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August 7, 2018 19:44
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treepl (brewsci/bio/treepl) on macOS 10.13.6 - Homebrew build logs
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| Homebrew build logs for brewsci/bio/treepl on macOS 10.13.6 | |
| Build date: 2018-08-07 14:05:22 |
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| HOMEBREW_VERSION: 1.7.1-162-g15c62df | |
| ORIGIN: https://github.com/Homebrew/brew | |
| HEAD: 15c62dfd017771cfd3ba5e57687bc5b1d2ed2487 | |
| Last commit: 4 hours ago | |
| Core tap ORIGIN: https://github.com/Homebrew/homebrew-core | |
| Core tap HEAD: ca6f92d919730258dfef2de4e324a270468b8c75 | |
| Core tap last commit: 3 hours ago | |
| HOMEBREW_PREFIX: /usr/local | |
| HOMEBREW_DEV_CMD_RUN: 1 | |
| HOMEBREW_GITHUB_API_TOKEN: set | |
| CPU: octa-core 64-bit kabylake | |
| Homebrew Ruby: 2.3.7 => /usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/2.3.7/bin/ruby | |
| Clang: 9.0 build 900 | |
| Git: 2.18.0 => /usr/local/bin/git | |
| Curl: 7.54.0 => /usr/bin/curl | |
| Java: 1.8.0_121 | |
| macOS: 10.13.6-x86_64 | |
| CLT: N/A | |
| Xcode: 9.2 | |
| XQuartz: 2.7.11 => /opt/X11 |
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| Please note that these warnings are just used to help the Homebrew maintainers | |
| with debugging if you file an issue. If everything you use Homebrew for is | |
| working fine: please don't worry or file an issue; just ignore this. Thanks! | |
| Warning: Unbrewed dylibs were found in /usr/local/lib. | |
| If you didn't put them there on purpose they could cause problems when | |
| building Homebrew formulae, and may need to be deleted. | |
| Unexpected dylibs: | |
| /usr/local/lib/libtcl8.6.dylib | |
| /usr/local/lib/libtk8.6.dylib | |
| /usr/local/lib/libwkhtmltox.0.12.4.dylib | |
| Warning: Unbrewed header files were found in /usr/local/include. | |
| If you didn't put them there on purpose they could cause problems when | |
| building Homebrew formulae, and may need to be deleted. | |
| Unexpected header files: | |
| /usr/local/include/fakemysql.h | |
| /usr/local/include/fakepq.h | |
| /usr/local/include/fakesql.h | |
| /usr/local/include/itcl.h | |
| /usr/local/include/itcl2TclOO.h | |
| /usr/local/include/itclDecls.h | |
| /usr/local/include/itclInt.h | |
| /usr/local/include/itclIntDecls.h | |
| /usr/local/include/itclMigrate2TclCore.h | |
| /usr/local/include/itclTclIntStubsFcn.h | |
| /usr/local/include/mysqlStubs.h | |
| /usr/local/include/odbcStubs.h | |
| /usr/local/include/pqStubs.h | |
| /usr/local/include/tcl.h | |
| /usr/local/include/tclDecls.h | |
| /usr/local/include/tclOO.h | |
| /usr/local/include/tclOODecls.h | |
| /usr/local/include/tclPlatDecls.h | |
| /usr/local/include/tclThread.h | |
| /usr/local/include/tclTomMath.h | |
| /usr/local/include/tclTomMathDecls.h | |
| /usr/local/include/tdbc.h | |
| /usr/local/include/tdbcDecls.h | |
| /usr/local/include/tdbcInt.h | |
| /usr/local/include/tk.h | |
| /usr/local/include/tkDecls.h | |
| /usr/local/include/tkPlatDecls.h | |
| /usr/local/include/wkhtmltox/image.h | |
| /usr/local/include/wkhtmltox/pdf.h | |
| Warning: Unbrewed .pc files were found in /usr/local/lib/pkgconfig. | |
| If you didn't put them there on purpose they could cause problems when | |
| building Homebrew formulae, and may need to be deleted. | |
| Unexpected .pc files: | |
| /usr/local/lib/pkgconfig/tcl.pc | |
| /usr/local/lib/pkgconfig/tk.pc | |
| Warning: Unbrewed static libraries were found in /usr/local/lib. | |
| If you didn't put them there on purpose they could cause problems when | |
| building Homebrew formulae, and may need to be deleted. | |
| Unexpected static libraries: | |
| /usr/local/lib/libtclstub8.6.a | |
| /usr/local/lib/libtkstub8.6.a | |
| Warning: You have unlinked kegs in your Cellar | |
| Leaving kegs unlinked can lead to build-trouble and cause brews that depend on | |
| those kegs to fail to run properly once built. Run `brew link` on these: | |
| r | |
| Warning: Your Xcode (9.2) is outdated. | |
| Please update to Xcode 9.4 (or delete it). | |
| Xcode can be updated from the App Store. | |
| Warning: Use nlopt instead of deprecated homebrew/science/nlopt | |
| Warning: Use beagle instead of deprecated brewsci/bio/beagle | |
| Warning: Some installed formulae are missing dependencies. | |
| You should `brew install` the missing dependencies: | |
| brew install beagle | |
| Run `brew missing` for more details. |
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| Formula: treepl | |
| Tap: brewsci/bio | |
| Path: /usr/local/Homebrew/Library/Taps/brewsci/homebrew-bio/Formula/treepl.rb |
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| 2018-08-07 14:05:22 -0400 | |
| /usr/local/Cellar/treepl/2017.05.23/bin/treePL | |
| clock.cppr8s | |
| dyld: Library not loaded: /usr/local/opt/gcc/lib/gcc/7/libgomp.1.dylib | |
| Referenced from: /usr/local/Cellar/treepl/2017.05.23/bin/treePL | |
| Reason: image not found | |
| HOMEBREW_VERSION: 1.7.1 | |
| ORIGIN: https://github.com/Homebrew/brew | |
| HEAD: d6a245c05110c240e680da594c2cc6038998b82e | |
| Last commit: 2 weeks ago | |
| Core tap ORIGIN: https://github.com/Homebrew/homebrew-core | |
| Core tap HEAD: ca6f92d919730258dfef2de4e324a270468b8c75 | |
| Core tap last commit: 83 minutes ago | |
| HOMEBREW_PREFIX: /usr/local | |
| HOMEBREW_CACHE: /Users/bomeara/Library/Caches/Homebrew | |
| CPU: octa-core 64-bit kabylake | |
| Homebrew Ruby: 2.3.7 => /usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/2.3.7/bin/ruby | |
| Clang: 9.0 build 900 | |
| Git: 2.17.1 => /usr/local/bin/git | |
| Curl: 7.60.0 => /usr/local/opt/curl/bin/curl | |
| Java: 1.8.0_121 | |
| macOS: 10.13.5-x86_64 | |
| CLT: N/A | |
| Xcode: 9.2 | |
| XQuartz: 2.7.11 => /opt/X11 | |
| CC: /usr/bin/clang | |
| CXX: /usr/bin/clang++ | |
| OBJC: /usr/bin/clang | |
| OBJCXX: /usr/bin/clang++ | |
| CFLAGS: -Os -w -pipe -march=native -mmacosx-version-min=10.13 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk | |
| CXXFLAGS: -Os -w -pipe -march=native -mmacosx-version-min=10.13 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk | |
| CPPFLAGS: -F/usr/local/Frameworks -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk | |
| LDFLAGS: -L/usr/local/lib -F/usr/local/Frameworks -Wl,-headerpad_max_install_names -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk | |
| SDKROOT: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk | |
| MAKEFLAGS: -j8 | |
| CMAKE_PREFIX_PATH: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk/usr | |
| CMAKE_FRAMEWORK_PATH: /usr/local/Frameworks:/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk/System/Library/Frameworks | |
| PKG_CONFIG_LIBDIR: /usr/local/lib/pkgconfig:/usr/local/share/pkgconfig:/usr/local/Homebrew/Library/Homebrew/os/mac/pkgconfig/10.13:/usr/lib/pkgconfig | |
| PATH: /Library/TeX/texbin:/opt/X11/bin:/usr/local/bin:/usr/local/sbin:/usr/local/opt/curl/bin:/usr/local/opt/sqlite/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/Homebrew/Library/Homebrew/shims/scm:/Applications/Xcode.app/Contents/Developer/usr/bin:/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin | |
| CPATH: /usr/local/include:/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk/usr/include |
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