gistfile1.txt

## Java

Oscar oscar = new Oscar();
List<ResolvedNamedEntity> entities = oscar.findAndResolveNamedEntities(s);
for (ResolvedNamedEntity ne : entities) {
    System.out.println(ne.getSurface());
    ChemicalStructure inchi = ne.getFirstChemicalStructure(FormatType.INCHI);
    if (inchi != null) {
        System.out.println(inchi);
    }
    System.out.println();
}




## Ruby


#include_class "java.util.List"
#include_class "java.util.ArrayList"
#include_class "uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ChemicalStructure"
#include_class "uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.FormatType"
#include_class "uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ResolvedNamedEntity"
#include_class "uk.ac.cam.ch.wwmm.oscar.Oscar"


oscar = Rjb::import('uk.ac.cam.ch.wwmm.oscar.Oscar')


entities = Rjb::import('uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ResolvedNamedEntity')


entities = oscar.findAndResolveNamedEntities(name)


for ne in entities

  puts ne.getSurface()
  inchi = ne.getFirstChemicalStructure(FormatType::INCHI)
  inchi != nil ? (puts inchi) : ""

end