Benjamin F. Maier benmaier

Complex systems, generative art, electronic music.

benmaier / Newick2JSON.py

Last active June 4, 2020 11:50 — forked from grabear/Newick2JSON.py

Converts a newick file into JSON format for d3/TreeWidget javascript component

	import sys
	from ete3 import Tree
	import random

	def get_json(node):
	# Read ETE tag for duplication or speciation events
	if not hasattr(node, 'evoltype'):
	dup = random.sample(['N','Y'], 1)[0]
	elif node.evoltype == "S":
	dup = "N"