Galaxy Userinterface Tour

core.galaxy_ui.yaml

id: galaxy_ui
name: Galaxy UI
description: A gentle introduction to the Galaxy User Interface
title_default: "Welcome to Galaxy"

# A tour is made of several steps, each of them beginning with a dahs '-'
steps:
    # 'title's will be displayed in the header of each step-container
    # If you don't specify any title, a default title is used, defined above.
    - title: "Welcome to Galaxy"
      # 'content' is the actual text that is shown to the user
      content: "This short tour will walk you through Galaxy's user interface.<br>
                You can navigate with your arrow keys and leaf the tour at any time with Escape or the 'End tour' bottom."
      # backgrop is just one of many properties you can attach to one step-container,
      # a full reference can be found at http://bootstraptour.com/api/
      backdrop: true

    # 'element' is the JQuery Selector (http://api.jquery.com/category/selectors/) of the element you want to describe
    # In this case we want to highlight the Upload button with the `.upload-button` selector
    - element: ".upload-button"
      intro: "Galaxy supports many ways to get your data in.<br>
              Use this button to upload your data."
      # position of the text box relativ to the selected element
      position: "right"
      # You can trigger click() events on arbitrary elements before (preclick) or after (postclick) the element is shown
      postclick:
        - ".upload-button"

    - element: "button#btn-local"
      intro: "You can upload data from your computer."
      position: "top"
      postclick:
        - "button#btn-new"

    - element: "button#btn-new"
      intro: "Copy and Paste data directly into Galaxy or include URLs that will"
      position: "top"
      preclick:
        - ".upload-button"

    - title: "Insert URLs"
      element: "textarea#text-content"
      intro: "URLs separated by a line break are automatically downloaded by Galaxy."
      position: "top"
      textinsert: |
        https://raw.githubusercontent.com/bgruening/galaxytools/adf077b912ddebd97b07b947b855cdd2862ed8ef/tools/augustus/test-data/human_augustus.fa
        https://raw.githubusercontent.com/bgruening/galaxytools/adf077b912ddebd97b07b947b855cdd2862ed8ef/tools/sailfish/test-data/reads_2.fastq
        https://raw.githubusercontent.com/bgruening/galaxytools/adf077b912ddebd97b07b947b855cdd2862ed8ef/tools/statistics/test-data/anderson.tabular

    - title: "Start the upload"
      element: "button#btn-start"
      intro: "Upload the data into your Galaxy history."
      position: "bottom"
      postclick:
        - "button#btn-start"

    - title: "Start analysing your data"
      element: "button#btn-close"
      intro: "Closing the Upload Manager with this button or with a click next this window."
      position: "bottom"
      postclick:
        - "#btn-close"

    - element: "#left"
      intro: "This is your ToolBox. All Tools available in your Galaxy instance are located here."
      position: "right"

    - element: '#tool-search-query'
      intro: "You can search for tools by keywords."
      position: "right"
      textinsert: 'filter'

    - element: '#title_filter > a'
      intro: "Tools are grouped into categories to make them easier to find."
      position: "right"
      preclick:
        - "#title_filter a"

    - element: 'a[href$="tool_runner?tool_id=Filter1"]'
      intro: "Load a tool by clicking the underlined link."
      position: "right"
      postclick:
        - 'a[href$="tool_runner?tool_id=Filter1"]'

    - title: "Your Filter Tool"
      element: '#center-panel'
      intro: "Your tool is loaded into the Main Galaxy page."
      position: "right"
      #backdropContainer: 'background'
      #backdrop: true

    - title: "Tool parameters"
      element: '#uid-0'
      intro: "Your tool parameters. Choose your intput Datasets from the History and select your parameters."
      position: "right"

    - element: 'div.ui-form-help'
      intro: "Every Galaxy Tool has a help section with detailed information about the Tool and it's parameters.
              Have a look and study your tool in depth by reading it."
      position: "top"

    - element: '#execute'
      intro: "Run your tool and send it to the Compute Cluster.
              Don't be afraid to test different settings in parallel. Galaxy can handle mulitple runs of the same Tool."
      position: "right"
      preclick:
        - '#execute'

    - element: "#right"
      intro: "This is your Galaxy history! All anylysis steps will be recorded and can be redone at any time.<br>
              A running dataset is shown as yellow and if your calculation is done it turns green. If you dataset is
              grey this means you are queued and need to wait until your Tool can be started."
      position: "left"

    - title: 'Top panel'
      element: "#masthead"
      intro: "Your top panel will give you access to a lot of useful things."
      position: "bottom"

    - title: 'Analysis'
      element: "#analysis"
      intro: "Start your <b>analysis</b> from here."
      position: "bottom"

    - title: 'Workflows'
      element: "#workflow"
      intro: "Manage, Import, Export and Share your <b>Workflows</b>."
      position: "bottom"

    - title: 'Share everything - if you like!'
      element: "#shared"
      intro: "Get access to all <b>Workflows</b>, <b>Histories</b>, <b>Pages</b>, <b>Visualizations</b> and your <b>Data Library</b> that are shared with you."
      position: "bottom"

    - title: 'Visualize your data'
      element: "#visualization"
      intro: "Want to start visualize your data in Trackster? Start here!<br>Galaxy offers a lot more visualisations ..."
      position: "bottom"

    - title: 'Get help'
      element: "#help"
      intro: "Here you get more help from the Galaxy <b>Community</b> with Videos, a QA board and more Tours."
      position: "bottom"

    - title: 'User Preferences'
      element: "#user"
      intro: "Login and start your analysis!"
      position: "bottom"

    - title: 'Scratchbook'
      element: "#enable-scratchbook"
      intro: "Scatchbook offers you mulitple visualisations next to each other."
      position: "bottom"