bryan-lunt

#%Module1.0#####################################################################
##
## privatemodules modulefile
##
## An alternative to use.own that lets you have a per-cluster private module directory,
## and automatically loads the appropriate one.
##
## Expects to be installed in ~/.privatemodules/base/privatemodules
##
proc ModulesHelp { } {

bryan-lunt

diff --git a/src/jnet.c b/src/jnet.c
index e0cd13e..81df7a9 100644
--- a/src/jnet.c
+++ b/src/jnet.c
@@ -1144,7 +1144,7 @@ void dopred(alldata *data[],int count,int printsty)
   
   
   if (nohmm == 1 && nopsi == 1){
-    fprintf (stderr, "\nWARNING!: Only using the sequence alignment\n          Accuracy will average 71.6%\n\n");
+    fprintf (stderr, "\nWARNING!: Only using the sequence alignment\n          Accuracy will average 71.6%%\n\n");

bryan-lunt

#!/usr/bin/env python
'''
Created on Jan 18, 2013

@author: lunt
'''
import sys

import Bio.pairwise2 as PW

bryan-lunt

'''
Created on Jun 1, 2012

@author: lunt


SOME CODE TAKEN FROM: http://stackoverflow.com/questions/3529666/matplotlib-matshow-labels
'''

import pylab

bryan-lunt

'''
Created on Jun 29, 2010

@author: lunt@ctbp.ucsd.edu
'''

from Bio.Seq import Seq
import Bio.PDB as PDB
import Bio.PDB.Polypeptide as PP
from itertools import izip, count