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Created May 18, 2014 08:57
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EasyBuild test report for easyconfigs PR #594
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easybuild_test_report_easyconfigs_pr594_20145718-UTC-08-57-21.md

Test report for easybuilders/easybuild-easyconfigs#594

Test result

Build succeeded for 14 out of 16 (15 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

  • SUCCESS Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb
  • SUCCESS GMAP-2013-11-27-ictce-5.3.0.eb
  • SUCCESS Eigen-3.2.0-ictce-5.5.0.eb
  • SUCCESS Boost-1.55.0-ictce-5.5.0-Python-2.7.6.eb
  • SUCCESS HTSeq-0.5.4p5-goolf-1.4.10-Python-2.7.3.eb
  • SUCCESS Bowtie2-2.1.0-ictce-5.5.0.eb
  • SUCCESS GMAP-2013-11-27-goolf-1.4.10.eb
  • SUCCESS Cufflinks-2.0.2-ictce-5.3.0.eb
  • SUCCESS HTSeq-0.5.4p5-ictce-5.5.0-Python-2.7.6.eb
  • SUCCESS HTSeq-0.5.4p5-ictce-5.3.0-Python-2.7.3.eb
  • SUCCESS GMAP-2013-11-27-ictce-5.5.0.eb
  • SUCCESS Cufflinks-2.0.2-goolf-1.4.10.eb
  • SUCCESS Cufflinks-2.1.1-ictce-5.5.0.eb
  • SUCCESS TopHat-2.0.10-ictce-5.5.0.eb
  • FAIL (build issue) PLINK-1.07-ictce-5.3.0.eb (partial log available at https://gist.github.com/7f058bab40814d72cc75)
  • FAIL (build issue) HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb (partial log available at https://gist.github.com/d9b5814c8723002d6dd3)

Time info

  • start: Sun, 18 May 2014 08:14:02 +0000 (UTC)
  • end: Sun, 18 May 2014 08:57:20 +0000 (UTC)

EasyBuild info

  • easybuild-framework version: 1.13.0dev
  • easybuild-easyblocks version: 1.13.0dev
  • command line:
eb --from-pr 594 --upload-test-report --robot --force --github-user=boegel
  • full configuration (includes defaults):
--buildpath=/user/home/gent/vsc400/vsc40023/.local/easybuild/build
--config=/user/scratchdelcatty/gent/gvo000/gvo00002/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_framework-1.13.0dev-py2.6.egg/easybuild/easybuild_config.py
--disable-allow-modules-tool-mismatch
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-debug
--disable-dry-run
--disable-dry-run-short
--disable-experimental
--disable-ignore-osdeps
--disable-info
--disable-job
--disable-list-toolchains
--disable-logtostdout
--disable-pretend
--disable-quiet
--disable-recursive-module-unload
--disable-regtest
--disable-sequential
--disable-set-gid-bit
--disable-show-default-moduleclasses
--disable-skip
--disable-skip-test-cases
--disable-sticky-bit
--force
--from-pr=594
--github-user=boegel
--ignore-dirs=.git,.svn
--installpath=/user/home/gent/vsc400/vsc40023/.local/easybuild
--logfile-format=easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log
--module-naming-scheme=EasyBuildModuleNamingScheme
--moduleclasses=bio,chem,data,devel,ide,lib,mpi,perf,system,tools
--modules-tool=EnvironmentModulesC
--oldstyleconfig
--repository=FileRepository
--repositorypath=/user/home/gent/vsc400/vsc40023/.local/easybuild/ebfiles_repo
--robot=/user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-1.13.0.0dev-py2.6.egg/easybuild/easyconfigs
--sourcepath=/user/home/gent/vsc400/vsc40023/.local/easybuild/sources
--strict=warn
--subdir-modules=modules
--subdir-software=software
--tmp-logdir=/tmp
--upload-test-report

System info

  • core count: 16
  • cpu model: Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz
  • cpu speed: 2599.999
  • cpu vendor: Intel
  • gcc version: Using built-in specs.; Target: x86_64-redhat-linux; Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux; Thread model: posix; gcc version 4.4.7 20120313 (Red Hat 4.4.7-4) (GCC) ;
  • glibc version: 2.12
  • hostname: node2153.delcatty.os
  • kernel name: Linux
  • os name: SL
  • os type: Linux
  • os version: 6.5
  • platform name: x86_64-unknown-linux
  • python version: 2.6.6 (r266:84292, Jan 22 2014, 05:06:49) ; [GCC 4.4.7 20120313 (Red Hat 4.4.7-3)]
  • system gcc path: /usr/bin/gcc
  • system python path: /usr/bin/python

List of loaded modules

  • cluster/delcatty

Environment

EASYBUILDBUILDPATH = /tmp/vsc40023/easybuild_build
EASYBUILDPREFIX = /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge
EASYBUILDSOURCEPATH = /user/data/gent/vsc400/vsc40023/EasyBuild/sources:/apps/gent/source:/nfsmuk/apps/gent/source/
G_BROKEN_FILENAMES = 1
HISTCONTROL = ignoredups
HISTSIZE = 1000
HOME = /user/home/gent/vsc400/vsc40023
HOSTNAME = node2153.delcatty.os
LANG = en_US.utf8
LC_ALL = en_US.utf8
LC_CTYPE = UTF-8
LESSOPEN = |/usr/bin/lesspipe.sh %s
LOADEDMODULES = cluster/delcatty
LOGNAME = vsc40023
LS_COLORS = 
MAIL = /var/spool/mail/vsc40023
MODULEPATH = /etc/modulefiles/vsc:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all
MODULESHOME = /usr/share/Modules
PATH = /user/home/gent/vsc400/vsc40023/lmod/5.1.5/libexec:/user/home/gent/vsc400/vsc40023/bin:/user/home/gent/vsc400/vsc40023/lmod/5.1.5/libexec:/user/home/gent/vsc400/vsc40023/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/ibutils/bin:/user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/bin:/user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/bin:/user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/bin:/user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/bin
PBS_DEFAULT = master15.delcatty.gent.vsc
PWD = /user/home/gent/vsc400/vsc40023
PYTHONPATH = /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages:/user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib64/python2.6/site-packages:/user/home/gent/vsc400/vsc40023/.local/lib/python2.6/site-packages:/user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/lib/python2.6/site-packages:/user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/lib64/python2.6/site-packages
SHELL = /bin/bash
SHLVL = 3
SSH_CLIENT = 172.24.13.2 57444 22
SSH_CONNECTION = 172.24.13.2 57444 172.24.12.153 22
SSH_TTY = /dev/pts/0
STY = 109877.pts-0.node2153
TERM = screen
TERMCAP = SC|screen|VT 100/ANSI X3.64 virtual terminal:\
	:DO=\E[%dB:LE=\E[%dD:RI=\E[%dC:UP=\E[%dA:bs:bt=\E[Z:\
	:cd=\E[J:ce=\E[K:cl=\E[H\E[J:cm=\E[%i%d;%dH:ct=\E[3g:\
	:do=^J:nd=\E[C:pt:rc=\E8:rs=\Ec:sc=\E7:st=\EH:up=\EM:\
	:le=^H:bl=^G:cr=^M:it#8:ho=\E[H:nw=\EE:ta=^I:is=\E)0:\
	:li#45:co#181:am:xn:xv:LP:sr=\EM:al=\E[L:AL=\E[%dL:\
	:cs=\E[%i%d;%dr:dl=\E[M:DL=\E[%dM:dc=\E[P:DC=\E[%dP:\
	:im=\E[4h:ei=\E[4l:mi:IC=\E[%d@:ks=\E[?1h\E=:\
	:ke=\E[?1l\E>:vi=\E[?25l:ve=\E[34h\E[?25h:vs=\E[34l:\
	:ti=\E[?1049h:te=\E[?1049l:us=\E[4m:ue=\E[24m:so=\E[3m:\
	:se=\E[23m:mb=\E[5m:md=\E[1m:mr=\E[7m:me=\E[m:ms:\
	:Co#8:pa#64:AF=\E[3%dm:AB=\E[4%dm:op=\E[39;49m:AX:\
	:vb=\Eg:G0:as=\E(0:ae=\E(B:\
	:ac=\140\140aaffggjjkkllmmnnooppqqrrssttuuvvwwxxyyzz{{||}}~~..--++,,hhII00:\
	:po=\E[5i:pf=\E[4i:k0=\E[10~:k1=\EOP:k2=\EOQ:k3=\EOR:\
	:k4=\EOS:k5=\E[15~:k6=\E[17~:k7=\E[18~:k8=\E[19~:\
	:k9=\E[20~:k;=\E[21~:F1=\E[23~:F2=\E[24~:F3=\E[1;2P:\
	:F4=\E[1;2Q:F5=\E[1;2R:F6=\E[1;2S:F7=\E[15;2~:\
	:F8=\E[17;2~:F9=\E[18;2~:FA=\E[19;2~:kb=�:K2=\EOE:\
	:kB=\E[Z:kF=\E[1;2B:kR=\E[1;2A:*4=\E[3;2~:*7=\E[1;2F:\
	:#2=\E[1;2H:#3=\E[2;2~:#4=\E[1;2D:%c=\E[6;2~:%e=\E[5;2~:\
	:%i=\E[1;2C:kh=\E[1~:@1=\E[1~:kH=\E[4~:@7=\E[4~:\
	:kN=\E[6~:kP=\E[5~:kI=\E[2~:kD=\E[3~:ku=\EOA:kd=\EOB:\
	:kr=\EOC:kl=\EOD:km:
USER = vsc40023
VSCPROFILELOADED = 1
VSC_ARCH_LOCAL = sandybridge
VSC_DATA = /user/data/gent/vsc400/vsc40023
VSC_DATA_VO = /user/data/gent/gvo000/gvo00002
VSC_DATA_VO_USER = /user/data/gent/gvo000/gvo00002/vsc40023
VSC_HOME = /user/home/gent/vsc400/vsc40023
VSC_INSTITUTE = gent
VSC_INSTITUTE_CLUSTER = delcatty
VSC_INSTITUTE_LOCAL = gent
VSC_OS_LOCAL = SL6
VSC_SCRATCH = /user/scratch/gent/vsc400/vsc40023
VSC_SCRATCHGULPIN = /user/scratchgulpin/gent/vsc400/vsc40023
VSC_SCRATCH_CLUSTER = /user/scratchdelcatty/gent/gvo000/gvo00002/vsc40023
VSC_SCRATCH_DELCATTY = /user/scratchdelcatty/gent/vsc400/vsc40023
VSC_SCRATCH_DELCATTY_VO = /user/scratchdelcatty/gent/gvo000/gvo00002
VSC_SCRATCH_DELCATTY_VO_USER = /user/scratchdelcatty/gent/gvo000/gvo00002/vsc40023
VSC_SCRATCH_GENGAR = /user/scratchgengar/gent/vsc400/vsc40023
VSC_SCRATCH_GENGAR_VO = /user/scratchgengar/gent/gvo000/gvo00002
VSC_SCRATCH_GENGAR_VO_USER = /user/scratchgengar/gent/gvo000/gvo00002/vsc40023
VSC_SCRATCH_GULPIN = /user/scratchgulpin/gent/vsc400/vsc40023
VSC_SCRATCH_GULPIN_VO = /user/scratchgulpin/gent/gvo000/gvo00002
VSC_SCRATCH_GULPIN_VO_USER = /user/scratchgulpin/gent/gvo000/gvo00002/vsc40023
VSC_SCRATCH_NODE = /local
VSC_SCRATCH_SITE = /user/scratch/gent/vsc400/vsc40023
VSC_SCRATCH_VO = /user/scratch/gent/gvo000/gvo00002
VSC_SCRATCH_VO_USER = /user/scratch/gent/gvo000/gvo00002/vsc40023
VSC_VO = gvo00002
WINDOW = 0
_ = /usr/bin/python
_LMFILES_ = /etc/modulefiles/vsc/cluster/delcatty
module = () {  eval `/usr/bin/modulecmd bash $*`
}
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