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PheKnowVec Cohort Query: https://github.com/callahantiff/PheKnowVec/wiki/ADHD
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WITH age_criteria_1 AS ( | |
SELECT co.person_id, cohort.standard_code_set AS code_set | |
FROM | |
{database}.person p, | |
{database}.condition_occurrence co, | |
{database}.ADHD_COHORT_VARS cohort | |
WHERE p.person_id = co.person_id | |
AND co.condition_concept_id = CAST(cohort.standard_concept_id AS int64) | |
AND cohort.phenotype_definition_number = 1 | |
AND cohort.standard_code_set = {code_set_group} | |
GROUP BY | |
co.person_id, p.birth_datetime, cohort.standard_code_set | |
HAVING | |
DATETIME_DIFF(DATETIME(MIN(co.condition_start_datetime)), DATETIME(p.birth_datetime), DAY) >= 1460 | |
), | |
dx_case_inclusion_criteria_1 AS ( | |
SELECT co.person_id, cohort.standard_code_set AS code_set | |
FROM | |
{database}.condition_occurrence co, | |
{database}.ADHD_COHORT_VARS cohort, | |
{database}.visit_occurrence v | |
WHERE | |
co.visit_occurrence_id = v.visit_occurrence_id | |
AND co.condition_concept_id = CAST(cohort.standard_concept_id AS int64) | |
AND v.admitting_source_concept_id IN (44814672, 8870, 38004279, 8863, 8546) | |
AND cohort.phenotype_definition_number = 1 | |
AND cohort.standard_code_set = {code_set_group} | |
GROUP BY | |
co.person_id, cohort.standard_code_set | |
HAVING | |
COUNT(DISTINCT co.condition_concept_id) >= 1 | |
AND COUNT(DISTINCT v.visit_start_date) >= 1 | |
), | |
rx_case_inclusion_criteria_1 AS ( | |
SELECT de.person_id, cohort.standard_code_set AS code_set | |
FROM | |
{database}.drug_exposure de, | |
{database}.ADHD_COHORT_VARS cohort | |
WHERE | |
de.drug_concept_id = CAST(cohort.standard_concept_id AS int64) | |
AND cohort.phenotype_definition_number = 2 | |
AND cohort.standard_code_set = {code_set_group} | |
GROUP BY | |
de.person_id, cohort.standard_code_set | |
HAVING | |
COUNT(DISTINCT de.drug_concept_id) >= 1 | |
), | |
dx_case_exclusion_criteria_1 AS ( | |
SELECT co.person_id, cohort.standard_code_set AS code_set | |
FROM | |
{database}.condition_occurrence co, | |
{database}.ADHD_COHORT_VARS cohort | |
WHERE | |
co.condition_concept_id = CAST(cohort.standard_concept_id AS int64) | |
AND cohort.phenotype_definition_number = 3 | |
AND cohort.standard_code_set = {code_set_group} | |
GROUP BY co.person_id, cohort.standard_code_set | |
HAVING | |
COUNT(DISTINCT co.condition_concept_id) >= 1 | |
), | |
dx_case_inclusion_criteria_2 AS ( | |
SELECT co.person_id, cohort.standard_code_set AS code_set | |
FROM | |
{database}.condition_occurrence co, | |
{database}.ADHD_COHORT_VARS cohort, | |
{database}.visit_occurrence v | |
WHERE | |
co.visit_occurrence_id = v.visit_occurrence_id | |
AND co.condition_concept_id = CAST(cohort.standard_concept_id AS int64) | |
AND v.admitting_source_concept_id IN (44814672, 8870, 38004279, 8863, 8546) | |
AND cohort.phenotype_definition_number = 1 | |
AND cohort.standard_code_set = {code_set_group} | |
GROUP BY | |
co.person_id, cohort.standard_code_set | |
HAVING | |
COUNT(DISTINCT co.condition_concept_id) >= 1 | |
AND COUNT(DISTINCT v.visit_start_date) >= 2 | |
), | |
age_criteria_2 AS ( | |
SELECT co.person_id, {code_set_group} AS code_set | |
FROM | |
{database}.person p, | |
{database}.condition_occurrence co | |
WHERE p.person_id = co.person_id | |
GROUP BY | |
co.person_id, p.birth_datetime | |
HAVING | |
DATETIME_DIFF(DATETIME(MIN(co.condition_start_datetime)), DATETIME(p.birth_datetime), DAY) >= 1460 | |
), | |
visit_criteria_1 AS ( | |
SELECT v.person_id, {code_set_group} AS code_set | |
FROM | |
{database}.visit_occurrence v | |
GROUP BY | |
v.person_id, v.visit_end_datetime | |
HAVING | |
DATETIME(visit_end_datetime) >= DATETIME_ADD((SELECT DATETIME(MAX(visit_end_datetime)) FROM {database}.visit_occurrence), INTERVAL -5 YEAR) | |
AND COUNT(DISTINCT v.visit_start_date) >= 2 | |
), | |
rx_control_exclusion_criteria_1 AS ( | |
SELECT de.person_id, cohort.standard_code_set AS code_set | |
FROM | |
{database}.drug_exposure de, | |
{database}.ADHD_COHORT_VARS cohort | |
WHERE | |
de.drug_concept_id = CAST(cohort.standard_concept_id AS int64) | |
AND cohort.phenotype_definition_number = 4 | |
AND cohort.standard_code_set = {code_set_group} | |
GROUP BY de.person_id, cohort.standard_code_set | |
HAVING | |
COUNT(DISTINCT de.drug_concept_id) >= 1 | |
), | |
dx_control_exclusion_criteria_1 AS ( | |
SELECT co.person_id, cohort.standard_code_set AS code_set | |
FROM | |
{database}.condition_occurrence co, | |
{database}.ADHD_COHORT_VARS cohort | |
WHERE | |
co.condition_concept_id = CAST(cohort.standard_concept_id AS int64) | |
AND cohort.phenotype_definition_number = 5 | |
AND cohort.standard_code_set = {code_set_group} | |
GROUP BY co.person_id, cohort.standard_code_set | |
HAVING | |
COUNT(DISTINCT co.condition_concept_id) >= 1 | |
), | |
dx_control_exclusion_criteria_2 AS ( | |
SELECT co.person_id, cohort.standard_code_set AS code_set | |
FROM | |
{database}.condition_occurrence co, | |
{database}.ADHD_COHORT_VARS cohort | |
WHERE | |
co.condition_concept_id = CAST(cohort.standard_concept_id AS int64) | |
AND cohort.phenotype_definition_number = 6 | |
AND cohort.standard_code_set = {code_set_group} | |
GROUP BY co.person_id, cohort.standard_code_set | |
HAVING | |
COUNT(DISTINCT co.condition_concept_id) >= 1 | |
) | |
SELECT * FROM | |
(SELECT person_id, code_set, 'ADHD_CASE_TYPE1' AS cohort_type | |
FROM ( | |
(SELECT person_id, code_set FROM age_criteria_1 | |
INTERSECT DISTINCT | |
SELECT person_id, code_set FROM dx_case_inclusion_criteria_1 | |
INTERSECT DISTINCT | |
SELECT person_id, code_set FROM rx_case_inclusion_criteria_1) | |
EXCEPT DISTINCT | |
SELECT person_id, code_set FROM dx_case_exclusion_criteria_1) | |
GROUP BY person_id, code_set, cohort_type) | |
UNION ALL | |
(SELECT person_id, code_set, 'ADHD_CASE_TYPE2' AS cohort_type | |
FROM ( | |
(SELECT person_id, code_set FROM age_criteria_1 | |
INTERSECT DISTINCT | |
SELECT person_id, code_set FROM dx_case_inclusion_criteria_2) | |
EXCEPT DISTINCT | |
SELECT person_id, code_set FROM dx_case_exclusion_criteria_1) | |
GROUP BY person_id, code_set, cohort_type) | |
UNION ALL | |
(SELECT p.person_id, {code_set_group} AS code_set, 'ADHD_CONTROL' AS cohort_type | |
FROM {database}.person p | |
WHERE p.person_id NOT IN ( | |
SELECT person_id FROM rx_control_exclusion_criteria_1 | |
UNION DISTINCT | |
SELECT person_id FROM dx_control_exclusion_criteria_1 | |
UNION DISTINCT | |
SELECT person_id FROM dx_control_exclusion_criteria_2) | |
AND p.person_id IN ( | |
SELECT person_id FROM age_criteria_2 | |
INTERSECT DISTINCT | |
SELECT person_id FROM visit_criteria_1) | |
GROUP BY p.person_id, code_set, cohort_type) | |
; |
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-- CODES + ALL CLINICAL DOMAINS vs. CONDITIONS ONLY | |
WITH dx_case_inclusion_criteria_1 AS ( | |
SELECT co.person_id, cohort.standard_code_set AS code_set | |
FROM | |
{database}.condition_occurrence co, | |
{database}.ADHD_COHORT_VARS cohort | |
WHERE | |
co.condition_concept_id = CAST(cohort.standard_concept_id AS int64) | |
AND cohort.phenotype_definition_number = 1 | |
AND cohort.standard_code_set = {code_set_group} | |
GROUP BY | |
co.person_id, cohort.standard_code_set | |
HAVING | |
COUNT(DISTINCT co.condition_concept_id) >= 1 | |
), | |
rx_case_inclusion_criteria_1 AS ( | |
SELECT de.person_id, cohort.standard_code_set AS code_set | |
FROM | |
{database}.drug_exposure de, | |
{database}.ADHD_COHORT_VARS cohort | |
WHERE | |
de.drug_concept_id = CAST(cohort.standard_concept_id AS int64) | |
AND cohort.phenotype_definition_number = 2 | |
AND cohort.standard_code_set = {code_set_group} | |
GROUP BY | |
de.person_id, cohort.standard_code_set | |
HAVING | |
COUNT(DISTINCT de.drug_concept_id) >= 1 | |
), | |
dx_case_exclusion_criteria_1 AS ( | |
SELECT co.person_id, cohort.standard_code_set AS code_set | |
FROM | |
{database}.condition_occurrence co, | |
{database}.ADHD_COHORT_VARS cohort | |
WHERE | |
co.condition_concept_id = CAST(cohort.standard_concept_id AS int64) | |
AND cohort.phenotype_definition_number = 3 | |
AND cohort.standard_code_set = {code_set_group} | |
GROUP BY co.person_id, cohort.standard_code_set | |
HAVING | |
COUNT(DISTINCT co.condition_concept_id) >= 1 | |
), | |
dx_case_inclusion_criteria_2 AS ( | |
SELECT co.person_id, cohort.standard_code_set AS code_set | |
FROM | |
{database}.condition_occurrence co, | |
{database}.ADHD_COHORT_VARS cohort | |
WHERE | |
co.condition_concept_id = CAST(cohort.standard_concept_id AS int64) | |
AND cohort.phenotype_definition_number = 1 | |
AND cohort.standard_code_set = {code_set_group} | |
GROUP BY | |
co.person_id, cohort.standard_code_set | |
HAVING | |
COUNT(DISTINCT co.condition_concept_id) >= 1 | |
), | |
rx_control_exclusion_criteria_1 AS ( | |
SELECT de.person_id, cohort.standard_code_set AS code_set | |
FROM | |
{database}.drug_exposure de, | |
{database}.ADHD_COHORT_VARS cohort | |
WHERE | |
de.drug_concept_id = CAST(cohort.standard_concept_id AS int64) | |
AND cohort.phenotype_definition_number = 4 | |
AND cohort.standard_code_set = {code_set_group} | |
GROUP BY de.person_id, cohort.standard_code_set | |
HAVING | |
COUNT(DISTINCT de.drug_concept_id) >= 1 | |
), | |
dx_control_exclusion_criteria_1 AS ( | |
SELECT co.person_id, cohort.standard_code_set AS code_set | |
FROM | |
{database}.condition_occurrence co, | |
{database}.ADHD_COHORT_VARS cohort | |
WHERE | |
co.condition_concept_id = CAST(cohort.standard_concept_id AS int64) | |
AND cohort.phenotype_definition_number = 5 | |
AND cohort.standard_code_set = {code_set_group} | |
GROUP BY co.person_id, cohort.standard_code_set | |
HAVING | |
COUNT(DISTINCT co.condition_concept_id) >= 1 | |
), | |
dx_control_exclusion_criteria_2 AS ( | |
SELECT co.person_id, cohort.standard_code_set AS code_set | |
FROM | |
{database}.condition_occurrence co, | |
{database}.ADHD_COHORT_VARS cohort | |
WHERE | |
co.condition_concept_id = CAST(cohort.standard_concept_id AS int64) | |
AND cohort.phenotype_definition_number = 6 | |
AND cohort.standard_code_set = {code_set_group} | |
GROUP BY co.person_id, cohort.standard_code_set | |
HAVING | |
COUNT(DISTINCT co.condition_concept_id) >= 1 | |
) | |
SELECT * FROM | |
# all clinical domains + codes | |
(SELECT person_id, code_set, 'ADHD_CASE_TYPE1' AS cohort_type, 'ALL DOMAINS' AS clinical_data_type, 'CODES' AS cohort_assignment | |
FROM ( | |
(SELECT person_id, code_set FROM dx_case_inclusion_criteria_1 | |
INTERSECT DISTINCT | |
SELECT person_id, code_set FROM rx_case_inclusion_criteria_1) | |
EXCEPT DISTINCT | |
SELECT person_id, code_set FROM dx_case_exclusion_criteria_1) | |
GROUP BY person_id, code_set, cohort_type, clinical_data_type, cohort_assignment) | |
UNION ALL | |
(SELECT person_id, code_set, 'ADHD_CASE_TYPE2' AS cohort_type, 'ALL DOMAINS' AS clinical_data_type, 'CODES' AS cohort_assignment | |
FROM ( | |
SELECT person_id, code_set FROM dx_case_inclusion_criteria_2 | |
EXCEPT DISTINCT | |
SELECT person_id, code_set FROM dx_case_exclusion_criteria_1) | |
GROUP BY person_id, code_set, cohort_type, clinical_data_type, cohort_assignment) | |
UNION ALL | |
(SELECT p.person_id, {code_set_group} AS code_set, 'ADHD_CONTROL' AS cohort_type, 'ALL DOMAINS' AS clinical_data_type, 'CODES' AS cohort_assignment | |
FROM {database}.person p | |
WHERE p.person_id NOT IN ( | |
SELECT person_id FROM rx_control_exclusion_criteria_1 | |
UNION DISTINCT | |
SELECT person_id FROM dx_control_exclusion_criteria_1 | |
UNION DISTINCT | |
SELECT person_id FROM dx_control_exclusion_criteria_2) | |
GROUP BY p.person_id, code_set, cohort_type, clinical_data_type, cohort_assignment) | |
UNION ALL | |
# only conditions + codes | |
(SELECT person_id, code_set, 'ADHD_CASE_TYPE1' AS cohort_type, 'CONDITIONS ONLY' AS clinical_data_type, 'CODES' AS cohort_assignment | |
FROM ( | |
(SELECT person_id, code_set FROM dx_case_inclusion_criteria_1) | |
EXCEPT DISTINCT | |
SELECT person_id, code_set FROM dx_case_exclusion_criteria_1) | |
GROUP BY person_id, code_set, cohort_type, clinical_data_type, cohort_assignment) | |
UNION ALL | |
(SELECT person_id, code_set, 'ADHD_CASE_TYPE2' AS cohort_type, 'CONDITIONS ONLY' AS clinical_data_type, 'CODES' AS cohort_assignment | |
FROM ( | |
(SELECT person_id, code_set FROM dx_case_inclusion_criteria_2) | |
EXCEPT DISTINCT | |
SELECT person_id, code_set FROM dx_case_exclusion_criteria_1) | |
GROUP BY person_id, code_set, cohort_type, clinical_data_type, cohort_assignment) | |
UNION ALL | |
(SELECT p.person_id, {code_set_group} AS code_set, 'ADHD_CONTROL' AS cohort_type, 'CONDITIONS ONLY' AS clinical_data_type, 'CODES' AS cohort_assignment | |
FROM {database}.person p | |
WHERE p.person_id NOT IN ( | |
SELECT person_id FROM dx_control_exclusion_criteria_1 | |
UNION DISTINCT | |
SELECT person_id FROM dx_control_exclusion_criteria_2) | |
GROUP BY p.person_id, code_set, cohort_type, clinical_data_type, cohort_assignment) | |
; |
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-- DEFINITIONS + ALL CLINICAL DOMAINS vs. CONDITIONS ONLY | |
WITH age_criteria_1 AS ( | |
SELECT co.person_id, cohort.standard_code_set AS code_set | |
FROM | |
{database}.person p, | |
{database}.condition_occurrence co, | |
{database}.ADHD_COHORT_VARS cohort | |
WHERE p.person_id = co.person_id | |
AND co.condition_concept_id = CAST(cohort.standard_concept_id AS int64) | |
AND cohort.phenotype_definition_number = 1 | |
AND cohort.standard_code_set = {code_set_group} | |
GROUP BY | |
co.person_id, p.birth_datetime, cohort.standard_code_set | |
HAVING | |
DATETIME_DIFF(DATETIME(MIN(co.condition_start_datetime)), DATETIME(p.birth_datetime), DAY) >= 1460 | |
), | |
dx_case_inclusion_criteria_1 AS ( | |
SELECT co.person_id, cohort.standard_code_set AS code_set | |
FROM | |
{database}.condition_occurrence co, | |
{database}.ADHD_COHORT_VARS cohort, | |
{database}.visit_occurrence v | |
WHERE | |
co.visit_occurrence_id = v.visit_occurrence_id | |
AND co.condition_concept_id = CAST(cohort.standard_concept_id AS int64) | |
AND v.admitting_source_concept_id IN (44814672, 8870, 38004279, 8863, 8546) | |
AND cohort.phenotype_definition_number = 1 | |
AND cohort.standard_code_set = {code_set_group} | |
GROUP BY | |
co.person_id, cohort.standard_code_set | |
HAVING | |
COUNT(DISTINCT co.condition_concept_id) >= 1 | |
AND COUNT(DISTINCT v.visit_start_date) >= 1 | |
), | |
rx_case_inclusion_criteria_1 AS ( | |
SELECT de.person_id, cohort.standard_code_set AS code_set | |
FROM | |
{database}.drug_exposure de, | |
{database}.ADHD_COHORT_VARS cohort | |
WHERE | |
de.drug_concept_id = CAST(cohort.standard_concept_id AS int64) | |
AND cohort.phenotype_definition_number = 2 | |
AND cohort.standard_code_set = {code_set_group} | |
GROUP BY | |
de.person_id, cohort.standard_code_set | |
HAVING | |
COUNT(DISTINCT de.drug_concept_id) >= 1 | |
), | |
dx_case_exclusion_criteria_1 AS ( | |
SELECT co.person_id, cohort.standard_code_set AS code_set | |
FROM | |
{database}.condition_occurrence co, | |
{database}.ADHD_COHORT_VARS cohort | |
WHERE | |
co.condition_concept_id = CAST(cohort.standard_concept_id AS int64) | |
AND cohort.phenotype_definition_number = 3 | |
AND cohort.standard_code_set = {code_set_group} | |
GROUP BY co.person_id, cohort.standard_code_set | |
HAVING | |
COUNT(DISTINCT co.condition_concept_id) >= 1 | |
), | |
dx_case_inclusion_criteria_2 AS ( | |
SELECT co.person_id, cohort.standard_code_set AS code_set | |
FROM | |
{database}.condition_occurrence co, | |
{database}.ADHD_COHORT_VARS cohort, | |
{database}.visit_occurrence v | |
WHERE | |
co.visit_occurrence_id = v.visit_occurrence_id | |
AND co.condition_concept_id = CAST(cohort.standard_concept_id AS int64) | |
AND v.admitting_source_concept_id IN (44814672, 8870, 38004279, 8863, 8546) | |
AND cohort.phenotype_definition_number = 1 | |
AND cohort.standard_code_set = {code_set_group} | |
GROUP BY | |
co.person_id, cohort.standard_code_set | |
HAVING | |
COUNT(DISTINCT co.condition_concept_id) >= 1 | |
AND COUNT(DISTINCT v.visit_start_date) >= 2 | |
), | |
age_criteria_2 AS ( | |
SELECT co.person_id, {code_set_group} AS code_set | |
FROM | |
{database}.person p, | |
{database}.condition_occurrence co | |
WHERE p.person_id = co.person_id | |
GROUP BY | |
co.person_id, p.birth_datetime | |
HAVING | |
DATETIME_DIFF(DATETIME(MIN(co.condition_start_datetime)), DATETIME(p.birth_datetime), DAY) >= 1460 | |
), | |
visit_criteria_1 AS ( | |
SELECT v.person_id, {code_set_group} AS code_set | |
FROM | |
{database}.visit_occurrence v | |
GROUP BY | |
v.person_id, v.visit_end_datetime | |
HAVING | |
DATETIME(visit_end_datetime) >= DATETIME_ADD((SELECT DATETIME(MAX(visit_end_datetime)) FROM {database}.visit_occurrence), INTERVAL -5 YEAR) | |
AND COUNT(DISTINCT v.visit_start_date) >= 2 | |
), | |
rx_control_exclusion_criteria_1 AS ( | |
SELECT de.person_id, cohort.standard_code_set AS code_set | |
FROM | |
{database}.drug_exposure de, | |
{database}.ADHD_COHORT_VARS cohort | |
WHERE | |
de.drug_concept_id = CAST(cohort.standard_concept_id AS int64) | |
AND cohort.phenotype_definition_number = 4 | |
AND cohort.standard_code_set = {code_set_group} | |
GROUP BY de.person_id, cohort.standard_code_set | |
HAVING | |
COUNT(DISTINCT de.drug_concept_id) >= 1 | |
), | |
dx_control_exclusion_criteria_1 AS ( | |
SELECT co.person_id, cohort.standard_code_set AS code_set | |
FROM | |
{database}.condition_occurrence co, | |
{database}.ADHD_COHORT_VARS cohort | |
WHERE | |
co.condition_concept_id = CAST(cohort.standard_concept_id AS int64) | |
AND cohort.phenotype_definition_number = 5 | |
AND cohort.standard_code_set = {code_set_group} | |
GROUP BY co.person_id, cohort.standard_code_set | |
HAVING | |
COUNT(DISTINCT co.condition_concept_id) >= 1 | |
), | |
dx_control_exclusion_criteria_2 AS ( | |
SELECT co.person_id, cohort.standard_code_set AS code_set | |
FROM | |
{database}.condition_occurrence co, | |
{database}.ADHD_COHORT_VARS cohort | |
WHERE | |
co.condition_concept_id = CAST(cohort.standard_concept_id AS int64) | |
AND cohort.phenotype_definition_number = 6 | |
AND cohort.standard_code_set = {code_set_group} | |
GROUP BY co.person_id, cohort.standard_code_set | |
HAVING | |
COUNT(DISTINCT co.condition_concept_id) >= 1 | |
) | |
SELECT * FROM | |
# all clinical domains + definitions | |
(SELECT person_id, code_set, 'ADHD_CASE_TYPE1' AS cohort_type, 'ALL DOMAINS' AS clinical_data_type, 'DEFINITIONS' AS cohort_assignment | |
FROM ( | |
(SELECT person_id, code_set FROM age_criteria_1 | |
INTERSECT DISTINCT | |
SELECT person_id, code_set FROM dx_case_inclusion_criteria_1 | |
INTERSECT DISTINCT | |
SELECT person_id, code_set FROM rx_case_inclusion_criteria_1) | |
EXCEPT DISTINCT | |
SELECT person_id, code_set FROM dx_case_exclusion_criteria_1) | |
GROUP BY person_id, code_set, cohort_type, clinical_data_type, cohort_assignment) | |
UNION ALL | |
(SELECT person_id, code_set, 'ADHD_CASE_TYPE2' AS cohort_type, 'ALL DOMAINS' AS clinical_data_type, 'DEFINITIONS' AS cohort_assignment | |
FROM ( | |
(SELECT person_id, code_set FROM age_criteria_1 | |
INTERSECT DISTINCT | |
SELECT person_id, code_set FROM dx_case_inclusion_criteria_2) | |
EXCEPT DISTINCT | |
SELECT person_id, code_set FROM dx_case_exclusion_criteria_1) | |
GROUP BY person_id, code_set, cohort_type, clinical_data_type, cohort_assignment) | |
UNION ALL | |
(SELECT p.person_id, {code_set_group} AS code_set, 'ADHD_CONTROL' AS cohort_type, 'ALL DOMAINS' AS clinical_data_type, 'DEFINITIONS' AS cohort_assignment | |
FROM {database}.person p | |
WHERE p.person_id NOT IN ( | |
SELECT person_id FROM rx_control_exclusion_criteria_1 | |
UNION DISTINCT | |
SELECT person_id FROM dx_control_exclusion_criteria_1 | |
UNION DISTINCT | |
SELECT person_id FROM dx_control_exclusion_criteria_2) | |
AND p.person_id IN ( | |
SELECT person_id FROM age_criteria_2 | |
INTERSECT DISTINCT | |
SELECT person_id FROM visit_criteria_1) | |
GROUP BY p.person_id, code_set, cohort_type, clinical_data_type, cohort_assignment) | |
UNION ALL | |
# only conditions + definitions | |
(SELECT person_id, code_set, 'ADHD_CASE_TYPE1' AS cohort_type, 'CONDITIONS ONLY' AS clinical_data_type, 'DEFINITIONS' AS cohort_assignment | |
FROM ( | |
(SELECT person_id, code_set FROM age_criteria_1 | |
INTERSECT DISTINCT | |
SELECT person_id, code_set FROM dx_case_inclusion_criteria_1) | |
EXCEPT DISTINCT | |
SELECT person_id, code_set FROM dx_case_exclusion_criteria_1) | |
GROUP BY person_id, code_set, cohort_type, clinical_data_type, cohort_assignment) | |
UNION ALL | |
(SELECT person_id, code_set, 'ADHD_CASE_TYPE2' AS cohort_type, 'CONDITIONS ONLY' AS clinical_data_type, 'DEFINITIONS' AS cohort_assignment | |
FROM ( | |
(SELECT person_id, code_set FROM age_criteria_1 | |
INTERSECT DISTINCT | |
SELECT person_id, code_set FROM dx_case_inclusion_criteria_2) | |
EXCEPT DISTINCT | |
SELECT person_id, code_set FROM dx_case_exclusion_criteria_1) | |
GROUP BY person_id, code_set, cohort_type, clinical_data_type, cohort_assignment) | |
UNION ALL | |
(SELECT p.person_id, {code_set_group} AS code_set, 'ADHD_CONTROL' AS cohort_type, 'CONDITIONS ONLY' AS clinical_data_type, 'DEFINITIONS' AS cohort_assignment | |
FROM {database}.person p | |
WHERE p.person_id NOT IN ( | |
SELECT person_id FROM dx_control_exclusion_criteria_1 | |
UNION DISTINCT | |
SELECT person_id FROM dx_control_exclusion_criteria_2) | |
AND p.person_id IN ( | |
SELECT person_id FROM age_criteria_2 | |
INTERSECT DISTINCT | |
SELECT person_id FROM visit_criteria_1) | |
GROUP BY p.person_id, code_set, cohort_type, clinical_data_type, cohort_assignment) | |
; |
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