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How do you send numpy arrays with metadata between processes using mpi?
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""" | |
Run with | |
mpiexec -n 11 mpi_goose_chase.py | |
""" | |
from __future__ import print_function | |
from mpi4py import MPI | |
import numpy as np | |
import time | |
comm = MPI.COMM_WORLD | |
rank = comm.Get_rank() | |
size = comm.Get_size() | |
#initializing variables. mpi4py requires that we pass numpy objects. | |
dims = (2048, 2048) | |
dtype = np.complex128 | |
n_reconstructions = 10 | |
# Create tag for each process, create memory buffer | |
tag = [rank + 0*1j] | |
recv_buffer = np.zeros(dims[0]*dims[1] + len(tag), dtype=dtype) | |
if rank == size - 1: | |
reconstruction_cube = np.zeros((n_reconstructions, dims[0], dims[1]), | |
dtype=dtype) | |
for i in range(0, size-1): | |
comm.Recv(recv_buffer, MPI.ANY_SOURCE) | |
process_tag = recv_buffer[:len(tag)] | |
process_image = recv_buffer[len(tag):].reshape(dims) | |
image_index = int(np.real(process_tag)) | |
reconstruction_cube[image_index, ...] = process_image | |
else: | |
# Generate science image | |
local_image = np.array(rank+np.zeros(dims) + np.zeros(dims)* 1j, dtype=dtype) | |
# Ravel, add tags to the beginning | |
local_tagged_image = np.concatenate([tag, local_image.ravel()]) | |
# all other process send their result | |
comm.Send(local_tagged_image, dest=size-1) | |
if rank == size-1: | |
print(reconstruction_cube) |
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