Created
December 23, 2016 22:26
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| library(tidyverse) | |
| df <- data.frame(Group = c(rep("A", 7), rep("B", 7), rep("C", 7)), | |
| Time = c(rep(c(1:7), 3)), | |
| Result = c(100, 96.9, 85.1, 62.0, 30.7, 15.2, 9.6, | |
| 10.2, 14.8, 32.26, 45.85, 56.25, 70.1, 100, | |
| 100, 55.61, 3.26, -4.77, -7.21, -3.2, -5.6)) | |
| df %>% | |
| filter(Group != "B") %>% # filter out B because fails NLS fitting | |
| group_by(Group) %>% | |
| nest %>% | |
| mutate(model = map(data, ~ lm(Result ~ Time, data = .))) %>% | |
| mutate(model2 = map(data, ~nls(Result ~ a+(b-a)/(1+(Time/c)^d), data = ., start = c(a = -3, b = 85, c = 4, d = 10)))) %>% | |
| ungroup() %>% | |
| ggplot() | |
| ggplot(data = df[df$Group == "A",], aes(x = Time, y = Result)) + | |
| facet_wrap(~ Group) + | |
| geom_point() + | |
| geom_smooth(method = "nls", formula = y ~ a+(b-a)/(1+(x/c)^d), se = FALSE, | |
| method.args = list(start = c(a = -3, b = 85, c = 4, d = 10))) | |
| ggplot(data = df[df$Group == "B",], aes(x = Time, y = Result)) + | |
| facet_wrap(~ Group) + | |
| geom_point() + | |
| geom_smooth(method = "nls", formula = y ~ a+(b-a)/(1+(x/c)^d), se = FALSE, | |
| method.args = list(start = c(a = -3, b = 85, c = 4, d = 10))) | |
| ggplot(data = df[df$Group =="C",], aes(x = Time, y = Result)) + | |
| facet_wrap(~ Group) + | |
| geom_point() + | |
| geom_smooth(method = "nls", formula = y ~ a+(b-a)/(1+(x/c)^d), se = FALSE, | |
| method.args = list(start = c(a = -3, b = 85, c = 4, d = 10))) |
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Seems like part of the problem is the fact that group B fails to model with the NLS parameters supplied by OP:
https://groups.google.com/forum/#!topic/ggplot2/YgCqQX8JbPM
Eliminating this group allows the plot to complete and I believe this is what OP wants, but the starting parameters for B should be different from those in A and C. Or perhaps the data in B really can't be fit with nls(). I don't know much beyond lm() sadly.