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[scikit-learn/sklearn, pandas] Plot percent of variance explained for KMeans (Elbow Method)
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import pandas as pd | |
import matplotlib.pyplot as plt | |
import seaborn | |
from sklearn.cluster import KMeans | |
import numpy as np | |
from scipy.spatial.distance import cdist, pdist | |
def elbow(df, n): | |
kMeansVar = [KMeans(n_clusters=k).fit(df.values) for k in range(1, n)] | |
centroids = [X.cluster_centers_ for X in kMeansVar] | |
k_euclid = [cdist(df.values, cent) for cent in centroids] | |
dist = [np.min(ke, axis=1) for ke in k_euclid] | |
wcss = [sum(d**2) for d in dist] | |
tss = sum(pdist(df.values)**2)/df.values.shape[0] | |
bss = tss - wcss | |
plt.plot(bss) | |
plt.show() |
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score function in
from sklearn.cluster import KMeans
gives the same graph pattern