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carlosp420/partitioning models Beauti

Last active October 12, 2015 13:28
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partitioning models for Beauti
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partitioning models Beauti
taken from: http://www.robertlanfear.com/partitionfinder/news/
Models in PartitionFinder and how to set them up in BEAST/BEAUti
JC: in Beauti use the GTR with base frequences set to All equal and turn off all operators for parameters.
F81: in BEAUti use the GTR and turn off all operators for parameters
K80: in BEAUti this is “HKY” with “base frequencies” set to “All Equal”
TrNef: in BEAUti this is “TN93” with “base frequencies” set to “All Equal”
SYM: in BEAUti this is “GTR” with “base frequencies” set to “All Equal”
HKY: in BEAUti this is “HKY” with “base frequencies” set to “estimated”
TrN: in BEAUti this is “TN93” with “base frequencies” set to “estimated”
GTR: in BEAUti this is “GTR” with “base frequencies” set to “estimated”
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