::__1::cerr", referenced from:
      BamTools::SamHeader::IsValid(bool) const in libbamtools.a(SamHeader.cpp.o)
      BamTools::SamProgramChain::First()     in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::First() const in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::Last()     in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::Last() const in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::operator[](std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamProgramChain.cpp.o)
  "std::__1::ctype<char>::id", referenced from:
      BamTools::Internal::BamMultiReaderPrivate::ValidateReaders() const in libbamtools.a(BamMultiReader_p.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BamMultiReader_p.cpp.o)
      BamTools::SamProgramChain::First()     in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::First() const in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::Last()     in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::Last() const in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::operator[](std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamProgramChain.cpp.o)
      ...
  "void std::__1::__sort<std::__1::__less<long long, long long>&, long long*>(long long*, long long*, std::__1::__less<long long, long long>&)", referenced from:
      BamTools::Internal::BamStandardIndex::GetOffset(BamTools::BamRegion const&, long long&, bool*) in libbamtools.a(BamStandardIndex_p.cpp.o)
  "void std::__1::__sort<std::__1::__less<unsigned long long, unsigned long long>&, unsigned long long*>(unsigned long long*, unsigned long long*, std::__1::__less<unsigned long long, unsigned long long>&)", referenced from:
      BamTools::Internal::BamStandardIndex::SortLinearOffsets(std::__1::vector<unsigned long long, std::__1::allocator<unsigned long long> >&) in libbamtools.a(BamStandardIndex_p.cpp.o)
      BamTools::Internal::BamStandardIndex::WriteLinearOffsets(int const&, std::__1::vector<unsigned long long, std::__1::allocator<unsigned long long> >&) in libbamtools.a(BamStandardIndex_p.cpp.o)
  "std::__1::locale::~locale()", referenced from:
      BamTools::Internal::BamMultiReaderPrivate::ValidateReaders() const in libbamtools.a(BamMultiReader_p.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BamMultiReader_p.cpp.o)
      BamTools::SamProgramChain::First()     in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::First() const in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::Last()     in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::Last() const in libbamtools.a(SamProgramChain.cpp.o)
      BamTools::SamProgramChain::operator[](std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamProgramChain.cpp.o)
      ...
  "std::__1::ios_base::__set_badbit_and_consider_rethrow()", referenced from:
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BamMultiReader_p.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamProgramChain.cpp.o)
      std::__1::basic_istream<char, std::__1::char_traits<char> >& std::__1::getline<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_istream<char, std::__1::char_traits<char> >&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&, char) in libbamtools.a(SamFormatParser_p.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamFormatPrinter_p.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamHeaderValidator_p.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BgzfStream_p.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BamRandomAccessController_p.cpp.o)
      ...
  "std::__1::ios_base::init(void*)", referenced from:
      BamTools::Internal::BamMultiReaderPrivate::ValidateReaders() const in libbamtools.a(BamMultiReader_p.cpp.o)
      BamTools::SamHeader::IsValid(bool) const in libbamtools.a(SamHeader.cpp.o)
      BamTools::Internal::SamFormatParser::Parse(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o)
      BamTools::Internal::SamFormatParser::Split(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, char) in libbamtools.a(SamFormatParser_p.cpp.o)
      BamTools::Internal::SamFormatPrinter::ToString() const in libbamtools.a(SamFormatPrinter_p.cpp.o)
      BamTools::Internal::SamHeaderValidator::CheckLengthInRange(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamHeaderValidator_p.cpp.o)
      BamTools::SamSequence::SamSequence(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int const&) in libbamtools.a(SamSequence.cpp.o)
      ...
  "std::__1::ios_base::clear(unsigned int)", referenced from:
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BamMultiReader_p.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamProgramChain.cpp.o)
      std::__1::basic_istream<char, std::__1::char_traits<char> >& std::__1::getline<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_istream<char, std::__1::char_traits<char> >&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&, char) in libbamtools.a(SamFormatParser_p.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamFormatPrinter_p.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamHeaderValidator_p.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BgzfStream_p.cpp.o)
      std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BamRandomAccessController_p.cpp.o)
      ...
  "std::__1::basic_ios<char, std::__1::char_traits<char> >::~basic_ios()", referenced from:
      BamTools::Internal::BamMultiReaderPrivate::ValidateReaders() const in libbamtools.a(BamMultiReader_p.cpp.o)
      std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(BamMultiReader_p.cpp.o)
      non-virtual thunk to std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(BamMultiReader_p.cpp.o)
      virtual thunk to std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(BamMultiReader_p.cpp.o)
      std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(BamMultiReader_p.cpp.o)
      non-virtual thunk to std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(BamMultiReader_p.cpp.o)
      virtual thunk to std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(BamMultiReader_p.cpp.o)
      ...
  "typeinfo for std::__1::basic_istream<char, std::__1::char_traits<char> >", referenced from:
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_istringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      typeinfo for std::__1::basic_istringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o)
      ...
  "typeinfo for std::__1::basic_ostream<char, std::__1::char_traits<char> >", referenced from:
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o)
      ...
  "typeinfo for std::__1::basic_iostream<char, std::__1::char_traits<char> >", referenced from:
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      typeinfo for std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      typeinfo for std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      typeinfo for std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      ...
  "typeinfo for std::__1::basic_streambuf<char, std::__1::char_traits<char> >", referenced from:
      typeinfo for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      typeinfo for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      typeinfo for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      typeinfo for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      typeinfo for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o)
      typeinfo for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o)
      typeinfo for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o)
      ...
  "non-virtual thunk to std::__1::basic_iostream<char, std::__1::char_traits<char> >::~basic_iostream()", referenced from:
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o)
      ...
  "non-virtual thunk to std::__1::basic_iostream<char, std::__1::char_traits<char> >::~basic_iostream()", referenced from:
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o)
      ...
  "virtual thunk to std::__1::basic_istream<char, std::__1::char_traits<char> >::~basic_istream()", referenced from:
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_istringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o)
      ...
  "virtual thunk to std::__1::basic_istream<char, std::__1::char_traits<char> >::~basic_istream()", referenced from:
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_istringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o)
      construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o)
      ...
  "virtual thunk to std::__1::basic_ostream<char, std::__1::char_traits<char> >::~basic_ostream()", referenced from:
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o)
      ...
  "virtual thunk to std::__1::basic_ostream<char, std::__1::char_traits<char> >::~basic_ostream()", referenced from:
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o)
      construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o)
      ...
  "virtual thunk to std::__1::basic_iostream<char, std::__1::char_traits<char> >::~basic_iostream()", referenced from:
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o)
      ...
  "virtual thunk to std::__1::basic_iostream<char, std::__1::char_traits<char> >::~basic_iostream()", referenced from:
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamMultiReader_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o)
      construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o)
      ...
 ld: symbol(s) not found for architecture x86_64
 collect2: error: ld returned 1 exit status
 make[1]: *** [../bin/freebayes] Error 1
 make: *** [all] Error 2
 l-umobcdja2:freebayes Bede$