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@veekaybee
veekaybee / normcore-llm.md
Last active April 20, 2025 11:25
Normcore LLM Reads

Anti-hype LLM reading list

Goals: Add links that are reasonable and good explanations of how stuff works. No hype and no vendor content if possible. Practical first-hand accounts of models in prod eagerly sought.

Foundational Concepts

Screenshot 2023-12-18 at 10 40 27 PM

Pre-Transformer Models

@andy-thomason
andy-thomason / Genomics_A_Programmers_Guide.md
Created May 14, 2019 13:32
Genomics a programmers introduction

Genomics - A programmer's guide.

Andy Thomason is a Senior Programmer at Genomics PLC. He has been witing graphics systems, games and compilers since the '70s and specialises in code performance.

https://www.genomicsplc.com

@jackkamm
jackkamm / bam2consensus.py
Last active November 23, 2023 13:03
Generate consensus fasta from bam file
from collections import Counter, OrderedDict
import pysam
from Bio import SeqIO
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord
def bam2consensus(
ref_fname, bam_fname, ac_threshold, af_threshold, out_fname):
consensus = OrderedDict()
@evandavis
evandavis / CoffeeScript.plist
Created July 31, 2012 19:40 — forked from pmuellr/gist:1004413
BBEdit Language Module for CoffeeScript
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE plist PUBLIC "-//Apple//DTD PLIST 1.0//EN" "http://www.apple.com/DTDs/PropertyList-1.0.dtd">
<!--
BBEdit Language Module for CoffeeScript
Put this file in
~/Library/Application Support/BBEdit/Language Modules
or equivalent.
Based off of the examples shipped in the BBEdit SDK.
@simX
simX / hidpi.txt
Created July 28, 2012 04:58
Enable HiDPI mode in Mountain Lion w/o Quartz Debug
sudo defaults write /Library/Preferences/com.apple.windowserver DisplayResolutionEnabled -bool YES;
sudo defaults delete /Library/Preferences/com.apple.windowserver DisplayResolutionDisabled;
// by the way, you need to logout and log back in for this to take effect. Or at least that's what
// Quartz Debug says. Who knows, maybe it's lying?
// P.S. Go to [Apple menu --> System Preferences --> Displays --> Display --> Scaled] after logging
// back in, and you'll see a bunch of "HiDPI" resolutions in the list to choose from.
@dalethedeveloper
dalethedeveloper / gist:1846552
Created February 16, 2012 17:18
Techniques for Anti-Aliasing @font-face on Windows

#Techniques for Anti-Aliasing @font-face on Windows

It all started with an email from a client: Do these fonts look funky to you? The title is prickly.

The font in question was Port Lligat Sans from Google Web Fonts.

The "prickly" is aliasing caused by lack of hinting

<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE plist PUBLIC "-//Apple//DTD PLIST 1.0//EN" "http://www.apple.com/DTDs/PropertyList-1.0.dtd">
<plist version="1.0">
<dict>
<key>Ansi 0 Color</key>
<dict>
<key>Blue Component</key>
<real>0.0</real>
<key>Green Component</key>
<real>0.0</real>
@lamnk
lamnk / updatevim.rb
Last active September 27, 2015 21:28
Use Pathogen to update vim plugins
#!/usr/bin/env ruby
# runtime bundle/vim-pathogen/autoload/pathogen.vim
# Insert the above line to .vimrc for pathogen to work
# Pathongen is included in this script so that it will be auto-updated
# Sparkup need manual treatment
# git://github.com/kogakure/vim-sparkup.git
# https://bitbucket.org/ns9tks/vim-fuzzyfinder/
# https://bitbucket.org/ns9tks/vim-autocomplpop/
@netj
netj / MacOSXDefaultFontFallbacksChanger.command
Created July 22, 2011 11:53
맥의 기본 한글 글꼴을 바꿔주는 스크립트 - A script for changing Mac OS X's default font fallbacks
#!/usr/bin/env bash
# A script for changing Mac OS X's default fonts
# Author: Jaeho Shin <[email protected]>
# Created: 2011-07-22
### MacOSXDefaultFontFallbacksChanger #########################################
## Mac OS X 기본 글꼴 설정 변경 도구 – 1.2.1 (2012-08)
## http://netj.github.com/MacOSXDefaultFontFallbacksChanger
###############################################################################
@alexpgates
alexpgates / Use DayOne Journal data with php
Created April 6, 2011 20:05
Use DayOne data with php.
<?php
// DayOne is a nice little journaling app for iOS / Mac (available via App Store).
// This code requires php_class_lib available here: https://github.com/jsjohnst/php_class_lib
include('php_class_lib/classes/parsers/plist/PlistParser.inc');
// grab filenames for all of your journal entries
$entries = array();
if ($handle = opendir('/path/to/your/Journal.dayone/entries')) {