Tool dependency definition for ViennaNGS

tool_dependencies.xml

<tool_dependency>
    <package name="perl" version="5.18.1">
        <repository name="package_perl_5_18" owner="iuc" prior_installation_required="True" />
    </package>
    <package name="samtools" version="0.1.19">
        <repository name="package_samtools_0_1_19" owner="iuc" prior_installation_required="True" />
    </package>
    <package name="bedtools" version="2.22">
        <repository name="package_bedtools_2_22" owner="iuc" prior_installation_required="True" />
    </package>
    <package name="perl_bio_viennangs" version="0.13">
        <install version="1.0">
            <actions>
                <action type="setup_perl_environment">
                    <repository name="package_perl_5_18" owner="iuc">
                        <package name="perl" version="5.18.1" />
                    </repository>
                    <package>http://www.cpan.org/authors/id/E/EX/EXODIST/Test-Simple-1.001014.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/T/TY/TYEMQ/Algorithm-Diff-1.1903.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/D/DA/DAGOLDEN/CPAN-Meta-YAML-0.012.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/D/DO/DOY/Try-Tiny-0.22.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/F/FR/FREW/Sub-Exporter-Progressive-0.001011.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/T/TM/TMTM/Class-Data-Inheritable-0.08.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/D/DR/DROLSKY/Devel-StackTrace-2.00.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/A/AD/ADAMK/Test-NoWarnings-1.04.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/D/DA/DAGOLDEN/Capture-Tiny-0.28.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/O/OV/OVID/Text-Diff-1.41.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/D/DA/DAGOLDEN/Sub-Uplevel-0.25.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/D/DA/DAGOLDEN/Parse-CPAN-Meta-1.4414.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/A/AD/ADAMK/Params-Util-1.07.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/R/RJ/RJBS/Sub-Install-0.928.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/Z/ZE/ZEFRAM/Module-Runtime-0.014.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/R/RJ/RJBS/Test-Fatal-0.014.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/T/TO/TOKUHIROM/Test-Requires-0.08.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/D/DO/DOY/Dist-CheckConflicts-0.11.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/E/ET/ETHER/B-Hooks-EndOfScope-0.14.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/R/RC/RCLAMP/Number-Compare-0.03.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/R/RC/RCLAMP/Text-Glob-0.09.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/G/GA/GAAS/IO-String-1.08.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/D/DR/DROLSKY/Exception-Class-1.39.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/R/RJ/RJBS/Test-Deep-0.115.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/D/DC/DCANTRELL/Test-Differences-0.63.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/E/EX/EXODIST/Test-Exception-0.36.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/C/CH/CHORNY/Test-Warn-0.30.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/A/AD/ADAMK/Class-Inspector-1.28.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/G/GW/GWYN/File-ShareDir-Install-0.10.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/D/DA/DAGOLDEN/CPAN-Meta-2.143240.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/E/ET/ETHER/Module-Metadata-1.000026.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/R/RJ/RJBS/Data-OptList-0.109.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/D/DR/DROLSKY/Module-Implementation-0.09.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/D/DO/DOY/Package-Stash-0.37.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/R/RI/RIBASUSHI/namespace-clean-0.25.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/B/BO/BOBTFISH/MRO-Compat-0.12.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/R/RG/RGARCIA/Sub-Identify-0.10.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/T/TO/TOBYINK/Exporter-Tiny-0.042.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/T/TO/TOKUHIROM/Devel-CheckBin-0.02.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/R/RC/RCLAMP/File-Find-Rule-0.33.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/A/AD/ADAMK/File-Find-Rule-Perl-1.13.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/E/ET/ETHER/Test-Warnings-0.020.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/N/NU/NUFFIN/Tie-ToObject-0.03.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/T/TO/TODDR/IO-Tty-1.12.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/D/DW/DWHEELER/Test-Pod-1.48.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/C/CM/CMUNGALL/Data-Stag-0.14.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/O/OV/OVID/Test-Most-0.34.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/E/ET/ETHER/URI-1.65.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/R/RE/REHSACK/File-ShareDir-1.102.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/L/LE/LEONT/CPAN-Meta-Check-0.010.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/E/ET/ETHER/Class-Load-0.22.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/E/ET/ETHER/Class-Load-XS-0.09.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/H/HA/HAARG/Devel-GlobalDestruction-0.13.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/I/IL/ILMARI/Devel-OverloadInfo-0.002.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/D/DO/DOY/Eval-Closure-0.12.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/R/RE/REHSACK/List-MoreUtils-0.405.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/P/PE/PEVANS/Scalar-List-Utils-1.41.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/E/ET/ETHER/Module-Runtime-Conflicts-0.001.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/D/DR/DROLSKY/Package-DeprecationManager-0.13.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/D/DO/DOY/Package-Stash-XS-0.28.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/R/RJ/RJBS/Sub-Exporter-0.987.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/E/ET/ETHER/Sub-Name-0.12.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/A/AD/ADAMK/Task-Weaken-1.04.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/E/ET/ETHER/Test-CleanNamespaces-0.18.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/D/DO/DOY/Data-Visitor-0.30.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/E/ET/ETHER/Hash-Util-FieldHash-Compat-0.08.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/R/RU/RURBAN/Set-Object-1.34.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/T/TO/TODDR/IPC-Run-0.94.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/A/AB/ABIGAIL/Regexp-Common-2013031301.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/N/NE/NEILB/AppConfig-1.69.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/G/GF/GFUJI/Test-LeakTrace-0.15.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.924.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/L/LD/LDS/Bio-SamTools-1.41.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/I/IN/INGY/File-Share-0.25.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/G/GR/GROMMEL/Math-Round-0.07.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/E/ET/ETHER/Moose-2.1403.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/N/NU/NUFFIN/MooseX-Clone-0.05.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/S/SA/SARTAK/MooseX-InstanceTracking-0.06.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/K/KW/KWILLIAMS/Path-Class-0.35.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/N/NW/NWCLARK/PerlIO-gzip-0.18.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/F/FA/FANGLY/Statistics-R-0.33.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/A/AB/ABW/Template-Toolkit-2.26.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/M/MH/MHX/Tie-Hash-Indexed-0.05.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/E/ET/ETHER/namespace-autoclean-0.24.tar.gz</package>
                    <package>http://www.cpan.org/authors/id/M/MT/MTW/Bio-ViennaNGS-v0.13.tar.gz</package>
                </action>
            </actions>
        </install>
        <readme><![CDATA[
            Perl package: Bio::ViennaNGS
        ]]>
        </readme>
    </package>
</tool_dependency>