Brian Osborne bosborne

bosborne / make_dr_seqs.py

Last active January 18, 2022 17:23

Use `mash` k-mer analysis to create a decreased redundancy sequence protein sequence file

	#!/usr/bin/env python3

	import argparse
	import os
	import subprocess
	import sys
	from shutil import which
	import tempfile
	from collections import defaultdict
	from Bio import SeqIO

bosborne / build_neo4j_db.py

Last active January 28, 2022 14:49

Make a Neo4J database for a collection of wines using py2neo

	#!/usr/bin/env python3
	'''
	Use py2neo to create a Neo4J Wine database.
	Data is stored in YAML files like this:

	region: Cotes du Rhone
	country: France
	comment: Mostly Grenache. Thin, sour, unpleasant.
	winemaker: Joseph Sabon
	year: 2006

bosborne / query-nih-reporter.py

Last active December 12, 2023 02:08

Python code to query the NIH Reporter API

	#!/usr/bin/env python3

	import requests
	import argparse
	import re
	from collections import defaultdict

	'''
	Query the v2 NIH Reporter API