Created
May 10, 2014 12:06
-
-
Save bmiles/42f979d079f2be7f266e to your computer and use it in GitHub Desktop.
r install gfortran issue
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
➜ ~ brew --config | |
HOMEBREW_VERSION: 0.9.5 | |
ORIGIN: https://github.com/Homebrew/homebrew.git | |
HEAD: cdec40e4cab0768084c92d9732295a7e337c39be | |
HOMEBREW_PREFIX: /usr/local | |
HOMEBREW_CELLAR: /usr/local/Cellar | |
CPU: dual-core 64-bit penryn | |
OS X: 10.9.2-x86_64 | |
Xcode: 5.1.1 | |
CLT: 5.1.0.0.1.1396320587 | |
Clang: 5.1 build 503 | |
X11: 2.7.5 => /opt/X11 | |
System Ruby: 1.8.7-358 | |
Perl: /usr/bin/perl | |
Python: /usr/bin/python | |
Ruby: /Users/Ben/.rvm/rubies/ruby-2.0.0-p247/bin/ruby | |
➜ ~ brew doctor | |
Your system is ready to brew. | |
➜ ~ brew install -v r 2>&1 | |
==> Using Homebrew-provided fortran compiler. | |
This may be changed by setting the FC environment variable. | |
==> Downloading http://cran.rstudio.com/src/base/R-3/R-3.1.0.tar.gz | |
Already downloaded: /Library/Caches/Homebrew/r-3.1.0.tar.gz | |
==> Verifying r-3.1.0.tar.gz checksum | |
tar xf /Library/Caches/Homebrew/r-3.1.0.tar.gz | |
==> ./configure --prefix=/usr/local/Cellar/r/3.1.0 --with-aqua --with-libintl-prefix=/usr/local/Cellar/gettext/0.18.3.2 --enable-R-framework --with-blas=-framework Accelerate --with-lapack | |
checking build system type... x86_64-apple-darwin13.1.0 | |
checking host system type... x86_64-apple-darwin13.1.0 | |
loading site script './config.site' | |
loading build-specific script './config.site' | |
checking for pwd... /bin/pwd | |
checking whether builddir is srcdir... yes | |
checking for working aclocal... missing | |
checking for working autoconf... missing | |
checking for working automake... missing | |
checking for working autoheader... missing | |
checking for gawk... no | |
checking for mawk... no | |
checking for nawk... no | |
checking for awk... awk | |
checking whether ln -s works... yes | |
checking for bison... bison -y | |
checking for ar... ar | |
checking for a BSD-compatible install... /usr/bin/install -c | |
checking for sed... /usr/local/Library/ENV/4.3/sed | |
checking for which... /usr/bin/which | |
checking for less... /usr/bin/less | |
checking for gtar... no | |
checking for gnutar... no | |
checking for tar... /usr/bin/tar | |
checking for tex... no | |
checking for pdftex... no | |
configure: WARNING: you cannot build PDF versions of the R manuals | |
checking for pdflatex... no | |
configure: WARNING: you cannot build PDF versions of vignettes and help pages | |
checking for makeindex... no | |
checking for makeinfo... /usr/bin/makeinfo | |
checking whether makeinfo version is at least 4.7... yes | |
checking for ginstall-info... no | |
checking for install-info... /usr/bin/install-info | |
checking for texi2dvi... /usr/bin/texi2dvi | |
checking for kpsewhich... no | |
checking for latex inconsolata package... checking for unzip... /usr/bin/unzip | |
checking for zip... /usr/bin/zip | |
checking for gzip... /usr/bin/gzip | |
checking for bzip2... /usr/bin/bzip2 | |
checking for firefox... no | |
checking for mozilla... no | |
checking for galeon... no | |
checking for opera... no | |
checking for xdg-open... no | |
checking for kfmclient... no | |
checking for gnome-moz-remote... no | |
checking for open... /usr/bin/open | |
using default browser ... /usr/bin/open | |
checking for acroread... no | |
checking for acroread4... no | |
checking for xdg-open... no | |
checking for evince... no | |
checking for xpdf... no | |
checking for gv... no | |
checking for gnome-gv... no | |
checking for ggv... no | |
checking for okular... no | |
checking for kpdf... no | |
checking for open... /usr/bin/open | |
checking for notangle... false | |
checking for realpath... false | |
checking for pkg-config... no | |
checking for gcc... clang | |
checking whether the C compiler works... yes | |
checking for C compiler default output file name... a.out | |
checking for suffix of executables... | |
checking whether we are cross compiling... no | |
checking for suffix of object files... o | |
checking whether we are using the GNU C compiler... yes | |
checking whether clang accepts -g... yes | |
checking for clang option to accept ISO C89... none needed | |
checking how to run the C preprocessor... clang -E | |
checking for grep that handles long lines and -e... /usr/bin/grep | |
checking for egrep... /usr/bin/grep -E | |
checking whether clang needs -traditional... no | |
checking how to run the C preprocessor... clang -E | |
defining F77 to be /usr/local/bin/gfortran | |
checking whether we are using the GNU Fortran 77 compiler... no | |
checking whether /usr/local/bin/gfortran accepts -g... no | |
checking whether we are using the GNU C++ compiler... yes | |
checking whether clang++ accepts -g... yes | |
checking how to run the C++ preprocessor... clang++ -E | |
checking whether __attribute__((visibility())) is supported... no | |
checking whether clang accepts -fvisibility... yes | |
checking whether /usr/local/bin/gfortran accepts -fvisibility... no | |
checking for ANSI C header files... yes | |
checking for sys/types.h... yes | |
checking for sys/stat.h... yes | |
checking for stdlib.h... yes | |
checking for string.h... yes | |
checking for memory.h... yes | |
checking for strings.h... yes | |
checking for inttypes.h... yes | |
checking for stdint.h... yes | |
checking for unistd.h... yes | |
checking minix/config.h usability... no | |
checking minix/config.h presence... no | |
checking for minix/config.h... no | |
checking whether it is safe to define __EXTENSIONS__... yes | |
checking whether we are using the GNU Objective C compiler... yes | |
checking whether clang accepts -g... yes | |
checking for Objective C++ compiler... trying some possibilities | |
checking whether clang++ can compile ObjC++... yes | |
clang++ | |
checking for a sed that does not truncate output... (cached) /usr/local/Library/ENV/4.3/sed | |
checking for fgrep... /usr/bin/grep -F | |
checking for ld used by clang... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld | |
checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no | |
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm | |
checking the name lister (/usr/bin/nm) interface... BSD nm | |
checking the maximum length of command line arguments... 196608 | |
checking whether the shell understands some XSI constructs... yes | |
checking whether the shell understands "+="... yes | |
checking for /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r | |
checking for objdump... no | |
checking how to recognize dependent libraries... pass_all | |
checking for strip... strip | |
checking for ranlib... ranlib | |
checking command to parse /usr/bin/nm output from clang object... ok | |
checking for dsymutil... dsymutil | |
checking for nmedit... nmedit | |
checking for lipo... lipo | |
checking for otool... otool | |
checking for otool64... no | |
checking for -single_module linker flag... yes | |
checking for -exported_symbols_list linker flag... yes | |
checking for dlfcn.h... yes | |
checking whether we are using the GNU C++ compiler... (cached) yes | |
checking whether clang++ accepts -g... (cached) yes | |
checking how to run the C++ preprocessor... clang++ -E | |
checking whether we are using the GNU Fortran 77 compiler... (cached) no | |
checking whether /usr/local/bin/gfortran accepts -g... (cached) no | |
checking for objdir... .libs | |
checking if clang supports -fno-rtti -fno-exceptions... yes | |
checking for clang option to produce PIC... -fno-common -DPIC | |
checking if clang PIC flag -fno-common -DPIC works... yes | |
checking if clang static flag -static works... no | |
checking if clang supports -c -o file.o... yes | |
checking if clang supports -c -o file.o... (cached) yes | |
checking whether the clang linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes | |
checking dynamic linker characteristics... darwin13.1.0 dyld | |
checking how to hardcode library paths into programs... immediate | |
checking whether stripping libraries is possible... yes | |
checking if libtool supports shared libraries... yes | |
checking whether to build shared libraries... yes | |
checking whether to build static libraries... no | |
checking for ld used by clang++... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld | |
checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no | |
checking whether the clang++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes | |
checking for clang++ option to produce PIC... -fno-common -DPIC | |
checking if clang++ PIC flag -fno-common -DPIC works... yes | |
checking if clang++ static flag -static works... no | |
checking if clang++ supports -c -o file.o... yes | |
checking if clang++ supports -c -o file.o... (cached) yes | |
checking whether the clang++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes | |
checking dynamic linker characteristics... darwin13.1.0 dyld | |
checking how to hardcode library paths into programs... immediate | |
checking if libtool supports shared libraries... yes | |
checking whether to build shared libraries... yes | |
checking whether to build static libraries... no | |
checking for /usr/local/bin/gfortran option to produce PIC... | |
checking if /usr/local/bin/gfortran static flag works... no | |
checking if /usr/local/bin/gfortran supports -c -o file.o... no | |
checking if /usr/local/bin/gfortran supports -c -o file.o... (cached) no | |
checking whether the /usr/local/bin/gfortran linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... no | |
checking dynamic linker characteristics... darwin13.1.0 dyld | |
checking how to hardcode library paths into programs... immediate | |
checking for sin in -lm... yes | |
checking for library containing dlopen... none required | |
checking readline/history.h usability... yes | |
checking readline/history.h presence... yes | |
checking for readline/history.h... yes | |
checking readline/readline.h usability... yes | |
checking readline/readline.h presence... yes | |
checking for readline/readline.h... yes | |
checking for rl_callback_read_char in -lreadline... yes | |
checking for history_truncate_file... yes | |
checking whether rl_completion_matches exists and is declared... yes | |
checking for ANSI C header files... (cached) yes | |
checking for dirent.h that defines DIR... yes | |
checking for library containing opendir... none required | |
checking for sys/wait.h that is POSIX.1 compatible... yes | |
checking arpa/inet.h usability... yes | |
checking arpa/inet.h presence... yes | |
checking for arpa/inet.h... yes | |
checking dl.h usability... no | |
checking dl.h presence... no | |
checking for dl.h... no | |
checking for dlfcn.h... (cached) yes | |
checking elf.h usability... no | |
checking elf.h presence... no | |
checking for elf.h... no | |
checking fcntl.h usability... yes | |
checking fcntl.h presence... yes | |
checking for fcntl.h... yes | |
checking floatingpoint.h usability... no | |
checking floatingpoint.h presence... no | |
checking for floatingpoint.h... no | |
checking fpu_control.h usability... no | |
checking fpu_control.h presence... no | |
checking for fpu_control.h... no | |
checking glob.h usability... yes | |
checking glob.h presence... yes | |
checking for glob.h... yes | |
checking grp.h usability... yes | |
checking grp.h presence... yes | |
checking for grp.h... yes | |
checking langinfo.h usability... yes | |
checking langinfo.h presence... yes | |
checking for langinfo.h... yes | |
checking netdb.h usability... yes | |
checking netdb.h presence... yes | |
checking for netdb.h... yes | |
checking netinet/in.h usability... yes | |
checking netinet/in.h presence... yes | |
checking for netinet/in.h... yes | |
checking pwd.h usability... yes | |
checking pwd.h presence... yes | |
checking for pwd.h... yes | |
checking sched.h usability... yes | |
checking sched.h presence... yes | |
checking for sched.h... yes | |
checking for strings.h... (cached) yes | |
checking sys/param.h usability... yes | |
checking sys/param.h presence... yes | |
checking for sys/param.h... yes | |
checking sys/resource.h usability... yes | |
checking sys/resource.h presence... yes | |
checking for sys/resource.h... yes | |
checking sys/select.h usability... yes | |
checking sys/select.h presence... yes | |
checking for sys/select.h... yes | |
checking sys/socket.h usability... yes | |
checking sys/socket.h presence... yes | |
checking for sys/socket.h... yes | |
checking for sys/stat.h... (cached) yes | |
checking sys/time.h usability... yes | |
checking sys/time.h presence... yes | |
checking for sys/time.h... yes | |
checking sys/times.h usability... yes | |
checking sys/times.h presence... yes | |
checking for sys/times.h... yes | |
checking sys/utsname.h usability... yes | |
checking sys/utsname.h presence... yes | |
checking for sys/utsname.h... yes | |
checking for unistd.h... (cached) yes | |
checking utime.h usability... yes | |
checking utime.h presence... yes | |
checking for utime.h... yes | |
checking errno.h usability... yes | |
checking errno.h presence... yes | |
checking for errno.h... yes | |
checking for inttypes.h... (cached) yes | |
checking limits.h usability... yes | |
checking limits.h presence... yes | |
checking for limits.h... yes | |
checking locale.h usability... yes | |
checking locale.h presence... yes | |
checking for locale.h... yes | |
checking stdarg.h usability... yes | |
checking stdarg.h presence... yes | |
checking for stdarg.h... yes | |
checking stdbool.h usability... yes | |
checking stdbool.h presence... yes | |
checking for stdbool.h... yes | |
checking for stdint.h... (cached) yes | |
checking for string.h... (cached) yes | |
checking whether setjmp.h is POSIX.1 compatible... yes | |
checking whether sigsetjmp is declared... yes | |
checking whether siglongjmp is declared... yes | |
checking for GNU C library with version >= 2... no | |
checking return type of signal handlers... void | |
checking for uint64_t... yes | |
checking for int64_t... yes | |
checking for int_fast64_t... yes | |
checking for pid_t... yes | |
checking for size_t... yes | |
checking whether SIZE_MAX is declared... yes | |
checking for blkcnt_t... yes | |
checking for type of socket length... socklen_t * | |
checking for stack_t... yes | |
checking for intptr_t... yes | |
checking for uintptr_t... yes | |
checking whether byte ordering is bigendian... no | |
checking for an ANSI C-conforming const... yes | |
checking for clang option to accept ISO C99... none needed | |
checking for clang option to accept ISO Standard C... (cached) none needed | |
checking for inline... inline | |
checking size of int... 4 | |
checking size of long... 8 | |
checking size of long long... 8 | |
checking size of double... 8 | |
checking size of size_t... 8 | |
checking size of long double... 16 | |
checking whether we can compute C Make dependencies... yes, using $(CC) -MM | |
checking whether clang supports -c -o FILE.lo... yes | |
checking for clang option to support OpenMP... unsupported | |
checking how to get verbose linking output from /usr/local/bin/gfortran... configure: WARNING: compilation failed | |
checking for Fortran 77 libraries of /usr/local/bin/gfortran... | |
checking how to get verbose linking output from clang... -v | |
checking for C libraries of clang... -L/usr/local/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/gettext/lib -L/usr/local/opt/libffi/lib -L/opt/X11/lib -lSystem /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/lib/darwin/libclang_rt.osx.a | |
checking for dummy main to link with Fortran 77 libraries... none | |
checking for Fortran 77 name-mangling scheme... configure: error: in `/private/tmp/r-l47o/R-3.1.0': | |
configure: error: cannot compile a simple Fortran program | |
See `config.log' for more details | |
==> Formula | |
Tap: homebrew/homebrew-science | |
Path: /usr/local/Library/Taps/homebrew/homebrew-science/r.rb | |
==> Configuration | |
HOMEBREW_VERSION: 0.9.5 | |
HEAD: cdec40e4cab0768084c92d9732295a7e337c39be | |
CPU: dual-core 64-bit penryn | |
OS X: 10.9.2-x86_64 | |
Xcode: 5.1.1 | |
CLT: 5.1.0.0.1.1396320587 | |
X11: 2.7.5 => /opt/X11 | |
==> ENV | |
HOMEBREW_CC: clang | |
HOMEBREW_CXX: clang++ | |
CFLAGS: | |
CPPFLAGS: -I/usr/local/Cellar/gettext/0.18.3.2/include | |
MAKEFLAGS: -j2 | |
CMAKE_PREFIX_PATH: /usr/local/opt/readline:/usr/local/opt/gettext:/usr/local/opt/libffi:/usr/local | |
CMAKE_INCLUDE_PATH: /usr/include/libxml2:/opt/X11/include:/opt/X11/include/freetype2 | |
CMAKE_LIBRARY_PATH: /opt/X11/lib | |
PKG_CONFIG_PATH: /usr/local/opt/libtiff/lib/pkgconfig:/usr/local/opt/libpng/lib/pkgconfig:/usr/local/opt/freetype/lib/pkgconfig:/usr/local/opt/fontconfig/lib/pkgconfig:/usr/local/opt/pixman/lib/pkgconfig:/usr/local/opt/libffi/lib/pkgconfig:/usr/local/opt/glib/lib/pkgconfig:/usr/local/opt/cairo/lib/pkgconfig | |
PKG_CONFIG_LIBDIR: /usr/lib/pkgconfig:/usr/local/Library/ENV/pkgconfig/10.9:/opt/X11/lib/pkgconfig:/opt/X11/share/pkgconfig | |
ACLOCAL_PATH: /usr/local/opt/gettext/share/aclocal:/usr/local/share/aclocal:/opt/X11/share/aclocal | |
PATH: /usr/local/Library/ENV/4.3:/usr/local/opt/gettext/bin:/usr/local/opt/jpeg/bin:/usr/local/opt/libtiff/bin:/usr/local/opt/libpng/bin:/usr/local/opt/freetype/bin:/usr/local/opt/fontconfig/bin:/usr/local/opt/glib/bin:/usr/local/opt/cairo/bin:/usr/local/opt/gfortran/bin:/opt/X11/bin:/usr/bin:/bin:/usr/sbin:/sbin | |
Error: r 3.1.0 did not build | |
Logs: | |
/Users/Ben/Library/Logs/Homebrew/r/01.configure | |
/Users/Ben/Library/Logs/Homebrew/r/01.configure.cc | |
/Users/Ben/Library/Logs/Homebrew/r/config.log |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment