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@sckott
sckott / rplos_alm3.r
Created November 1, 2012 16:57
Plos ALM API v3 example
install.packages("devtools")
require(devtools)
install_github("rplos", "rOpenSci", "almv3")
require(rplos)
out <- almplosallviews(doi='10.1371/journal.pmed.0050201', info='detail')
almplotallviews(out, type="totalmetrics")
almplotallviews(out, type="history")
@brantfaircloth
brantfaircloth / gist:895282
Created March 30, 2011 20:55
Substitution models in mrbayes

##GTR lset applyto=() nst=6 # GTR lset applyto=() nst=6 rates=propinv # GTR + I lset applyto=() nst=6 rates=gamma # GTR + gamma lset applyto=() nst=6 rates=invgamma # GTR + I + gamma

##SYM

lset applyto=() nst=6                           # SYM

prset applyto=() statefreqpr=fixed(equal)