bmiles
/ bootstrap.css
Created
May 26, 2013 13:43
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| #titleBlock { | |
| background-color: rgb(26, 188, 156); | |
| width: 100%; | |
| height: 250px; | |
| padding: 15px; | |
| } |
bmiles
/ get_gists.rb
Created
July 6, 2013 15:35
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| require 'httparty' | |
| require 'json' | |
| require 'nokogiri' | |
| require 'open-uri' | |
| # | |
| # This is a shart script to get demo content to populate an inial set of 'science gists' | |
| # We started by trying to call the elife api directly, but it sucked balls | |
| # then we tried to use content negotiation, but that is also flakey |
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| ➜ ~ brew --config | |
| HOMEBREW_VERSION: 0.9.5 | |
| ORIGIN: https://github.com/Homebrew/homebrew.git | |
| HEAD: cdec40e4cab0768084c92d9732295a7e337c39be | |
| HOMEBREW_PREFIX: /usr/local | |
| HOMEBREW_CELLAR: /usr/local/Cellar | |
| CPU: dual-core 64-bit penryn | |
| OS X: 10.9.2-x86_64 | |
| Xcode: 5.1.1 | |
| CLT: 5.1.0.0.1.1396320587 |
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| checking build system type... x86_64-apple-darwin13.1.0 | |
| checking host system type... x86_64-apple-darwin13.1.0 | |
| loading site script './config.site' | |
| loading build-specific script './config.site' | |
| checking for pwd... /bin/pwd | |
| checking whether builddir is srcdir... yes | |
| checking for working aclocal... found | |
| checking for working autoconf... missing | |
| checking for working automake... found | |
| checking for working autoheader... missing |
bmiles
/ asc2csv.js
Created
May 21, 2014 15:44
small JS that finds and replaces tabs with a comma and renames the file to csv from asc.
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| var fs = require('fs'); | |
| var filePath = process.argv[2]; | |
| console.log(filePath); | |
| fs.readFile(filePath, function (err, data) { | |
| if (err) { | |
| return console.log(err); | |
| } | |
| var newFilePath = filePath.replace(/asc/g, 'csv'); |
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| b = a; #original image | |
| [L W] = size(a); % get dimensions of matrix | |
| % define bin factor | |
| BinW = 8; | |
| BinL = 8; | |
| % chaning the size of matrix b, to binL by ?? then adding 1 |
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| # Simple ggplot2 heatmap | |
| # with colorBrewer "spectral" palette | |
| doInstall <- FALSE # Change to FALSE if you don't want packages installed. | |
| toInstall <- c("ggplot2", "reshape2", "RColorBrewer") | |
| if(doInstall){install.packages(toInstall, repos = "http://cran.us.r-project.org")} | |
| lapply(toInstall, library, character.only = TRUE) | |
| require('rje') | |
| require('reshape2') | |
| # Generate a random matrix |
bmiles
/ Translocation bean plot.R
Created
July 30, 2014 14:50
R code to generate beanplot from translocation data.
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| library('beanplot') | |
| //load CSV data into data frame | |
| df <- data.frame(read.csv('./data/Max_Width.csv')) | |
| //beanplot amplitude column, add colours, add labels | |
| beanplot(df$Peak.Amplitude..nA., | |
| col=c('#bdc3c7','#1abc9c','#1abc9c'), | |
| show.names= TRUE, |
bmiles
/ index.html
Created
November 16, 2014 22:47
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| <!DOCTYPE html> | |
| <html lang="en"> | |
| <head> | |
| <meta charset="utf-8"> | |
| <meta http-equiv="X-UA-Compatible" content="IE=edge"> | |
| <meta name="viewport" content="width=device-width, initial-scale=1"> | |
| <style> div {background-color: #e0e0e0}</style> | |
| <title>Bootstrap 101 Template</title> | |
| <!-- Bootstrap --> |
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| library('colorout') | |
| setOutputColors256(normal = 70, number = 56, negnum = 56, date = 56, string = 179, const = 202, verbose = FALSE) | |
| library('dplyr') | |
| library('ggplot2') | |
| options(repos=structure(c(CRAN='http://cran.ma.imperial.ac.uk/'))) |
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