cannin

Setup ZSH

This gist will guide you through to setup starship along with zsh suggestions and zsh syntax highlight for your codespaces.

Table of Contents

• Setup ZSH Autocomplete
• Setup Starship
• Install Auto Suggestions
• Install ZSH Syntax Highlighting

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import requests
from diskcache import Cache
import os

# Ensure cache directory exists
os.makedirs('cache', exist_ok=True)
cache = Cache('cache')


def check_pmcid(pmid, email="[email protected]"):

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H1

H2

Bold bold text Italic italicized text Ordered List

1. First item
2. Second item
3. Third item Unordered List

• First item

cannin

library(ggplot2)
library(yaml)

# Function to summarize a ggplot object
# TODO: dendrograms with hclust do not work
summarize_ggplot <- function(object) {
  wrap <- function(x) paste(
    paste(strwrap(x, exdent = 2), collapse = "\n"),
    "\n", sep = ""
  )

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// ==UserScript==
// @name         PubMed Central LLM Summaries
// @namespace    http://example.com
// @version      0.2
// @description  Add LLM Summaries to PMC
// @author       cannin
// @match        https://pubmed.ncbi.nlm.nih.gov/?term=*
// @match        https://pubmed.ncbi.nlm.nih.gov/*/
// @match        https://www.ncbi.nlm.nih.gov/labs/pmc/articles/*/
// @match        https://www.ncbi.nlm.nih.gov/pmc/articles/*/

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import json

import dspy
from dspy.teleprompt import BootstrapFewShot, LabeledFewShot
from dspy.evaluate import Evaluate, answer_exact_match
from dspy.datasets import DataLoader


# PURPOSE ----
# Example with dataset read from CSV using LLM judge to evaluate the answer

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\begingroup
    \fontsize{6pt}{12pt}\selectfont
    \begin{verbatim}  
6pt-tiny
    \end{verbatim}  
\endgroup

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RETRIEVE CaImAn DOCKER IMAGE

https://hub.docker.com/r/cannin/caiman

docker pull cannin/caiman:1.9.15-20230906

RUN CaImAn DOCKER CONTAINER

sudo docker rm -f cm; sudo docker run --name cm -d -p 4444:4444 -p 5900:5900 -8888:8888 -e SE_VNC_PASSWORD=password -v /home/ubuntu/tmp:/home/seluser/tmp --shm-size="4g" cannin/caiman:1.9.15-20230906

cannin

library(lintr)

# Excluded linters
# closed_curly_linter
# camel_case_linter
# implicit_integer_linter
# paren_brace_linter
# pipe_continuation_linter
# trailing_blank_lines_linter
# commented_code_linter

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