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@prologic
prologic / LearnGoIn5mins.md
Last active November 5, 2024 02:14
Learn Go in ~5mins
# See official docs at https://dash.plotly.com
# pip install dash pandas
from dash import Dash, dcc, html, Input, Output
import plotly.express as px
import pandas as pd
df = pd.read_csv('https://raw.githubusercontent.com/plotly/datasets/master/gapminderDataFiveYear.csv')
@carlsmith
carlsmith / replace.py
Created April 5, 2017 02:08
A Python function that does multiple string replace ops in a single pass.
import re
def replace(string, substitutions):
substrings = sorted(substitutions, key=len, reverse=True)
regex = re.compile('|'.join(map(re.escape, substrings)))
return regex.sub(lambda match: substitutions[match.group(0)], string)
@5agado
5agado / Pandas and Seaborn.ipynb
Created February 20, 2017 13:33
Data Manipulation and Visualization with Pandas and Seaborn — A Practical Introduction
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@rmcelreath
rmcelreath / garden plots.R
Created November 4, 2016 09:34
Code for drawing the forking data gardens in Chapter 2 of "Statistical Rethinking" textbook
# functions for plotting garden of forking data plots
library(rethinking)
polar2screen <- function( dist, origin, theta ) {
## takes dist, angle and origin and returns x and y of destination point
vx <- cos(theta) * dist;
vy <- sin(theta) * dist;
c( origin[1]+vx , origin[2]+vy );
}
@teoliphant
teoliphant / rolling.py
Last active October 23, 2019 19:54
Create a function to make a "sliding_window" output array from an input array and a rolling_window size.
import numpy as np
def array_for_sliding_window(x, wshape):
"""Build a sliding-window representation of x.
The last dimension(s) of the output array contain the data of
the specific window. The number of dimensions in the output is
twice that of the input.
Parameters
@xenophonf
xenophonf / ubuntu-14.04.3-macbookpro8,2-openzfs-luks-refind.md
Last active February 20, 2023 23:31
Dual-boot Mac OS X (FileVault2) and Ubuntu (OpenZFS/LUKS)

Dual-boot Mac OS X (FileVault2) and Ubuntu (OpenZFS/LUKS)

This procedure results in a computer that runs both Mac OS X and Ubuntu in a dual-boot configuration, each operating system using full (whole) disk encryption, and with the Ubuntu root file system stored on a ZFS pool encrypted using LUKS. The specific hardware and software versions used to document this procedure are:

  • MacBookPro8,2
@bede
bede / ebi_restful_blast
Last active September 8, 2016 10:13
Serial BLASTing of multifasta sequences using Python3 and EBI's REST API
#!/usr/bin/env python3
import io
import sys
import time
import datetime
import requests
from Bio import SeqIO
@danielecook
danielecook / depth_of_coverage.py
Last active March 29, 2021 14:47
Calculate Depth of Coverage and Breadth of Coverage from a bam file. This function calculates by chromsome and for the entire genome. Additionally, if the mtchr (Mitochondrial chromosome name) is provided, nuclear coverage and the ratio of mtDNA:nuclear DNA is calculated. #bam #stats
#
# This script calculates the depth of coverage and breadth of coverage for a given bam.
# Outputs a dictionary containing the contig/chromosome names and the depth and breadth of coverage for each
# and for the entire genome.
#
# If you optionally specify the name of the mitochondrial chromosome (e.g. mtDNA, chrM, chrMT)
# The script will also generate breadth and depth of coverage for the nuclear genome AND the ratio
# of mtDNA:nuclearDNA; which can act as a proxy in some cases for mitochondrial count within an individual.
#
# Author: Daniel E. Cook
@DanHerbert
DanHerbert / fix-homebrew-npm.md
Last active September 15, 2024 20:33
Instructions on how to fix npm if you've installed Node through Homebrew on Mac OS X or Linuxbrew

OBSOLETE

This entire guide is based on an old version of Homebrew/Node and no longer applies. It was only ever intended to fix a specific error message which has since been fixed. I've kept it here for historical purposes, but it should no longer be used. Homebrew maintainers have fixed things and the options mentioned don't exist and won't work.

I still believe it is better to manually install npm separately since having a generic package manager maintain another package manager is a bad idea, but the instructions below don't explain how to do that.

Fixing npm On Mac OS X for Homebrew Users

Installing node through Homebrew can cause problems with npm for globally installed packages. To fix it quickly, use the solution below. An explanation is also included at the end of this document.