Qiime easyblock

$ cat qiime.py 
import os, shutil
from easybuild.apps.Application import Application
from easybuild.apps.Precompiled import Tarball
from easybuild.apps.Toolbox import PythonModuleSeparate
from easybuild.apps.Compiler import CMake
from easybuild.buildsoft.fileTools import convertName, runrun, runqanda
from distutils.version import LooseVersion

# PythonPackage should do here (not verified)
class QIIME(PythonModuleSeparate):
    def test(self):
        if self.getCfg('testinstall'):
            testinstalldir = os.path.join(self.builddir, "mytemporarytestinstalldir")
            qiimeconfigfile = os.path.join(self.builddir, "qiime_config")
            qiimeconfigtxt = "qiime_scripts_dir    %s" % testinstalldir

            try:
                f = open(qiimeconfigfile, 'w')
                f.write(qiimeconfigtxt)
                f.close()
                self.log.debug("Successfully created test qiime_config file at: %s" % qiimeconfigfile)
            except Exception, err:
                self.log.error("Failed to create test qiime_config file at: %s (%s)" % (qiimeconfigfile, err))

            extraexport = "export QIIME_CONFIG_FP=%s && " % qiimeconfigfile

            extrapath = ""

            """
            Install in test directory and export PYTHONPATH
            """
            try:
                os.makedirs(testinstalldir)
            except:
                self.log.exception("Creating testinstalldir %s failed" % testinstalldir)

            ppath = "%s/reallib" % testinstalldir
            cmd = "python setup.py install --install-scripts=%s --install-purelib=%s %s" % (testinstalldir, ppath, self.getCfg('installopts'))
            runrun(cmd, logall=True, simple=True)

            if os.environ.has_key('PYTHONPATH'):
                extrapath = "export PYTHONPATH=%s:%s && " % (ppath, os.environ['PYTHONPATH'])
            else:
                extrapath = "export PYTHONPATH=%s && " % ppath

        if self.getCfg('runtest'):
            cmd = "%s%s%s" % (extraexport, extrapath, self.getCfg('runtest'))

            runrun(cmd, logall=True, simple=True)

    def makeModuleExtra(self):
        """Overwritten from PythonModuleSeparate to add extra txt"""
        txt = PythonModuleSeparate.makeModuleExtra(self)

        scriptsdir = os.path.join(self.installdir, 'bin')
        qiimeconfigfile = os.path.join(self.installdir, "qiime_config")
        qiimeconfigtxt = "qiime_scripts_dir    %s" % scriptsdir

        try:
            f = open(qiimeconfigfile, 'w')
            f.write(qiimeconfigtxt)
            f.close()
            self.log.debug("Successfully created qiime_config file at: %s" % qiimeconfigfile)
        except Exception, err:
            self.log.error("Failed to create qiime_config file at: %s (%s)" % (qiimeconfigfile, err))

        return txt + "prepend-path\tQIIME_CONFIG_FP\t\t%s\n" % qiimeconfigfile

easyconfig:

name='QIIME'
version='1.1.0'

homepage='http://qiime.sourceforge.net/'
description="QIIME (canonically pronounced 'Chime') is a pipeline for performing microbial community analysis that integrates many third party tools which have become standard in the field."

toolkit={'name':'gimkl','version':'0.5.1'}

toolkitopts={'pic':True,'opt':True,'optarch':True}

namesource=name[:1]+name[1:].lower()
sources=['%s-%s.tar.gz'%(namesource,version)]

dependencies=[['Python','2.7'],['PyNAST','1.1'],['UCLUST','1.1.579q_i86linux64','','dummy'],['BLAST','2.2.22-x64-linux','','dummy']]
dependencies+=[['FastTree','2.1.3','-omp'],['CD-HIT','2009-0427','-omp'],['Java','1.6.0_20','','dummy'],['RDP-Classifier','2.2','','dummy']]
dependencies+=[['Denoiser','0.851']]

importdeps='cogent, numpy, matplotlib, pynast'

testinstall=True
runtest="cd tests && python all_tests.py"

does this work?