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October 10, 2013 04:52
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| #!/bin/bash | |
| # GHGVC install script for rails application | |
| # Written by Carl Crott <[email protected]> | |
| sudo apt-get -y install git-core curl locate | |
| git clone http://github.com/delinquentme/ghgvc.git | |
| curl -L https://get.rvm.io | bash -s stable --ruby | |
| ## RVM reqs | |
| sudo apt-get -y install build-essential openssl libreadline6 libreadline6-dev curl git-core zlib1g zlib1g-dev libssl-dev libyaml-dev libsqlite3-0 libsqlite3-dev sqlite3 libxml2-dev libxslt-dev autoconf libc6-dev ncurses-dev automake libtool bison subversion | |
| RVM_DIR=$(which rvm) | |
| if [ $RVM_DIR ]; then | |
| echo "RVM confirmed" | |
| echo "export rvm_trust_rvmrcs_flag=1" > ~/.rvmrc #auto-trust .rvmrc flags | |
| source ~/.rvmrc | |
| rvm install ruby-1.9.3-p125 | |
| rvm --default use ruby-1.9.3-p125 | |
| cd ghgvc/ | |
| sudo git checkout name_indexing | |
| bundle install --without development | |
| # build out net-cdf parsing | |
| sudo apt-get -y install netcdf-bin libnetcdf-dev | |
| cd /home/ubuntu/.rvm/rubies/ruby-1.9.3-p125/bin/ | |
| rvm --default use ruby-1.9.3-p125 | |
| wget http://www.gfd-dennou.org/arch/ruby/products/ruby-netcdf/release/ruby-netcdf-0.6.6.tar.gz | |
| tar -zxvf ruby-netcdf-0.6.6.tar.gz && cd ruby-netcdf-0.6.6/ | |
| ruby -rubygems extconf.rb --with-narray-include=/home/ubuntu/.rvm/gems/ruby-1.9.3-p125@ghgvc/gems/narray-0.6.0.8/ | |
| # edit make makefile per: | |
| #https://bbs.archlinux.org/viewtopic.php?id=163623 | |
| sudo make | |
| sudo make install | |
| cd ../ && sudo rm -rf ruby-netcdf* | |
| # build out and workaround for specifying production | |
| RAILS_ENV=production bundle exec rake db:create db:schema:load | |
| else | |
| echo " SSH back in to re-source RVM " | |
| exit | |
| fi | |
| cat << 'EOF' > /config/setup_load_paths.rb | |
| if ENV['MY_RUBY_HOME'] && ENV['MY_RUBY_HOME'].include?('rvm') | |
| begin | |
| gems_path = ENV['MY_RUBY_HOME'].split(/@/)[0].sub(/rubies/,'gems') | |
| ENV['GEM_PATH'] = "#{gems_path}:#{gems_path}@global" | |
| require 'rvm' | |
| RVM.use_from_path! File.dirname(File.dirname(__FILE__)) | |
| rescue LoadError | |
| raise "RVM gem is currently unavailable." | |
| end | |
| end | |
| # If you're not using Bundler at all, remove lines bellow | |
| ENV['BUNDLE_GEMFILE'] = File.expand_path('../Gemfile', File.dirname(__FILE__)) | |
| require 'bundler/setup' | |
| EOF | |
| ## MySQL reqs | |
| sudo apt-get -y install libxslt-dev libxml2-dev libsqlite3-dev libmysqlclient-dev | |
| cd ~/ghgvc/ | |
| ###### Server Configs ### | |
| sudo useradd deploy | |
| sudo apt-get -y update && sudo apt-get -y upgrade | |
| sudo apt-get -y install build-essential zlib1g-dev libssl-dev libreadline-dev libyaml-dev libcurl4-openssl-dev curl git-core python-software-properties | |
| gem install passenger | |
| #passenger-install-nginx-module | |
| rvmsudo -E /home/ubuntu/.rvm/wrappers/ruby-1.9.3-p125@ghgvc/ruby /home/ubuntu/.rvm/gems/ruby-1.9.3-p125@ghgvc/gems/passenger-4.0.19/bin/passenger-install-nginx-module | |
| sudo chown -R ubuntu /home/ubuntu/ghgvc/* | |
| echo 1.9.3-p125@ghgvc >> .ruby-version | |
| wget -O init-deb.sh http://library.linode.com/assets/660-init-deb.sh | |
| sudo mv init-deb.sh /etc/init.d/nginx | |
| sudo chmod +x /etc/init.d/nginx | |
| sudo /usr/sbin/update-rc.d -f nginx defaults | |
| cat <<'EOF' > ~/ghgvc/config/database.yml | |
| development: | |
| adapter: mysql2 | |
| database: ghgvc_dev | |
| pool: 5 | |
| timeout: 5000 | |
| test: | |
| adapter: sqlite3 | |
| database: db/test.sqlite3 | |
| pool: 5 | |
| timeout: 5000 | |
| production: | |
| adapter: sqlite3 | |
| database: db/prod.sqlite3 | |
| pool: 5 | |
| timeout: 5000 | |
| EOF | |
| # irb | |
| # require 'numru/netcdf' | |
| sudo service nginx stop | |
| sudo rm /opt/nginx/conf/nginx.conf | |
| sudo cat <<'EOF' > nginx.conf | |
| worker_processes 1; | |
| events { | |
| worker_connections 1024; | |
| } | |
| http { | |
| passenger_root /home/ubuntu/.rvm/gems/ruby-1.9.3-p125@ghgvc/gems/passenger-4.0.19; | |
| passenger_ruby /home/ubuntu/.rvm/wrappers/ruby-1.9.3-p125@ghgvc/ruby; | |
| include mime.types; | |
| default_type application/octet-stream; | |
| sendfile on; | |
| keepalive_timeout 65; | |
| server { | |
| listen 80; | |
| server_name localhost; | |
| location / { | |
| root /home/ubuntu/ghgvc/public; # <--- be sure to point to 'public'! | |
| passenger_enabled on; | |
| index index.html index.htm; | |
| } | |
| error_page 500 502 503 504 /50x.html; | |
| location = /50x.html { | |
| root html; | |
| } | |
| } | |
| } | |
| EOF | |
| sudo cp nginx.conf /opt/nginx/conf/nginx.conf | |
| sudo service nginx start | |
| sudo apt-add-repository -y ppa:chris-lea/node.js | |
| sudo apt-get -y install nodejs | |
| sudo service nginx restart | |
| echo "Nginx configured" | |
| echo "Installing ghgvcR libs" | |
| cd ~/ | |
| git clone http://github.com/delinquentme/ghgvcR | |
| git clone http://github.com/PecanProject/pecan | |
| echo "deb http://lib.stat.cmu.edu/R/CRAN/bin/linux/ubuntu precise/" >> /etc/apt/sources.list | |
| sudo apt-get update | |
| sudo apt-get -y install libcurl4-gnutls-dev r-cran-xml | |
| # devtools: | |
| #http://stackoverflow.com/questions/16467725/r-devtools-github-install-fails | |
| echo "configure R and devtools for ghgvcR code" | |
| #git clone git://github.com/hadley/devtools.git && R CMD build devtools | |
| #R CMD install devtools_1.3.99.tar.gz /home/ubuntu/R/x86_64-pc-linux-gnu-library/2.14/ | |
| #sudo echo "deb http://cran.rstudio.com/bin/linux/ubuntu `lsb_release -s -c`/" > /etc/apt/sources.list.d/R.list | |
| #sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9 | |
| #sudo apt-get -y update && sudo apt-get -y upgrade | |
| #sudo apt-get -y install build-essential git gfortran openmpi-bin libhdf5-openmpi-dev r-base-core jags liblapack-dev libnetcdf-dev netcdf-bin bc libcurl4-openssl-dev curl udunits-bin libudunits2-dev libmysqlclient-dev | |
| #sudo apt-get -y install libgdal1-dev libproj-dev | |
| #echo 'install.packages("devtools", repos="http://cran.rstudio.com/")' | R --vanilla | |
| #echo 'install.packages("devtools", repos="http://cran.rstudio.com/")' | R --vanilla | |
| sudo apt-get -y install gksu | |
| gpg --keyserver keyserver.ubuntu.com --recv-key E084DAB9 | |
| gpg -a --export E084DAB9 | sudo apt-key add - | |
| sudo echo "deb http://cran.cnr.berkeley.edu/bin/linux/ubuntu precise/" >> /etc/apt/sources.list | |
| sudo apt-get update | |
| sudo apt-get -y install r-base | |
| ######################## | |
| sudo cat <<'EOF' > ./build_ghgvcR.r | |
| install.packages("devtools") # this causes issues on ubuntu 12.04 | |
| install.packages("RCurl"); install.packages("rjson"); install.packages("httr") | |
| library(devtools) | |
| install("~/ghgvcR/") | |
| install("/home/thrive/rails_projects/PEcAn/utils") | |
| EOF | |
| ############################## | |
| sudo chmod 0755 ./build_ghgvcR.r && ./build_ghgvcR.r | |
| cd ~/ghgvcR/ | |
| sudo chmod 0755 /src/ghgvc_script.R | |
| ./src/ghgvc_script.R | |
| #sudo apt-get -y install r-base-core=2.15.3* r-recommended=2.15.3* r-doc-html=2.15.3* r-base=2.15.3* | |
| #$IP_ADDY=$(curl http://canhazip.com/) | |
| #http://ec2-184-73-47-14.compute-1.amazonaws.com/ | |
| echo "GHGVC Server build complete." | |
| #ssh -v -i ~/.ec2/ec2.pem [email protected] |
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| ubuntu@ip-10-145-231-204:~$ sudo nano ghgvc.sh | |
| ubuntu@ip-10-145-231-204:~$ sudo chmod 0755 ghgvc.sh | |
| ubuntu@ip-10-145-231-204:~$ sudo ./ghgvc.sh | |
| Reading package lists... Done | |
| Building dependency tree | |
| Reading state information... Done | |
| curl is already the newest version. | |
| The following extra packages will be installed: | |
| git git-man liberror-perl | |
| Suggested packages: | |
| git-daemon-run git-daemon-sysvinit git-doc git-el git-arch git-cvs git-svn git-email git-gui gitk gitweb | |
| The following NEW packages will be installed: | |
| git git-core git-man liberror-perl locate | |
| 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. | |
| Need to get 6,840 kB of archives. | |
| After this operation, 15.6 MB of additional disk space will be used. | |
| Get:1 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise/main liberror-perl all 0.17-1 [23.8 kB] | |
| Get:2 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise/main git-man all 1:1.7.9.5-1 [630 kB] | |
| Get:3 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise/main git amd64 1:1.7.9.5-1 [6,087 kB] | |
| Get:4 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise/main git-core all 1:1.7.9.5-1 [1,384 B] | |
| Get:5 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise/universe locate amd64 4.4.2-4ubuntu1 [98.0 kB] | |
| Fetched 6,840 kB in 0s (13.4 MB/s) | |
| Selecting previously unselected package liberror-perl. | |
| (Reading database ... 47481 files and directories currently installed.) | |
| Unpacking liberror-perl (from .../liberror-perl_0.17-1_all.deb) ... | |
| Selecting previously unselected package git-man. | |
| Unpacking git-man (from .../git-man_1%3a1.7.9.5-1_all.deb) ... | |
| Selecting previously unselected package git. | |
| Unpacking git (from .../git_1%3a1.7.9.5-1_amd64.deb) ... | |
| Selecting previously unselected package git-core. | |
| Unpacking git-core (from .../git-core_1%3a1.7.9.5-1_all.deb) ... | |
| Selecting previously unselected package locate. | |
| Unpacking locate (from .../locate_4.4.2-4ubuntu1_amd64.deb) ... | |
| Processing triggers for initramfs-tools ... | |
| update-initramfs: Generating /boot/initrd.img-3.2.0-53-virtual | |
| Processing triggers for man-db ... | |
| Setting up liberror-perl (0.17-1) ... | |
| Setting up git-man (1:1.7.9.5-1) ... | |
| Setting up git (1:1.7.9.5-1) ... | |
| Setting up git-core (1:1.7.9.5-1) ... | |
| Setting up locate (4.4.2-4ubuntu1) ... | |
| Cloning into 'ghgvc'... | |
| remote: Counting objects: 2157, done. | |
| remote: Compressing objects: 100% (971/971), done. | |
| remote: Total 2157 (delta 1201), reused 2087 (delta 1139) | |
| Receiving objects: 100% (2157/2157), 1.08 GiB | 34.98 MiB/s, done. | |
| Resolving deltas: 100% (1201/1201), done. | |
| % Total % Received % Xferd Average Speed Time Time Time Current | |
| Dload Upload Total Spent Left Speed | |
| 100 184 100 184 0 0 182 0 0:00:01 0:00:01 --:--:-- 220 | |
| 100 15779 100 15779 0 0 12470 0 0:00:01 0:00:01 --:--:-- 906k | |
| Please read and follow further instructions. | |
| Press ENTER to continue. | |
| Downloading RVM from wayneeseguin branch stable | |
| % Total % Received % Xferd Average Speed Time Time Time Current | |
| Dload Upload Total Spent Left Speed | |
| 100 124 100 124 0 0 3572 0 --:--:-- --:--:-- --:--:-- 4960 | |
| 100 1082k 100 1082k 0 0 4320k 0 --:--:-- --:--:-- --:--:-- 4320k | |
| Creating group 'rvm' | |
| Installing RVM to /usr/local/rvm/ | |
| Installation of RVM in /usr/local/rvm/ is almost complete: | |
| * First you need to add all users that will be using rvm to 'rvm' group, | |
| and logout - login again, anyone using rvm will be operating with `umask u=rwx,g=rwx,o=rx`. | |
| * To start using RVM you need to run `source /etc/profile.d/rvm.sh` | |
| in all your open shell windows, in rare cases you need to reopen all shell windows. | |
| # ubuntu, | |
| # | |
| # Thank you for using RVM! | |
| # I sincerely hope that RVM helps to make your life easier and more enjoyable!!! | |
| # | |
| # ~Wayne | |
| # In case of problems: | |
| # run and read: rvm notes | |
| # read docs: http://rvm.io/ | |
| # talk to us: http://webchat.freenode.net/?channels=rvm (http://freenode.net/faq.shtml#plusr) | |
| # read cheatsheet: http://cheat.errtheblog.com/s/rvm | |
| # watch screencast: http://screencasts.org/episodes/how-to-use-rvm | |
| # open a bug report: https://github.com/wayneeseguin/rvm/issues | |
| rvm 1.23.0 (stable) by Wayne E. Seguin <[email protected]>, Michal Papis <[email protected]> [https://rvm.io/] | |
| Searching for binary rubies, this might take some time. | |
| Checking requirements for ubuntu. | |
| Installing requirements for ubuntu. | |
| Updating system...................................... | |
| Installing required packages: gawk, g++, gcc, make, libc6-dev, libreadline6-dev, zlib1g-dev, libssl-dev, libyaml-dev, libsqlite3-dev, sqlite3, autoconf, libgdbm-dev, libncurses5-dev, automake, libtool, bison, pkg-config, libffi-dev....................................................................................................................................................................................... | |
| Requirements installation successful. | |
| ruby-2.0.0-p247 - #configure | |
| ruby-2.0.0-p247 - #download | |
| % Total % Received % Xferd Average Speed Time Time Time Current | |
| Dload Upload Total Spent Left Speed | |
| 100 19.0M 100 19.0M 0 0 3928k 0 0:00:04 0:00:04 --:--:-- 4546k | |
| ruby-2.0.0-p247 - #validate archive | |
| ruby-2.0.0-p247 - #extract | |
| ruby-2.0.0-p247 - #validate binary | |
| ruby-2.0.0-p247 - #setup | |
| Saving wrappers to '/usr/local/rvm/wrappers/ruby-2.0.0-p247'........ | |
| ruby-2.0.0-p247 - #importing default gemsets, this may take time....................... | |
| Creating alias default for ruby-2.0.0-p247. | |
| Recording alias default for ruby-2.0.0-p247. | |
| Creating default links/files | |
| Saving wrappers to '/usr/local/rvm/bin'........ | |
| * To start using RVM you need to run `source /usr/local/rvm/scripts/rvm` | |
| in all your open shell windows, in rare cases you need to reopen all shell windows. | |
| Reading package lists... Done | |
| Building dependency tree | |
| Reading state information... Done | |
| Note, selecting 'libxslt1-dev' instead of 'libxslt-dev' | |
| Note, selecting 'libncurses5-dev' instead of 'ncurses-dev' | |
| autoconf is already the newest version. | |
| automake is already the newest version. | |
| bison is already the newest version. | |
| git-core is already the newest version. | |
| libncurses5-dev is already the newest version. | |
| libreadline6 is already the newest version. | |
| libreadline6-dev is already the newest version. | |
| libtool is already the newest version. | |
| libyaml-dev is already the newest version. | |
| zlib1g is already the newest version. | |
| zlib1g-dev is already the newest version. | |
| libc6-dev is already the newest version. | |
| libsqlite3-0 is already the newest version. | |
| libsqlite3-dev is already the newest version. | |
| libssl-dev is already the newest version. | |
| openssl is already the newest version. | |
| sqlite3 is already the newest version. | |
| The following extra packages will be installed: | |
| dpkg-dev fakeroot libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libapr1 libaprutil1 libdb4.8 libdpkg-perl libneon27-gnutls libsvn1 libxslt1.1 | |
| Suggested packages: | |
| debian-keyring subversion-tools db4.8-util | |
| The following NEW packages will be installed: | |
| build-essential dpkg-dev fakeroot libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libapr1 libaprutil1 libdb4.8 libdpkg-perl libneon27-gnutls libsvn1 libxml2-dev | |
| libxslt1-dev libxslt1.1 subversion | |
| The following packages will be upgraded: | |
| curl | |
| 1 upgraded, 16 newly installed, 0 to remove and 37 not upgraded. | |
| Need to get 4,528 kB of archives. | |
| After this operation, 14.5 MB of additional disk space will be used. | |
| Get:1 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise/main libdb4.8 amd64 4.8.30-11ubuntu1 [679 kB] | |
| Get:2 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise/main libapr1 amd64 1.4.6-1 [89.6 kB] | |
| Get:3 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise/main libaprutil1 amd64 1.3.12+dfsg-3 [74.6 kB] | |
| Get:4 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise-updates/main libneon27-gnutls amd64 0.29.6-1ubuntu1 [76.4 kB] | |
| Get:5 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise-updates/main libsvn1 amd64 1.6.17dfsg-3ubuntu3.3 [820 kB] | |
| Get:6 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise-updates/main libxslt1.1 amd64 1.1.26-8ubuntu1.3 [167 kB] | |
| Get:7 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise-updates/main libdpkg-perl all 1.16.1.2ubuntu7.1 [180 kB] | |
| Get:8 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise-updates/main dpkg-dev all 1.16.1.2ubuntu7.1 [469 kB] | |
| Get:9 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise-updates/main build-essential amd64 11.5ubuntu2.1 [5,816 B] | |
| Get:10 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise-updates/main curl amd64 7.22.0-3ubuntu4.3 [138 kB] | |
| Get:11 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise/main fakeroot amd64 1.18.2-1 [87.2 kB] | |
| Get:12 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise/main libalgorithm-diff-perl all 1.19.02-2 [50.7 kB] | |
| Get:13 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise/main libalgorithm-diff-xs-perl amd64 0.04-2build2 [12.4 kB] | |
| Get:14 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise/main libalgorithm-merge-perl all 0.08-2 [12.7 kB] | |
| Get:15 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise-updates/main libxml2-dev amd64 2.7.8.dfsg-5.1ubuntu4.6 [805 kB] | |
| Get:16 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise-updates/main libxslt1-dev amd64 1.1.26-8ubuntu1.3 [564 kB] | |
| Get:17 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise-updates/main subversion amd64 1.6.17dfsg-3ubuntu3.3 [297 kB] | |
| Fetched 4,528 kB in 1s (4,045 kB/s) | |
| Selecting previously unselected package libdb4.8. | |
| (Reading database ... 51153 files and directories currently installed.) | |
| Unpacking libdb4.8 (from .../libdb4.8_4.8.30-11ubuntu1_amd64.deb) ... | |
| Selecting previously unselected package libapr1. | |
| Unpacking libapr1 (from .../libapr1_1.4.6-1_amd64.deb) ... | |
| Selecting previously unselected package libaprutil1. | |
| Unpacking libaprutil1 (from .../libaprutil1_1.3.12+dfsg-3_amd64.deb) ... | |
| Selecting previously unselected package libneon27-gnutls. | |
| Unpacking libneon27-gnutls (from .../libneon27-gnutls_0.29.6-1ubuntu1_amd64.deb) ... | |
| Selecting previously unselected package libsvn1. | |
| Unpacking libsvn1 (from .../libsvn1_1.6.17dfsg-3ubuntu3.3_amd64.deb) ... | |
| Selecting previously unselected package libxslt1.1. | |
| Unpacking libxslt1.1 (from .../libxslt1.1_1.1.26-8ubuntu1.3_amd64.deb) ... | |
| Selecting previously unselected package libdpkg-perl. | |
| Unpacking libdpkg-perl (from .../libdpkg-perl_1.16.1.2ubuntu7.1_all.deb) ... | |
| Selecting previously unselected package dpkg-dev. | |
| Unpacking dpkg-dev (from .../dpkg-dev_1.16.1.2ubuntu7.1_all.deb) ... | |
| Selecting previously unselected package build-essential. | |
| Unpacking build-essential (from .../build-essential_11.5ubuntu2.1_amd64.deb) ... | |
| Preparing to replace curl 7.22.0-3ubuntu4.2 (using .../curl_7.22.0-3ubuntu4.3_amd64.deb) ... | |
| Unpacking replacement curl ... | |
| Selecting previously unselected package fakeroot. | |
| Unpacking fakeroot (from .../fakeroot_1.18.2-1_amd64.deb) ... | |
| Selecting previously unselected package libalgorithm-diff-perl. | |
| Unpacking libalgorithm-diff-perl (from .../libalgorithm-diff-perl_1.19.02-2_all.deb) ... | |
| Selecting previously unselected package libalgorithm-diff-xs-perl. | |
| Unpacking libalgorithm-diff-xs-perl (from .../libalgorithm-diff-xs-perl_0.04-2build2_amd64.deb) ... | |
| Selecting previously unselected package libalgorithm-merge-perl. | |
| Unpacking libalgorithm-merge-perl (from .../libalgorithm-merge-perl_0.08-2_all.deb) ... | |
| Selecting previously unselected package libxml2-dev. | |
| Unpacking libxml2-dev (from .../libxml2-dev_2.7.8.dfsg-5.1ubuntu4.6_amd64.deb) ... | |
| Selecting previously unselected package libxslt1-dev. | |
| Unpacking libxslt1-dev (from .../libxslt1-dev_1.1.26-8ubuntu1.3_amd64.deb) ... | |
| Selecting previously unselected package subversion. | |
| Unpacking subversion (from .../subversion_1.6.17dfsg-3ubuntu3.3_amd64.deb) ... | |
| Processing triggers for man-db ... | |
| Setting up libdb4.8 (4.8.30-11ubuntu1) ... | |
| Setting up libapr1 (1.4.6-1) ... | |
| Setting up libaprutil1 (1.3.12+dfsg-3) ... | |
| Setting up libneon27-gnutls (0.29.6-1ubuntu1) ... | |
| Setting up libsvn1 (1.6.17dfsg-3ubuntu3.3) ... | |
| Setting up libxslt1.1 (1.1.26-8ubuntu1.3) ... | |
| Setting up libdpkg-perl (1.16.1.2ubuntu7.1) ... | |
| Setting up dpkg-dev (1.16.1.2ubuntu7.1) ... | |
| Setting up build-essential (11.5ubuntu2.1) ... | |
| Setting up curl (7.22.0-3ubuntu4.3) ... | |
| Setting up fakeroot (1.18.2-1) ... | |
| update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode. | |
| Setting up libalgorithm-diff-perl (1.19.02-2) ... | |
| Setting up libalgorithm-diff-xs-perl (0.04-2build2) ... | |
| Setting up libalgorithm-merge-perl (0.08-2) ... | |
| Setting up libxml2-dev (2.7.8.dfsg-5.1ubuntu4.6) ... | |
| Setting up libxslt1-dev (1.1.26-8ubuntu1.3) ... | |
| Setting up subversion (1.6.17dfsg-3ubuntu3.3) ... | |
| Processing triggers for libc-bin ... | |
| ldconfig deferred processing now taking place | |
| SSH back in to re-source RVM | |
| ubuntu@ip-10-145-231-204:~$ logout | |
| debug1: client_input_channel_req: channel 0 rtype exit-status reply 0 | |
| debug1: client_input_channel_req: channel 0 rtype [email protected] reply 0 | |
| debug1: channel 0: free: client-session, nchannels 1 | |
| Connection to ec2-54-211-180-228.compute-1.amazonaws.com closed. | |
| Transferred: sent 6176, received 70384 bytes, in 416.9 seconds | |
| Bytes per second: sent 14.8, received 168.8 | |
| debug1: Exit status 0 | |
| thrive@thrive-laptop:~$ echo "###############################\n############ SSHd BACK IN ##############"\n####################### | |
| ###############################\n############ SSHd BACK IN ##############n####################### | |
| thrive@thrive-laptop:~$ ssh -v -i ~/.ec2/ec2.pem [email protected] | |
| OpenSSH_5.3p1 Debian-3ubuntu7, OpenSSL 0.9.8k 25 Mar 2009 | |
| debug1: Reading configuration data /home/thrive/.ssh/config | |
| debug1: Reading configuration data /etc/ssh/ssh_config | |
| debug1: Applying options for * | |
| debug1: Connecting to ec2-54-211-180-228.compute-1.amazonaws.com [54.211.180.228] port 22. | |
| debug1: Connection established. | |
| debug1: identity file /home/thrive/.ec2/ec2.pem type -1 | |
| debug1: Remote protocol version 2.0, remote software version OpenSSH_5.9p1 Debian-5ubuntu1.1 | |
| debug1: match: OpenSSH_5.9p1 Debian-5ubuntu1.1 pat OpenSSH* | |
| debug1: Enabling compatibility mode for protocol 2.0 | |
| debug1: Local version string SSH-2.0-OpenSSH_5.3p1 Debian-3ubuntu7 | |
| debug1: SSH2_MSG_KEXINIT sent | |
| debug1: SSH2_MSG_KEXINIT received | |
| debug1: kex: server->client aes128-ctr hmac-md5 none | |
| debug1: kex: client->server aes128-ctr hmac-md5 none | |
| debug1: SSH2_MSG_KEX_DH_GEX_REQUEST(1024<1024<8192) sent | |
| debug1: expecting SSH2_MSG_KEX_DH_GEX_GROUP | |
| debug1: SSH2_MSG_KEX_DH_GEX_INIT sent | |
| debug1: expecting SSH2_MSG_KEX_DH_GEX_REPLY | |
| debug1: Host 'ec2-54-211-180-228.compute-1.amazonaws.com' is known and matches the RSA host key. | |
| debug1: Found key in /home/thrive/.ssh/known_hosts:96 | |
| debug1: ssh_rsa_verify: signature correct | |
| debug1: SSH2_MSG_NEWKEYS sent | |
| debug1: expecting SSH2_MSG_NEWKEYS | |
| debug1: SSH2_MSG_NEWKEYS received | |
| debug1: SSH2_MSG_SERVICE_REQUEST sent | |
| debug1: SSH2_MSG_SERVICE_ACCEPT received | |
| debug1: Authentications that can continue: publickey | |
| debug1: Next authentication method: publickey | |
| debug1: Offering public key: [email protected] | |
| debug1: Authentications that can continue: publickey | |
| debug1: Trying private key: /home/thrive/.ec2/ec2.pem | |
| debug1: read PEM private key done: type RSA | |
| debug1: Authentication succeeded (publickey). | |
| debug1: channel 0: new [client-session] | |
| debug1: Requesting [email protected] | |
| debug1: Entering interactive session. | |
| debug1: Sending environment. | |
| debug1: Sending env LANG = en_US.utf8 | |
| Welcome to Ubuntu 12.04.3 LTS (GNU/Linux 3.2.0-53-virtual x86_64) | |
| * Documentation: https://help.ubuntu.com/ | |
| System information as of Thu Oct 10 04:51:33 UTC 2013 | |
| System load: 0.33 Processes: 65 | |
| Usage of /: 60.9% of 7.87GB Users logged in: 0 | |
| Memory usage: 14% IP address for eth0: 10.145.231.204 | |
| Swap usage: 0% | |
| Graph this data and manage this system at https://landscape.canonical.com/ | |
| Get cloud support with Ubuntu Advantage Cloud Guest: | |
| http://www.ubuntu.com/business/services/cloud | |
| Use Juju to deploy your cloud instances and workloads: | |
| https://juju.ubuntu.com/#cloud-precise | |
| Last login: Thu Oct 10 04:44:09 2013 from 66.233.132.203 | |
| ubuntu@ip-10-145-231-204:~$ ./ghgvc | |
| -bash: ./ghgvc: Is a directory | |
| ubuntu@ip-10-145-231-204:~$ ./ghgvc.sh | |
| Reading package lists... Done | |
| Building dependency tree | |
| Reading state information... Done | |
| git-core is already the newest version. | |
| locate is already the newest version. | |
| curl is already the newest version. | |
| 0 upgraded, 0 newly installed, 0 to remove and 37 not upgraded. | |
| fatal: destination path 'ghgvc' already exists and is not an empty directory. | |
| % Total % Received % Xferd Average Speed Time Time Time Current | |
| Dload Upload Total Spent Left Speed | |
| 100 184 100 184 0 0 529 0 --:--:-- --:--:-- --:--:-- 661 | |
| 100 15779 100 15779 0 0 38859 0 --:--:-- --:--:-- --:--:-- 38859 | |
| Please read and follow further instructions. | |
| Press ENTER to continue. | |
| bash: line 584: /usr/local/rvm/RELEASE: Permission denied | |
| Reading package lists... Done | |
| Building dependency tree | |
| Reading state information... Done | |
| Note, selecting 'libxslt1-dev' instead of 'libxslt-dev' | |
| Note, selecting 'libncurses5-dev' instead of 'ncurses-dev' | |
| autoconf is already the newest version. | |
| automake is already the newest version. | |
| bison is already the newest version. | |
| git-core is already the newest version. | |
| libncurses5-dev is already the newest version. | |
| libreadline6 is already the newest version. | |
| libreadline6-dev is already the newest version. | |
| libtool is already the newest version. | |
| libyaml-dev is already the newest version. | |
| zlib1g is already the newest version. | |
| zlib1g-dev is already the newest version. | |
| build-essential is already the newest version. | |
| curl is already the newest version. | |
| libc6-dev is already the newest version. | |
| libsqlite3-0 is already the newest version. | |
| libsqlite3-dev is already the newest version. | |
| libssl-dev is already the newest version. | |
| libxml2-dev is already the newest version. | |
| libxslt1-dev is already the newest version. | |
| openssl is already the newest version. | |
| sqlite3 is already the newest version. | |
| subversion is already the newest version. | |
| 0 upgraded, 0 newly installed, 0 to remove and 37 not upgraded. | |
| RVM confirmed | |
| mkdir: cannot create directory `/usr/local/rvm/log/ruby-1.9.3-p125': Permission denied | |
| Could not detect ruby version/name for installation, please be more specific. | |
| RVM is not a function, selecting rubies with 'rvm use ...' will not work. | |
| You need to change your terminal emulator preferences to allow login shell. | |
| Sometimes it is required to use `/bin/bash --login` as the command. | |
| Please visit https://rvm.io/integration/gnome-terminal/ for a example. | |
| Branch name_indexing set up to track remote branch name_indexing from origin. | |
| Switched to a new branch 'name_indexing' | |
| Unfortunately, a fatal error has occurred. Please see the Bundler troubleshooting documentation at http://bit.ly/bundler-issues. Thanks! | |
| /usr/local/rvm/rubies/ruby-2.0.0-p247/lib/ruby/2.0.0/fileutils.rb:245:in `mkdir': Permission denied - /home/ubuntu/ghgvc/.bundle (Errno::EACCES) | |
| from /usr/local/rvm/rubies/ruby-2.0.0-p247/lib/ruby/2.0.0/fileutils.rb:245:in `fu_mkdir' | |
| from /usr/local/rvm/rubies/ruby-2.0.0-p247/lib/ruby/2.0.0/fileutils.rb:219:in `block (2 levels) in mkdir_p' | |
| from /usr/local/rvm/rubies/ruby-2.0.0-p247/lib/ruby/2.0.0/fileutils.rb:217:in `reverse_each' | |
| from /usr/local/rvm/rubies/ruby-2.0.0-p247/lib/ruby/2.0.0/fileutils.rb:217:in `block in mkdir_p' | |
| from /usr/local/rvm/rubies/ruby-2.0.0-p247/lib/ruby/2.0.0/fileutils.rb:203:in `each' | |
| from /usr/local/rvm/rubies/ruby-2.0.0-p247/lib/ruby/2.0.0/fileutils.rb:203:in `mkdir_p' | |
| from /usr/local/rvm/gems/ruby-2.0.0-p247@global/gems/bundler-1.3.5/lib/bundler/settings.rb:127:in `set_key' | |
| from /usr/local/rvm/gems/ruby-2.0.0-p247@global/gems/bundler-1.3.5/lib/bundler/settings.rb:17:in `[]=' | |
| from /usr/local/rvm/gems/ruby-2.0.0-p247@global/gems/bundler-1.3.5/lib/bundler/settings.rb:79:in `without=' | |
| from /usr/local/rvm/gems/ruby-2.0.0-p247@global/gems/bundler-1.3.5/lib/bundler/cli.rb:237:in `install' | |
| from /usr/local/rvm/gems/ruby-2.0.0-p247@global/gems/bundler-1.3.5/lib/bundler/vendor/thor/task.rb:27:in `run' | |
| from /usr/local/rvm/gems/ruby-2.0.0-p247@global/gems/bundler-1.3.5/lib/bundler/vendor/thor/invocation.rb:120:in `invoke_task' | |
| from /usr/local/rvm/gems/ruby-2.0.0-p247@global/gems/bundler-1.3.5/lib/bundler/vendor/thor.rb:344:in `dispatch' | |
| from /usr/local/rvm/gems/ruby-2.0.0-p247@global/gems/bundler-1.3.5/lib/bundler/vendor/thor/base.rb:434:in `start' | |
| from /usr/local/rvm/gems/ruby-2.0.0-p247@global/gems/bundler-1.3.5/bin/bundle:20:in `block in <top (required)>' | |
| from /usr/local/rvm/gems/ruby-2.0.0-p247@global/gems/bundler-1.3.5/lib/bundler/friendly_errors.rb:3:in `with_friendly_errors' | |
| from /usr/local/rvm/gems/ruby-2.0.0-p247@global/gems/bundler-1.3.5/bin/bundle:20:in `<top (required)>' | |
| from /usr/local/rvm/gems/ruby-2.0.0-p247@global/bin/bundle:23:in `load' | |
| from /usr/local/rvm/gems/ruby-2.0.0-p247@global/bin/bundle:23:in `<main>' | |
| from /usr/local/rvm/gems/ruby-2.0.0-p247@global/bin/ruby_executable_hooks:15:in `eval' | |
| from /usr/local/rvm/gems/ruby-2.0.0-p247@global/bin/ruby_executable_hooks:15:in `<main>' | |
| Reading package lists... Done | |
| Building dependency tree | |
| Reading state information... Done | |
| The following extra packages will be installed: | |
| libgfortran3 libhdf5-serial-1.8.4 libnetcdf6 | |
| Suggested packages: | |
| netcdf-doc | |
| The following NEW packages will be installed: | |
| libgfortran3 libhdf5-serial-1.8.4 libnetcdf-dev libnetcdf6 netcdf-bin | |
| 0 upgraded, 5 newly installed, 0 to remove and 37 not upgraded. | |
| Need to get 3,075 kB of archives. | |
| After this operation, 11.5 MB of additional disk space will be used. | |
| Get:1 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise/main libgfortran3 amd64 4.6.3-1ubuntu5 [357 kB] | |
| Get:2 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise/universe libhdf5-serial-1.8.4 amd64 1.8.4-patch1-3ubuntu2 [1,408 kB] | |
| Get:3 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise/universe libnetcdf6 amd64 1:4.1.1-6 [481 kB] | |
| Get:4 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise/universe libnetcdf-dev amd64 1:4.1.1-6 [644 kB] | |
| Get:5 http://us-east-1.ec2.archive.ubuntu.com/ubuntu/ precise/universe netcdf-bin amd64 1:4.1.1-6 [185 kB] | |
| Fetched 3,075 kB in 0s (5,901 kB/s) | |
| Selecting previously unselected package libgfortran3. | |
| (Reading database ... 51834 files and directories currently installed.) | |
| Unpacking libgfortran3 (from .../libgfortran3_4.6.3-1ubuntu5_amd64.deb) ... | |
| Selecting previously unselected package libhdf5-serial-1.8.4. | |
| Unpacking libhdf5-serial-1.8.4 (from .../libhdf5-serial-1.8.4_1.8.4-patch1-3ubuntu2_amd64.deb) ... | |
| Selecting previously unselected package libnetcdf6. | |
| Unpacking libnetcdf6 (from .../libnetcdf6_1%3a4.1.1-6_amd64.deb) ... | |
| Selecting previously unselected package libnetcdf-dev. | |
| Unpacking libnetcdf-dev (from .../libnetcdf-dev_1%3a4.1.1-6_amd64.deb) ... | |
| Selecting previously unselected package netcdf-bin. | |
| Unpacking netcdf-bin (from .../netcdf-bin_1%3a4.1.1-6_amd64.deb) ... | |
| Processing triggers for man-db ... | |
| Setting up libgfortran3 (4.6.3-1ubuntu5) ... | |
| Setting up libhdf5-serial-1.8.4 (1.8.4-patch1-3ubuntu2) ... | |
| Setting up libnetcdf6 (1:4.1.1-6) ... | |
| Setting up libnetcdf-dev (1:4.1.1-6) ... | |
| Setting up netcdf-bin (1:4.1.1-6) ... | |
| Processing triggers for libc-bin ... | |
| ldconfig deferred processing now taking place | |
| ./ghgvc.sh: line 32: cd: /home/ubuntu/.rvm/rubies/ruby-1.9.3-p125/bin/: No such file or directory | |
| RVM is not a function, selecting rubies with 'rvm use ...' will not work. | |
| You need to change your terminal emulator preferences to allow login shell. | |
| Sometimes it is required to use `/bin/bash --login` as the command. | |
| Please visit https://rvm.io/integration/gnome-terminal/ for a example. | |
| --2013-10-10 04:51:55-- http://www.gfd-dennou.org/arch/ruby/products/ruby-netcdf/release/ruby-netcdf-0.6.6.tar.gz | |
| Resolving www.gfd-dennou.org (www.gfd-dennou.org)... 130.54.59.159 | |
| Connecting to www.gfd-dennou.org (www.gfd-dennou.org)|130.54.59.159|:80... connected. | |
| HTTP request sent, awaiting response... 200 OK | |
| Length: 74868 (73K) [application/x-gzip] | |
| ruby-netcdf-0.6.6.tar.gz: Permission denied | |
| Cannot write to `ruby-netcdf-0.6.6.tar.gz' (Permission denied). | |
| tar (child): ruby-netcdf-0.6.6.tar.gz: Cannot open: No such file or directory | |
| tar (child): Error is not recoverable: exiting now | |
| tar: Child returned status 2 | |
| tar: Error is not recoverable: exiting now | |
| ruby: No such file or directory -- extconf.rb (LoadError) | |
| make: *** No targets specified and no makefile found. Stop. | |
| make: *** No rule to make target `install'. Stop. | |
| Could not locate Gemfile | |
| ubuntu@ip-10-145-231-204:~$ |
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