Batch TSF_seas2img from TIMESAT

Batch_TSF_seas2img_from_TIMESAT.md

Batch TSF_process and TSF_seas2img from TIMESAT

run_seas2img_2y.bat

@echo off
setlocal enabledelayedexpansion

:: Paths
set TOOL_PATH=C:\timesat33\timesat_fortran\tools\TSF_seas2img.exe
set INPUT_PATH=C:\timesat33\compiled\Win64\2y
set OUTPUT_PATH=X:\Temp\modis\lbn\gee\11_timesat_raw\bil\2y

:: Loop through the years
for /L %%i in (2002,1,2023) do (
    set /a year2=%%i+1
    
    :: For sos and 24,46
    %TOOL_PATH% "!INPUT_PATH!\lbn_2y_%%i_!year2!_gee_raw_TS.tpa" 1 24 46 -1 -2 "!OUTPUT_PATH!\lbn_2y_end_%%i_sos" 2

    :: For eos and 24,46
    %TOOL_PATH% "!INPUT_PATH!\lbn_2y_%%i_!year2!_gee_raw_TS.tpa" 2 24 46 -1 -2 "!OUTPUT_PATH!\lbn_2y_end_%%i_eos" 2

    :: For sos and 47,69
    %TOOL_PATH% "!INPUT_PATH!\lbn_2y_%%i_!year2!_gee_raw_TS.tpa" 1 47 69 -1 -2 "!OUTPUT_PATH!\lbn_2y_start_!year2!_sos" 2

    :: For eos and 47,69
    %TOOL_PATH% "!INPUT_PATH!\lbn_2y_%%i_!year2!_gee_raw_TS.tpa" 2 47 69 -1 -2 "!OUTPUT_PATH!\lbn_2y_start_!year2!_eos" 2
)

echo All done!
endlocal

run_seas2img_3y.bat

@echo off
setlocal enabledelayedexpansion

:: Paths
set TOOL_PATH=C:\timesat33\timesat_fortran\tools\TSF_seas2img.exe
set INPUT_PATH=C:\timesat33\compiled\Win64
set OUTPUT_PATH=X:\Temp\modis\lbn\gee\11_timesat_raw\bil\3y

:: Loop through the years
for /L %%i in (2003,1,2023) do (
    
    :: For sos and 47,92
    %TOOL_PATH% "!INPUT_PATH!\lbn_3y_%%i_gee_raw_TS.tpa" 1 47 92 -1 -2 "!OUTPUT_PATH!\lbn_pheno_8d_%%i_sos" 2

    :: For eos and 47,92
    %TOOL_PATH% "!INPUT_PATH!\lbn_3y_%%i_gee_raw_TS.tpa" 2 47 92 -1 -2 "!OUTPUT_PATH!\lbn_pheno_8d_%%i_eos" 2
)

echo All done!
endlocal

run_tsfprocess_2y.bat

@echo off
setlocal enabledelayedexpansion

:: Set paths
set TOOL_PATH=C:\timesat33\timesat_fortran\main\TSF_process.exe
set INPUT_DIR=C:\timesat33\compiled\Win64\2y
set NO_OF_PROCESSORS=1

:: Loop through each .set file in the directory
for %%f in (%INPUT_DIR%\*.set) do (
    echo Processing: %%f
    %TOOL_PATH% "%%f" %NO_OF_PROCESSORS%
)

echo All .set files processed!
endlocal

run_tsfprocess_3y.bat

@echo off
setlocal enabledelayedexpansion

:: Set paths
set TOOL_PATH=C:\timesat33\timesat_fortran\main\TSF_process.exe
set INPUT_DIR=C:\timesat33\compiled\Win64\3y
set NO_OF_PROCESSORS=1

:: Loop through each .set file in the directory
for %%f in (%INPUT_DIR%\*.set) do (
    echo Processing: %%f
    %TOOL_PATH% "%%f" %NO_OF_PROCESSORS%
)

echo All .set files processed!
endlocal

run_tsfprocess_3y_multicore.bat

@echo off
setlocal enabledelayedexpansion

:: Set paths
set TOOL_PATH=C:\timesat33\timesat_fortran\main\TSF_process.exe
set MERGE_TOOL_PATH=C:\timesat33\timesat_fortran\tools\TSF_merge.exe
set INPUT_DIR=C:\timesat33\compiled\Win64\3y
set BATCH_FILE_DIR=C:\timesat33\compiled\Win64

:: Hardcoded number of processors for multi-core processing
set NO_OF_PROCESSORS=10

:: Save the current PATH to restore later
set "original_path=%PATH%"

:: Add the directory of TSF_process.exe and TSF_merge to the PATH environment variable
set PATH=%PATH%;C:\timesat33\timesat_fortran\main;C:\timesat33\timesat_fortran\tools

:: Verify that the TOOL_PATH, MERGE_TOOL_PATH and INPUT_DIR exist
if not exist "%TOOL_PATH%" (
    echo Error: TOOL_PATH "%TOOL_PATH%" does not exist.
    goto end
)

if not exist "%MERGE_TOOL_PATH%" (
    echo Error: MERGE_TOOL_PATH "%MERGE_TOOL_PATH%" does not exist.
    goto end
)

if not exist "%INPUT_DIR%" (
    echo Error: INPUT_DIR "%INPUT_DIR%" does not exist.
    goto end
)

:: Loop through each .set file in the INPUT_DIR, excluding processed .set files
for /f "delims=" %%f in ('dir /b /a-d "%INPUT_DIR%\*.set" ^| findstr /v /i "_set[0-9]*.set"') do (
    set "full_path=%%f"
    set "file_path=%INPUT_DIR%\!full_path!"
    
    echo Processing: !file_path!
    
    :: Execute the TSF_process in parallel mode and specify the number of processors
    "!TOOL_PATH!" "!file_path!" %NO_OF_PROCESSORS% parallel
    
    :: Extract the filename without extension to identify the generated .bat file
    set "base_name=%%~nf"
    
    :: Construct the expected batch file name in the BATCH_FILE_DIR
    set "expected_batch_file=%BATCH_FILE_DIR%\!base_name!_script.bat"
    
    :: Wait for a moment to ensure the .bat file is generated
    timeout /t 5 /nobreak > NUL
    
    :: Check if the generated .bat file exists and execute it
    if exist "!expected_batch_file!" (
        echo Running generated batch file for parallel processing: !expected_batch_file!
        call "!expected_batch_file!"
    ) else (
        echo Warning: Expected batch file for parallel processing "!expected_batch_file!" not found.
    )
)

echo All .set files processed!

:: Restore the original PATH environment variable
set PATH=%original_path%

:end
endlocal