SPAdes issued params

params.txt

Command line: /cm/shared/c3ddb/SPAdes/3.6.2/bin/spades.py --careful --sc -t 8 -m 64 -1 /scratch/users/yehang/mock/28625_R1_paired.fastq -2 /scratch/users/yehang/mock/28625_R2_paired.fastq -o /scratch/users/yehang/individual/results/28625 

System information:
  SPAdes version: 3.6.2
  Python version: 2.6.6
  OS: Linux-2.6.32-431.el6.x86_64-x86_64-with-redhat-6.6-Santiago

Output dir: /scratch/users/yehang/individual/results/28625
Mode: read error correction and assembling
Debug mode is turned OFF

Dataset parameters:
  Single-cell mode
  Reads:
    Library number: 1, library type: paired-end
      orientation: fr
      left reads: ['/scratch/users/yehang/mock/28625_R1_paired.fastq']
      right reads: ['/scratch/users/yehang/mock/28625_R2_paired.fastq']
      interlaced reads: not specified
      single reads: not specified
Read error correction parameters:
  Iterations: 1
  PHRED offset will be auto-detected
  Corrected reads will be compressed (with gzip)
Assembly parameters:
  k: [21, 33, 55]
  Mismatch careful mode is turned ON
  Repeat resolution is enabled
  MismatchCorrector will be used
  Coverage cutoff is turned OFF
Other parameters:
  Dir for temp files: /scratch/users/yehang/individual/results/28625/tmp
  Threads: 8
  Memory limit (in Gb): 64