Embedding propagation installation instructions

install-ep.complete.sh

#! /usr/bin/env bash

export PATH=$HOME/local/bin:$PATH

export PYTHON_2_VERSION=2.7.13
export PYTHON_3_VERSION=3.6.1

# executables will be installed in $HOME/local/bin
mkdir -p $HOME/local/bin
cd $HOME/local/bin

# grab the requirements to ensure a complete python build
# this requires sudo
wget https://gist.github.com/bmmalone/f3bb86d248ebc8970f9b6868bd85516b/raw/install-python-prereqs
chmod +x install-python-prereqs
./install-python-prereqs

# Download, extract and install Python 2. This is necessary for creating the virtual environment
cd $HOME/install
wget https://www.python.org/ftp/python/$PYTHON_2_VERSION/Python-$PYTHON_2_VERSION.tgz
tar -xvf Python-$PYTHON_2_VERSION.tgz
cd Python-$PYTHON_2_VERSION
./configure --prefix=$HOME/local --with-ensurepip=install
make
make install
    
# Download, extract and install Python 3. This is necessary for the pipelines
cd $HOME/install
wget https://www.python.org/ftp/python/$PYTHON_3_VERSION/Python-$PYTHON_3_VERSION.tgz
tar -xvf Python-$PYTHON_3_VERSION.tgz
cd Python-$PYTHON_3_VERSION
./configure --prefix=$HOME/local --with-ensurepip=install
make
make install

# Upgrade both versions of pip. 
pip2 install --upgrade pip && pip3 install --upgrade pip wheel

# Install the virtual environment wrapper for Python 2. 
pip2 install --upgrade virtualenvwrapper

# now, pull the python projects
mkdir -p $HOME/python-projects
cd $HOME/python-projects

# make the virtual environment
mkvirtualenv ep -p $HOME/local/bin/python3

git clone [email protected]:mniepert/ep.git
cd ep

pip3 install -r requirements.txt

# this is only necessary if there is an attached GPU
pip3 install .[gpu]

# this is necessary for tests
pip3 install.[test]
nosetests tests/